mRNA_Ecto-sp13_S_contig7238.18369.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: A0A6H5K2C6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2C6_9PHAE) HSP 1 Score: 410 bits (1055), Expect = 6.540e-139 Identity = 217/237 (91.56%), Postives = 219/237 (92.41%), Query Frame = 2
Query: 2 SGLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSS-------QLPLVLLGGVSGLAGSIFDSLMGAVLQASYFDT 691
SGLKKKSLNRSGAMAAFFVGLVSLGLSLR GLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHT VTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGF+CFGW+FRLS SPAGHSSP QLPLVLLGGVSGLAGSI DSLMGAVLQASYFDT
Sbjct: 27 SGLKKKSLNRSGAMAAFFVGLVSLGLSLRFGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTVVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFVCFGWVFRLSPPSPAGHSSPXXXXXXXXXXXXXQLPLVLLGGVSGLAGSILDSLMGAVLQASYFDT 263
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: D8LMW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW9_ECTSI) HSP 1 Score: 322 bits (825), Expect = 3.850e-105 Identity = 166/170 (97.65%), Postives = 167/170 (98.24%), Query Frame = 2
Query: 2 SGLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAG 511
SGLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAV+HT VTGAGDSLVDFE DPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVAS AAGVVMGAG
Sbjct: 27 SGLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVHHTVVTGAGDSLVDFESDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASVAAGVVMGAG 196
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: A0A7S2V002_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V002_9STRA) HSP 1 Score: 285 bits (728), Expect = 3.680e-89 Identity = 163/286 (56.99%), Postives = 203/286 (70.98%), Query Frame = 2
Query: 2 SGLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSL---VDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSSQLPLVLLGGVSGLAGSIFDSLMGAVLQASYFDTKRKVIVEKPSASSIAGGDLKRISGRDILTNEQVNVVSAVVTSVLAGLLGSLLF 850
SGLKK+SL+RSGA AAFFVGLVSL +S RLGLTLILFYKSSSILTKVG ++KA+L D + GQR A QVLSCS A ++AV + G D L V++ P LLCAYLG YACC GDTWSSELGVLS++PP LIT+PW+TVP GTNGG+S MGT+A+ AAGVV+GAGFL FGW+ +P Q L+ GG+ GL GS+ DSLMGA LQA+Y+D ++K I K S D+ R+ G DILTNEQVN++S +VT++ +G +G+L+F
Sbjct: 26 SGLKKRSLSRSGACAAFFVGLVSLSISARLGLTLILFYKSSSILTKVGQKKKAQLDDHHVTDGQRTATQVLSCSGIACVVAVIMYYLEGE-DMLAMGVNYSSHPTTSFLLCAYLGHYACCNGDTWSSELGVLSRSPPILITQPWRTVPAGTNGGVSTMGTLAAGAAGVVIGAGFLLFGWM----------QGAPQDG---QYLLIPFGGMCGLLGSMLDSLMGATLQATYYDREKKCITSKVEGKS---SDVVRVCGYDILTNEQVNLLSVLVTTIGSGYMGALMF 294
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: A0A7S2RII1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RII1_9STRA) HSP 1 Score: 238 bits (606), Expect = 4.230e-71 Identity = 141/278 (50.72%), Postives = 176/278 (63.31%), Query Frame = 2
Query: 5 GLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSSQLPLVLLGGVSGLAGSIFDSLMGAVLQASYFDTKRKVIVEKPSASSIAGGDLKRISGRDILTNEQVNVVSAVVTSVLAGLLG 838
GL+KKSL+ SGA AA VG +S S R GL LI FY+SSS LTK ERK +L YKEGGQR A QV SCSL AT++AV G D VD P+ ALLCAYLG YACC GDTW+SELG L PRL+ PW+ VP GTNGGMS +GT AS A G+ +G F+ G HSSP + S QLPL+ LG G GS+ DS +GA LQA+++ ++++IV PS++S D+ RI+G DIL+NEQVN +S +T+ L+ G
Sbjct: 20 GLRKKSLSPSGAAAAVLVGFLSFLASFRFGLVLIAFYQSSSSLTKFQGERKRRLEAGYKEGGQRDAEQVFSCSLLATVMAVVFLLTQGE-DQPVDSAAAPMRSALLCAYLGHYACCNGDTWASELGTLDSGLPRLVLAPWRKVPKGTNGGMSFLGTAASLAGGLFIGLVFVVCG-----------PHSSPGAPS--QLPLIALGAAGGFVGSLIDSFLGATLQATFYHREKRIIV--PSSAS-DNADVDRITGVDILSNEQVNALSVAITTALSFYAG 280
