mRNA_Ecto-sp13_S_contig72382.18370.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72382.18370.1
Unique NamemRNA_Ecto-sp13_S_contig72382.18370.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72382.18370.1 vs. uniprot
Match: A0A6H5JR07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR07_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 2.520e-48
Identity = 104/118 (88.14%), Postives = 107/118 (90.68%), Query Frame = 1 
Query:   88 GEEKEHEDCGEGXXXXXXXXXXXXXXXXXXXATSVENLADLVPGGKEEEASMEQRLGEAVLARASDSFQHFQPRQLSRLCWALGAWHGRGLVKLPGSDVFAARSLSEAGQHPKEYTAE 441
            GEE E EDCGEG     XXXXXXXXXXXXX ATSVE LADLVPGGK+EEASMEQRLGEAVLARA+DSFQHFQPRQLSRLCWALGAW+GRG VKLPGSDVF ARSLSEAGQHPKEYTAE
Sbjct:  614 GEEVEQEDCGEGLSEEGXXXXXXXXXXXXXNATSVETLADLVPGGKKEEASMEQRLGEAVLARATDSFQHFQPRQLSRLCWALGAWNGRGSVKLPGSDVFVARSLSEAGQHPKEYTAE 731
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BLAST of mRNA_Ecto-sp13_S_contig72382.18370.1 vs. uniprot
Match: D7FYY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY5_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 7.490e-42
Identity = 89/140 (63.57%), Postives = 94/140 (67.14%), Query Frame = 1 
Query:   31 WGLGWVKSRLERGSGPEGDGEEKEHEDCGEGXXXXXXXXXXXXXXXXXXXATSVENLADLVP---GGKEEEASMEQRLGEAVLARASDSFQHFQPRQLSRLCWALGAWHGRGLVKLPGSDVFAARSLSEAGQHPKEYTAE 441
            WGLGWVKSR ERGSGPEGDGEE E EDCGEG                   ATSVE LADLV    GG+  + +              +SFQHFQPRQLSRLCWALGAWHGRG VKL GSD+FAARSLSEAGQHPKEYTAE
Sbjct:  710 WGLGWVKSRWERGSGPEGDGEE-EQEDCGEGLSEEGSGSGEASSDPADIHATSVETLADLVSRREGGRGFDGA--------------ESFQHFQPRQLSRLCWALGAWHGRGSVKLLGSDIFAARSLSEAGQHPKEYTAE 834
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72382.18370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JR07_9PHAE2.520e-4888.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYY5_ECTSI7.490e-4263.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72382contigEcto-sp13_S_contig72382:31..680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size444
Hectar predicted targeting categoryother localisation
Exons2
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463991.48267-CDS-Ecto-sp13_S_contig72382:30..3171681463991.48267-CDS-Ecto-sp13_S_contig72382:30..317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72382 31..317 +
1681463991.5020297-CDS-Ecto-sp13_S_contig72382:524..6781681463991.5020297-CDS-Ecto-sp13_S_contig72382:524..678Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72382 525..678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72382.18370.1prot_Ecto-sp13_S_contig72382.18370.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72382 31..678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72382.18370.1

>prot_Ecto-sp13_S_contig72382.18370.1 ID=prot_Ecto-sp13_S_contig72382.18370.1|Name=mRNA_Ecto-sp13_S_contig72382.18370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
GDADGGGGGAWGLGWVKSRLERGSGPEGDGEEKEHEDCGEGLSEEGSDSG
EASSDSADDNATSVENLADLVPGGKEEEASMEQRLGEAVLARASDSFQHF
QPRQLSRLCWALGAWHGRGLVKLPGSDVFAARSLSEAGQHPKEYTAE
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mRNA from alignment at Ecto-sp13_S_contig72382:31..680+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72382.18370.1 ID=mRNA_Ecto-sp13_S_contig72382.18370.1|Name=mRNA_Ecto-sp13_S_contig72382.18370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=650bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72382:31..680+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGACGCCGATGGCGGCGGCGGTGGCGCGTGGGGGCTGGGGTGGGTGAA
GTCGAGGTTGGAGCGGGGTAGCGGCCCGGAGGGGGACGGAGAAGAGAAGG
AGCACGAGGACTGCGGCGAGGGGTTATCAGAGGAAGGCTCGGATAGCGGG
GAGGCATCCAGTGATTCTGCTGATGATAACGCCACCTCGGTGGAAAACCT
TGCGGACCTGGTTCCCGGAGGGAAGGAGGAAGAGGCTTCGATGGAGCAAA
GGCTGGGGGAGGCGGTGTTGGCGCGGGCGAGTGATAGGTATGGCGTTGGG
GGGGGGGGGGGGGGGGGGGGGGGGGTGGTTTTTAACCCGTTTGTTTGGTT
GGGGTGTGGAGTGTCGTGCGCTGTGTTCTGGAGTCTGCCTCGCGCCACCG
GTGCCTCCTTGCCCCGCTCTTTGCGTAAGGCGTCTGTCGTTCCGTTTGTC
CCGAATTGGTTTTCCCCTGGGTGTGTGACGCCGGCACCCACCAGCTTCCA
GCACTTCCAGCCTAGGCAGCTGTCGAGGCTGTGCTGGGCGCTGGGGGCTT
GGCACGGGCGTGGGTTGGTCAAGCTCCCGGGGTCCGACGTTTTCGCGGCG
AGGTCGTTGTCAGAGGCCGGGCAACACCCCAAGGAGTACACAGCCGAAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72382:31..680+

>mRNA_Ecto-sp13_S_contig72382.18370.1 ID=mRNA_Ecto-sp13_S_contig72382.18370.1|Name=mRNA_Ecto-sp13_S_contig72382.18370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72382:31..680+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGACGCCGATGGCGGCGGCGGTGGCGCGTGGGGGCTGGGGTGGGTGAA
GTCGAGGTTGGAGCGGGGTAGCGGCCCGGAGGGGGACGGAGAAGAGAAGG
AGCACGAGGACTGCGGCGAGGGGTTATCAGAGGAAGGCTCGGATAGCGGG
GAGGCATCCAGTGATTCTGCTGATGATAACGCCACCTCGGTGGAAAACCT
TGCGGACCTGGTTCCCGGAGGGAAGGAGGAAGAGGCTTCGATGGAGCAAA
GGCTGGGGGAGGCGGTGTTGGCGCGGGCGAGTGATAGCTTCCAGCACTTC
CAGCCTAGGCAGCTGTCGAGGCTGTGCTGGGCGCTGGGGGCTTGGCACGG
GCGTGGGTTGGTCAAGCTCCCGGGGTCCGACGTTTTCGCGGCGAGGTCGT
TGTCAGAGGCCGGGCAACACCCCAAGGAGTACACAGCCGAA
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