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: K8YV45_NANGC (Uncharacterized protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YV45_NANGC) HSP 1 Score: 228 bits (580), Expect = 1.050e-66 Identity = 126/286 (44.06%), Postives = 187/286 (65.38%), Query Frame = 2
Query: 5 GLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWK-TVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSSQLPLVLLGGVSGLAGSIFDSLMGAVLQASYFDTKRKVIVEKPSASSIAGG---DLKRISGRDILTNEQVNVVSAVVTSVLAGLLGSLLF 850
GL+K SL++SGA+AA+ VG +S+G SLR G +ILFY+SSS+LT+ E KA L +D+K+GGQR AAQVL+CS T++AV + G D ++FE PL LLCAY+G YACC GDTW+SE+G+LS + PRL+T ++ VP GTNGGMSL GT+AS A G ++G G G++ + + P + ++G G GS+ DS++G + QA+++ ++K +V+ P+A G ++ ISG D+L+NE VN++S +++ LA +LG LL+
Sbjct: 45 GLRKHSLSKSGALAAWVVGFLSMGASLRFGALMILFYQSSSMLTRYRCETKALLEEDHKQGGQRSAAQVLACSFLGTLIAVAFVFLLGPDDLPLNFEASPLRSRLLCAYVGHYACCNGDTWASEIGILSPSSPRLVTAGFRRVVPRGTNGGMSLTGTLASIAGGALIGTGHSILGFVLGMPDDASGAGWCPG-----WFFMTVIGAACGFIGSLSDSILGGLFQATWYCAEKKRVVKHPTAQERQGRGAEQVRLISGLDLLSNEHVNLISIALSTALAPVLGRLLW 325
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: A0A7S2N4E0_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2N4E0_9EUKA) HSP 1 Score: 221 bits (563), Expect = 7.320e-65 Identity = 127/276 (46.01%), Postives = 176/276 (63.77%), Query Frame = 2
Query: 5 GLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSSQLPLVLLGGVSGLAGSIFDSLMGAVLQASYFDTKRKVIVEKPSASSIAGGDLKRISGRDILTNEQVNVVSAVVTSVLAGL 832
G K+ SLNR GA AAF V ++ SLR G+TL++FYK+ S+LTKVG K KL D Y GQRGA+QVL+CS A AV + G + + L L A++ F+ACCAGDT++SELG+LS++PPR++T+PWK PPGTNGG++ +GT+ASA GV MG LC +F L P+ H + L +G ++G+ GSI DSL+GA +QA+Y+D +RK+IV+K SA++ K +SG +L+NE VN VS ++LA L
Sbjct: 6 GYKRGSLNRDGATAAFVVAALAFSCSLRSGMTLLVFYKTGSMLTKVGASVKNKLEDGYAAEGQRGASQVLACSAIAVACAVARRLLVGTDGPIDLADVQCLGNRLTLAFVAFFACCAGDTYASELGILSRSPPRIVTQPWKVAPPGTNGGITALGTLASAGGGVCMG---LCHA-VFLGPLLPPSAHECAA--------LTYVGLLAGVGGSILDSLLGATVQATYYDEERKLIVKKQSAAT------KCVSGFPLLSNEMVNFVSTTAVALLAAL 263
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: R1C669_EMIHU (Uncharacterized protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C669_EMIHU) HSP 1 Score: 221 bits (563), Expect = 1.060e-64 Identity = 130/282 (46.10%), Postives = 175/282 (62.06%), Query Frame = 2
Query: 5 GLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAG-ALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSSQLPLVLLGGVSGLAGSIFDSLMGAVLQASYFDTKRKVIVEKPSASSIAGGDLKRISGRDILTNEQVNVVSAVVTSVLAGLLGSLL 847
GLK+ SL R GA AAF VGL+S S+R G+TL+ FYKS S+LT+VG + K K+ + Y GQRGAAQVL+CS AV A+ G D+ +DF AG L AY+ F+ACCAGDTW+SELGVLS +PPR+IT+PW+T P GTNGG+S++GT+ASAA G C G L P+G + L LV G V G+ GS+ DSL+GA +QA+Y+D +++V +P+ + +R++G +L+NE VN VS +V A LL
Sbjct: 22 GLKRGSLQRDGAAAAFVVGLLSFSCSIRCGVTLLFFYKSGSMLTRVGADVKRKVEEGYAAEGQRGAAQVLACSAVGVAAAVLRRALVGP-DAPLDFSDLASAGNRLTLAYVSFFACCAGDTWASELGVLSASPPRIITQPWRTAPAGTNGGVSVLGTLASAAGGA-------CIGACHAACLLPPSGREA--------LGLVWAGLVGGVGGSLLDSLLGATVQATYYDEASRMVVGRPTPKA------RRVAGLPLLSNEMVNFVSTAAAAVAAASAPRLL 281
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: A0A3F2RXA6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXA6_9STRA) HSP 1 Score: 219 bits (559), Expect = 3.440e-64 Identity = 131/282 (46.45%), Postives = 179/282 (63.48%), Query Frame = 2
Query: 5 GLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSSQLPLVLLGGVSGLAGSIFDSLMGAVLQASYFDTKRKVIVEKPSASSIAGGDLKRISGRDILTNEQVNVVSAVVTSVLAGLLGSLLF 850
GLKKKSL+ SGA+AA FVG ++L S R G+ L+ FY S S LTKV K +L +YK GGQR A QVL+CSL AT +AVY G D +DF LL +Y+G YACCA DTW+SELGVLS++ PRLIT + VPPGTNG +S++G SA G +G ++ +L S S+Q ++ LG V+GL GS+FDS++GA +QA+YFD + I ++ S GGD++ + G D+L+NEQVNVVS +VT+ ++G++ + LF
Sbjct: 19 GLKKKSLDVSGAIAASFVGFLTLSSSYRFGVLLLGFYFSGSKLTKVRSSVKQQLDANYKPGGQRSAGQVLACSLLATFIAVYTFLQFGDDDVPIDFTAAKAHSYLLASYIGHYACCAADTWASELGVLSQSKPRLITT-LRRVPPGTNGAVSVLGLAVSALGGTFIGV-------LYYAGSLL---------SGSAQAQVITLGAVTGLFGSVFDSVLGATVQATYFDRASRKICDE----SAVGGDVEHVCGVDLLSNEQVNVVSVLVTTAISGVVATYLF 279
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: A0A1W0A0M5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0M5_9STRA) HSP 1 Score: 219 bits (558), Expect = 5.980e-64 Identity = 132/282 (46.81%), Postives = 172/282 (60.99%), Query Frame = 2
Query: 5 GLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSSQLPLVLLGGVSGLAGSIFDSLMGAVLQASYFDTKRKVIVEKPSASSIAGGDLKRISGRDILTNEQVNVVSAVVTSVLAGLLGSLLF 850
GL+KKSL++SGA+AAF VG S+G R G+ L+ FY S S LT RKA + KEGGQR A QVL+CSL A I+ V + +V G D+ +D P A L Y+G YACCA DTW+SELGVLS +PP LITK W VP GTNGG+S +GT+ASAA G +G F +G IF S P Q P + G VSGL GS DSL+GA +QA+++D K I +P + + + G D+LTNEQVN+VS +T++++G L + F
Sbjct: 21 GLRKKSLDKSGAIAAFVVGATSMGCGYRFGILLLGFYFSGSKLTTFQENRKAMMDASVKEGGQRSARQVLACSLLACIVCVIYASVVG-DDAQIDPIKQPTATFLWGCYIGHYACCAADTWASELGVLSPSPPVLITKFWIKVPTGTNGGISCVGTLASAAGGAFIGLLFYVYGVIFLPSTSVP------------QWPSITFGLVSGLFGSFLDSLLGATIQATWYDDTTKKIAPRPLKTQPF--TYRHVCGYDVLTNEQVNLVSVALTTIISGYLINYFF 287
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: M4C455_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C455_HYAAE) HSP 1 Score: 219 bits (557), Expect = 6.580e-64 Identity = 137/283 (48.41%), Postives = 176/283 (62.19%), Query Frame = 2
Query: 5 GLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSSQLPLVLLGGVSGLAGSIFDSLMGAVLQASYFD-TKRKVIVEKPSASSIAGGDLKRISGRDILTNEQVNVVSAVVTSVLAGLLGSLLF 850
GLKK+SL+ SGA AA VG +L R G+ L+ FY S S LTKV K +L +YK+GGQR A QVL+CSL AT++AVY G D +DFE P + LL +Y+G YACCA DTW+SELGVLSK+ PRLI WK VPPGTNGG+S++G SA G +GA + F S LS ++QL +V LG V+GL GS DS++GA LQA+Y+D RK+ E P ++ I GR L+NEQVNVVS +VT+ ++G L + LF
Sbjct: 22 GLKKQSLDVSGAAAACCVGFFTLASGYRFGVLLLGFYFSGSKLTKVRASVKQQLDANYKQGGQRSARQVLACSLVATLIAVYFVVRFGHDDVALDFESAPESSFLLASYIGHYACCAADTWASELGVLSKSEPRLIMT-WKRVPPGTNGGVSVLGLAVSALGGAFIGALY------FATSLLS----------GTAQLHVVTLGAVTGLFGSALDSILGATLQATYYDRATRKICDEAPH--------VEHICGRKWLSNEQVNVVSTLVTTAVSGALATYLF 279 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7238.18369.1 >prot_Ecto-sp13_S_contig7238.18369.1 ID=prot_Ecto-sp13_S_contig7238.18369.1|Name=mRNA_Ecto-sp13_S_contig7238.18369.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=271bp MAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGback to top mRNA from alignment at Ecto-sp13_S_contig7238:1503..7641- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7238.18369.1 ID=mRNA_Ecto-sp13_S_contig7238.18369.1|Name=mRNA_Ecto-sp13_S_contig7238.18369.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6139bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7238:1503..7641- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7238:1503..7641- >mRNA_Ecto-sp13_S_contig7238.18369.1 ID=mRNA_Ecto-sp13_S_contig7238.18369.1|Name=mRNA_Ecto-sp13_S_contig7238.18369.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7238:1503..7641- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |