mRNA_Ecto-sp13_S_contig7238.18369.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7238.18369.1
Unique NamemRNA_Ecto-sp13_S_contig7238.18369.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: A0A6H5K2C6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2C6_9PHAE)

HSP 1 Score: 410 bits (1055), Expect = 6.540e-139
Identity = 217/237 (91.56%), Postives = 219/237 (92.41%), Query Frame = 2
Query:    2 SGLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSS-------QLPLVLLGGVSGLAGSIFDSLMGAVLQASYFDT 691
            SGLKKKSLNRSGAMAAFFVGLVSLGLSLR GLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHT VTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGF+CFGW+FRLS  SPAGHSSP             QLPLVLLGGVSGLAGSI DSLMGAVLQASYFDT
Sbjct:   27 SGLKKKSLNRSGAMAAFFVGLVSLGLSLRFGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTVVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFVCFGWVFRLSPPSPAGHSSPXXXXXXXXXXXXXQLPLVLLGGVSGLAGSILDSLMGAVLQASYFDT 263          
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: D8LMW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW9_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 3.850e-105
Identity = 166/170 (97.65%), Postives = 167/170 (98.24%), Query Frame = 2
Query:    2 SGLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAG 511
            SGLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAV+HT VTGAGDSLVDFE DPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVAS AAGVVMGAG
Sbjct:   27 SGLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVHHTVVTGAGDSLVDFESDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASVAAGVVMGAG 196          
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: A0A7S2V002_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V002_9STRA)

HSP 1 Score: 285 bits (728), Expect = 3.680e-89
Identity = 163/286 (56.99%), Postives = 203/286 (70.98%), Query Frame = 2
Query:    2 SGLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSL---VDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSSQLPLVLLGGVSGLAGSIFDSLMGAVLQASYFDTKRKVIVEKPSASSIAGGDLKRISGRDILTNEQVNVVSAVVTSVLAGLLGSLLF 850
            SGLKK+SL+RSGA AAFFVGLVSL +S RLGLTLILFYKSSSILTKVG ++KA+L D +   GQR A QVLSCS  A ++AV    + G  D L   V++   P    LLCAYLG YACC GDTWSSELGVLS++PP LIT+PW+TVP GTNGG+S MGT+A+ AAGVV+GAGFL FGW+            +P      Q  L+  GG+ GL GS+ DSLMGA LQA+Y+D ++K I  K    S    D+ R+ G DILTNEQVN++S +VT++ +G +G+L+F
Sbjct:   26 SGLKKRSLSRSGACAAFFVGLVSLSISARLGLTLILFYKSSSILTKVGQKKKAQLDDHHVTDGQRTATQVLSCSGIACVVAVIMYYLEGE-DMLAMGVNYSSHPTTSFLLCAYLGHYACCNGDTWSSELGVLSRSPPILITQPWRTVPAGTNGGVSTMGTLAAGAAGVVIGAGFLLFGWM----------QGAPQDG---QYLLIPFGGMCGLLGSMLDSLMGATLQATYYDREKKCITSKVEGKS---SDVVRVCGYDILTNEQVNLLSVLVTTIGSGYMGALMF 294          
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: A0A7S2RII1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RII1_9STRA)

HSP 1 Score: 238 bits (606), Expect = 4.230e-71
Identity = 141/278 (50.72%), Postives = 176/278 (63.31%), Query Frame = 2
Query:    5 GLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSSQLPLVLLGGVSGLAGSIFDSLMGAVLQASYFDTKRKVIVEKPSASSIAGGDLKRISGRDILTNEQVNVVSAVVTSVLAGLLG 838
            GL+KKSL+ SGA AA  VG +S   S R GL LI FY+SSS LTK   ERK +L   YKEGGQR A QV SCSL AT++AV      G  D  VD    P+  ALLCAYLG YACC GDTW+SELG L    PRL+  PW+ VP GTNGGMS +GT AS A G+ +G  F+  G            HSSP + S  QLPL+ LG   G  GS+ DS +GA LQA+++  ++++IV  PS++S    D+ RI+G DIL+NEQVN +S  +T+ L+   G
Sbjct:   20 GLRKKSLSPSGAAAAVLVGFLSFLASFRFGLVLIAFYQSSSSLTKFQGERKRRLEAGYKEGGQRDAEQVFSCSLLATVMAVVFLLTQGE-DQPVDSAAAPMRSALLCAYLGHYACCNGDTWASELGTLDSGLPRLVLAPWRKVPKGTNGGMSFLGTAASLAGGLFIGLVFVVCG-----------PHSSPGAPS--QLPLIALGAAGGFVGSLIDSFLGATLQATFYHREKRIIV--PSSAS-DNADVDRITGVDILSNEQVNALSVAITTALSFYAG 280          
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: K8YV45_NANGC (Uncharacterized protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YV45_NANGC)

HSP 1 Score: 228 bits (580), Expect = 1.050e-66
Identity = 126/286 (44.06%), Postives = 187/286 (65.38%), Query Frame = 2
Query:    5 GLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWK-TVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSSQLPLVLLGGVSGLAGSIFDSLMGAVLQASYFDTKRKVIVEKPSASSIAGG---DLKRISGRDILTNEQVNVVSAVVTSVLAGLLGSLLF 850
            GL+K SL++SGA+AA+ VG +S+G SLR G  +ILFY+SSS+LT+   E KA L +D+K+GGQR AAQVL+CS   T++AV    + G  D  ++FE  PL   LLCAY+G YACC GDTW+SE+G+LS + PRL+T  ++  VP GTNGGMSL GT+AS A G ++G G    G++  +   +      P         + ++G   G  GS+ DS++G + QA+++  ++K +V+ P+A    G     ++ ISG D+L+NE VN++S  +++ LA +LG LL+
Sbjct:   45 GLRKHSLSKSGALAAWVVGFLSMGASLRFGALMILFYQSSSMLTRYRCETKALLEEDHKQGGQRSAAQVLACSFLGTLIAVAFVFLLGPDDLPLNFEASPLRSRLLCAYVGHYACCNGDTWASEIGILSPSSPRLVTAGFRRVVPRGTNGGMSLTGTLASIAGGALIGTGHSILGFVLGMPDDASGAGWCPG-----WFFMTVIGAACGFIGSLSDSILGGLFQATWYCAEKKRVVKHPTAQERQGRGAEQVRLISGLDLLSNEHVNLISIALSTALAPVLGRLLW 325          
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: A0A7S2N4E0_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2N4E0_9EUKA)

HSP 1 Score: 221 bits (563), Expect = 7.320e-65
Identity = 127/276 (46.01%), Postives = 176/276 (63.77%), Query Frame = 2
Query:    5 GLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSSQLPLVLLGGVSGLAGSIFDSLMGAVLQASYFDTKRKVIVEKPSASSIAGGDLKRISGRDILTNEQVNVVSAVVTSVLAGL 832
            G K+ SLNR GA AAF V  ++   SLR G+TL++FYK+ S+LTKVG   K KL D Y   GQRGA+QVL+CS  A   AV    + G    +   +   L   L  A++ F+ACCAGDT++SELG+LS++PPR++T+PWK  PPGTNGG++ +GT+ASA  GV MG   LC   +F    L P+ H   +        L  +G ++G+ GSI DSL+GA +QA+Y+D +RK+IV+K SA++      K +SG  +L+NE VN VS    ++LA L
Sbjct:    6 GYKRGSLNRDGATAAFVVAALAFSCSLRSGMTLLVFYKTGSMLTKVGASVKNKLEDGYAAEGQRGASQVLACSAIAVACAVARRLLVGTDGPIDLADVQCLGNRLTLAFVAFFACCAGDTYASELGILSRSPPRIVTQPWKVAPPGTNGGITALGTLASAGGGVCMG---LCHA-VFLGPLLPPSAHECAA--------LTYVGLLAGVGGSILDSLLGATVQATYYDEERKLIVKKQSAAT------KCVSGFPLLSNEMVNFVSTTAVALLAAL 263          
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: R1C669_EMIHU (Uncharacterized protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C669_EMIHU)

HSP 1 Score: 221 bits (563), Expect = 1.060e-64
Identity = 130/282 (46.10%), Postives = 175/282 (62.06%), Query Frame = 2
Query:    5 GLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAG-ALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSSQLPLVLLGGVSGLAGSIFDSLMGAVLQASYFDTKRKVIVEKPSASSIAGGDLKRISGRDILTNEQVNVVSAVVTSVLAGLLGSLL 847
            GLK+ SL R GA AAF VGL+S   S+R G+TL+ FYKS S+LT+VG + K K+ + Y   GQRGAAQVL+CS      AV   A+ G  D+ +DF     AG  L  AY+ F+ACCAGDTW+SELGVLS +PPR+IT+PW+T P GTNGG+S++GT+ASAA G        C G       L P+G  +        L LV  G V G+ GS+ DSL+GA +QA+Y+D   +++V +P+  +      +R++G  +L+NE VN VS    +V A     LL
Sbjct:   22 GLKRGSLQRDGAAAAFVVGLLSFSCSIRCGVTLLFFYKSGSMLTRVGADVKRKVEEGYAAEGQRGAAQVLACSAVGVAAAVLRRALVGP-DAPLDFSDLASAGNRLTLAYVSFFACCAGDTWASELGVLSASPPRIITQPWRTAPAGTNGGVSVLGTLASAAGGA-------CIGACHAACLLPPSGREA--------LGLVWAGLVGGVGGSLLDSLLGATVQATYYDEASRMVVGRPTPKA------RRVAGLPLLSNEMVNFVSTAAAAVAAASAPRLL 281          
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: A0A3F2RXA6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXA6_9STRA)

HSP 1 Score: 219 bits (559), Expect = 3.440e-64
Identity = 131/282 (46.45%), Postives = 179/282 (63.48%), Query Frame = 2
Query:    5 GLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSSQLPLVLLGGVSGLAGSIFDSLMGAVLQASYFDTKRKVIVEKPSASSIAGGDLKRISGRDILTNEQVNVVSAVVTSVLAGLLGSLLF 850
            GLKKKSL+ SGA+AA FVG ++L  S R G+ L+ FY S S LTKV    K +L  +YK GGQR A QVL+CSL AT +AVY     G  D  +DF        LL +Y+G YACCA DTW+SELGVLS++ PRLIT   + VPPGTNG +S++G   SA  G  +G        ++   +L          S S+Q  ++ LG V+GL GS+FDS++GA +QA+YFD   + I ++    S  GGD++ + G D+L+NEQVNVVS +VT+ ++G++ + LF
Sbjct:   19 GLKKKSLDVSGAIAASFVGFLTLSSSYRFGVLLLGFYFSGSKLTKVRSSVKQQLDANYKPGGQRSAGQVLACSLLATFIAVYTFLQFGDDDVPIDFTAAKAHSYLLASYIGHYACCAADTWASELGVLSQSKPRLITT-LRRVPPGTNGAVSVLGLAVSALGGTFIGV-------LYYAGSLL---------SGSAQAQVITLGAVTGLFGSVFDSVLGATVQATYFDRASRKICDE----SAVGGDVEHVCGVDLLSNEQVNVVSVLVTTAISGVVATYLF 279          
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: A0A1W0A0M5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0M5_9STRA)

HSP 1 Score: 219 bits (558), Expect = 5.980e-64
Identity = 132/282 (46.81%), Postives = 172/282 (60.99%), Query Frame = 2
Query:    5 GLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSSQLPLVLLGGVSGLAGSIFDSLMGAVLQASYFDTKRKVIVEKPSASSIAGGDLKRISGRDILTNEQVNVVSAVVTSVLAGLLGSLLF 850
            GL+KKSL++SGA+AAF VG  S+G   R G+ L+ FY S S LT     RKA +    KEGGQR A QVL+CSL A I+ V + +V G  D+ +D    P A  L   Y+G YACCA DTW+SELGVLS +PP LITK W  VP GTNGG+S +GT+ASAA G  +G  F  +G IF  S   P            Q P +  G VSGL GS  DSL+GA +QA+++D   K I  +P  +       + + G D+LTNEQVN+VS  +T++++G L +  F
Sbjct:   21 GLRKKSLDKSGAIAAFVVGATSMGCGYRFGILLLGFYFSGSKLTTFQENRKAMMDASVKEGGQRSARQVLACSLLACIVCVIYASVVG-DDAQIDPIKQPTATFLWGCYIGHYACCAADTWASELGVLSPSPPVLITKFWIKVPTGTNGGISCVGTLASAAGGAFIGLLFYVYGVIFLPSTSVP------------QWPSITFGLVSGLFGSFLDSLLGATIQATWYDDTTKKIAPRPLKTQPF--TYRHVCGYDVLTNEQVNLVSVALTTIISGYLINYFF 287          
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Match: M4C455_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C455_HYAAE)

HSP 1 Score: 219 bits (557), Expect = 6.580e-64
Identity = 137/283 (48.41%), Postives = 176/283 (62.19%), Query Frame = 2
Query:    5 GLKKKSLNRSGAMAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGGQRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAGALLCAYLGFYACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAAGVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSSQLPLVLLGGVSGLAGSIFDSLMGAVLQASYFD-TKRKVIVEKPSASSIAGGDLKRISGRDILTNEQVNVVSAVVTSVLAGLLGSLLF 850
            GLKK+SL+ SGA AA  VG  +L    R G+ L+ FY S S LTKV    K +L  +YK+GGQR A QVL+CSL AT++AVY     G  D  +DFE  P +  LL +Y+G YACCA DTW+SELGVLSK+ PRLI   WK VPPGTNGG+S++G   SA  G  +GA +      F  S LS           ++QL +V LG V+GL GS  DS++GA LQA+Y+D   RK+  E P         ++ I GR  L+NEQVNVVS +VT+ ++G L + LF
Sbjct:   22 GLKKQSLDVSGAAAACCVGFFTLASGYRFGVLLLGFYFSGSKLTKVRASVKQQLDANYKQGGQRSARQVLACSLVATLIAVYFVVRFGHDDVALDFESAPESSFLLASYIGHYACCAADTWASELGVLSKSEPRLIMT-WKRVPPGTNGGVSVLGLAVSALGGAFIGALY------FATSLLS----------GTAQLHVVTLGAVTGLFGSALDSILGATLQATYYDRATRKICDEAPH--------VEHICGRKWLSNEQVNVVSTLVTTAVSGALATYLF 279          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7238.18369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2C6_9PHAE6.540e-13991.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMW9_ECTSI3.850e-10597.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V002_9STRA3.680e-8956.99Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2RII1_9STRA4.230e-7150.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K8YV45_NANGC1.050e-6644.06Uncharacterized protein (Fragment) n=2 Tax=Nannoch... [more]
A0A7S2N4E0_9EUKA7.320e-6546.01Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
R1C669_EMIHU1.060e-6446.10Uncharacterized protein (Fragment) n=2 Tax=Emilian... [more]
A0A3F2RXA6_9STRA3.440e-6446.45Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A1W0A0M5_9STRA5.980e-6446.81Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
M4C455_HYAAE6.580e-6448.41Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7238contigEcto-sp13_S_contig7238:1503..7641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score298.1
Seed ortholog evalue4.1e-78
Seed eggNOG ortholog2880.D8LMW9
Model size1588
Hectar predicted targeting categorysignal peptide
Exons8
EggNOG free text desc.PFAM Integral membrane protein DUF92
EggNOG OGsCOG1836@1,KOG4491@2759
Ec32 ortholog descriptionputative transmembrane protein
Ec32 orthologEc-02_003920.1
Cds size813
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7238.18369.1prot_Ecto-sp13_S_contig7238.18369.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7238 2238..7601 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463991.3300898-UTR-Ecto-sp13_S_contig7238:1502..22371681463991.3300898-UTR-Ecto-sp13_S_contig7238:1502..2237Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7238 1503..2237 -
1681463991.4400578-UTR-Ecto-sp13_S_contig7238:7601..76411681463991.4400578-UTR-Ecto-sp13_S_contig7238:7601..7641Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7238 7602..7641 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463991.3443928-CDS-Ecto-sp13_S_contig7238:2237..22881681463991.3443928-CDS-Ecto-sp13_S_contig7238:2237..2288Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7238 2238..2288 -
1681463991.3547876-CDS-Ecto-sp13_S_contig7238:3948..40601681463991.3547876-CDS-Ecto-sp13_S_contig7238:3948..4060Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7238 3949..4060 -
1681463991.3651257-CDS-Ecto-sp13_S_contig7238:4679..48601681463991.3651257-CDS-Ecto-sp13_S_contig7238:4679..4860Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7238 4680..4860 -
1681463991.375594-CDS-Ecto-sp13_S_contig7238:5363..54331681463991.375594-CDS-Ecto-sp13_S_contig7238:5363..5433Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7238 5364..5433 -
1681463991.3905342-CDS-Ecto-sp13_S_contig7238:6061..61341681463991.3905342-CDS-Ecto-sp13_S_contig7238:6061..6134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7238 6062..6134 -
1681463991.4010415-CDS-Ecto-sp13_S_contig7238:6550..67351681463991.4010415-CDS-Ecto-sp13_S_contig7238:6550..6735Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7238 6551..6735 -
1681463991.4173212-CDS-Ecto-sp13_S_contig7238:7007..71421681463991.4173212-CDS-Ecto-sp13_S_contig7238:7007..7142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7238 7008..7142 -
1681463991.4303002-CDS-Ecto-sp13_S_contig7238:7595..76011681463991.4303002-CDS-Ecto-sp13_S_contig7238:7595..7601Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7238 7596..7601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7238.18369.1

>prot_Ecto-sp13_S_contig7238.18369.1 ID=prot_Ecto-sp13_S_contig7238.18369.1|Name=mRNA_Ecto-sp13_S_contig7238.18369.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=271bp
MAAFFVGLVSLGLSLRLGLTLILFYKSSSILTKVGFERKAKLTDDYKEGG
QRGAAQVLSCSLFATILAVYHTAVTGAGDSLVDFEPDPLAGALLCAYLGF
YACCAGDTWSSELGVLSKTPPRLITKPWKTVPPGTNGGMSLMGTVASAAA
GVVMGAGFLCFGWIFRLSALSPAGHSSPSSSSSSQLPLVLLGGVSGLAGS
IFDSLMGAVLQASYFDTKRKVIVEKPSASSIAGGDLKRISGRDILTNEQV
NVVSAVVTSVLAGLLGSLLF*
back to top

mRNA from alignment at Ecto-sp13_S_contig7238:1503..7641-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7238.18369.1 ID=mRNA_Ecto-sp13_S_contig7238.18369.1|Name=mRNA_Ecto-sp13_S_contig7238.18369.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6139bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7238:1503..7641- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTGGTTTGAAGAAGAAGTCGCTCAACCGAAGCGGGGCAATGGCGGTGA GAGTATATCCGATCAAATGCAAAAGGTACACCCGCTGGGCTAAAGCTAGA CGCTGACATATCCGCCTGGCAATGCGTATGAGTGCAATGCCGTTGCCACA TTCCTATTTCGGGTGATCATGCCACGTGTTGTGAGTAAGGTTGCTGCTGC TTTGCTGCTGTCCAAACACGGACAAGTGGATAAATTACCTCCAATTTGCC CTGCAGTAATTCGCCGCGTTCCACATGCACACCATGCACACCGGAAAGCA TGGCCAACAGACTTACCATGGTGGTACTAACGCATACAGGCTGAATACTG CTTGCTGTTCTCAAGTTCATAATTTCTCCGCGGATACAATCTTCGATGTG CACGCTTTCCGTGCGGTTTCCGCGCCGCTCACTCGCACCTGTGTTGTCCC GCATACCTTTCTTATCTATGCTATCGGATGCTGCTGCTGCAACACGCAGG CGTTCTTCGTCGGGTTGGTTTCACTCGGACTCTCTCTGCGCCTTGGCCTG ACTTTGATCCTCTTCTACAAGTCGAGCTCCATCCTCACCAAAGTCGGCTT CGAGCGCAAGGCCAAGCTCACAGATGACTACAAGGTATGTGTCCGGTAGG TTGCGTAACGTAAGATGCCATGACCCCTTGGACCGATTTTCAGTACACAC CTCCCAACCTGTTGGTTGAAAGGAGAAGAGACACGAGAACGAACTCTCAA TATTGCGTCCCCACAACTAAACAATATGGAGTCACAAATACCCTAAACAA AATCAAGCCCCAACCAAAGACGTTTGTAGAGTTGTCTCAAAGGAGGGCCT TAGCAACGTTTCGTTTGGCGTCCTTCGTCTGCTGCTGTCTCTTTCCCTTT CTTTAGGAAGGGGGACAGCGCGGCGCCGCCCAGGTGCTGTCGTGCTCCCT CTTCGCAACCATCCTAGCGGTGTACCACACGGCTGTGACGGGGGCAGGAG ACAGCCTCGTGGACTTCGAGCCCGACCCGCTGGCCGGAGCGCTGCTCTGC GCTTACCTCGGTTTCTACGCGTGCTGCGCGGGCGACACTTGGTGAGGACT CGAACTCGACTATCGCAACACGTCTCCCAAGGTTTCTTTTTCTGACTGTA TATGTCGCAACGCGTCTCCCAGCGCTTCTTGTGACGGCGTATCGTCCTTG ACAGGGCTGCCGTGCTCGTTTCTCTACAGGTAGCATTCGAACAATCAAGC ACGTCTGCTGCTGTAGCTCTCTGCTGTTTTACTGCTGCGCCGGAGACGTA CGGCGTGGCGAGAGTGAGCGTGCTAGCCAGCTGTTCTACTCCGATTGGTG AGCACAAGCATGACGGTGGCCACCGAGCACAACACGTGCTGCCTTGTTCG CCCCGGACCGACTGACCTTGCGTCAATTGGCGCTCCTCTTCCGGCGGTAG TCTTATGTTCATGTGTGCTTAGCGCCACGCCCCCCCCCTTTCTTGCCATC CGTGCAGGAGCTCGGAGCTCGGCGTTCTCAGCAAGACGCCTCCTCGGCTG ATCACCAAGCCATGGAAAACCGTTCCTCCCGTGAGTAAAACCGCTTGTTT GCTTCTGCGGCGGCCGTCTGCTGCGCGCAAGCGGTGGGATTGCGGAAGCA GCGCAGAGTCGGTGCCAGCCTCCGAAGGATGGACAGCGCTGCGTCGTACT TCTGTAGAATATCGACTATCTTGTGTTTTTTTGTAGATATGTGGCGGTTT TGCCACCGTATGTGGCGGACCTGGGTTCGGCAGAGCATTCGAGGGCGGGC AGCCGGTTTTACGCGAGACGGGCGTTTCGATGATTTTAACGACGTCCAAA AGCACCTGGAGGCTCTTCAGGAGCTTCTGGTACTGCCCAAGTTACCCCTC TCTTCCTTCCTCTTCCCCTCTCGTTCCCTGACGATCACCACCTTCCACCT TCCCCTCGCTGGAAAGAACCGATGAATGGTTATCGCGTTATTTTTACAAC CATTTTTGATGCGAGTCATCTTGCACCCGATAAATCGAGAGCTAACCTCG TTCCAGGGCCGCTCCTGACCCTTACAATGTTCAACCGCATGCGTCTGTCT ACCCGTCTGTTCCGTGTCCGTGCGTCCTTGCGATGCTTCTTTTTCGCGCC CCCCGCTGGCTTTTCCCCTCGGTTCCGCGTCTACGGCGGGTGTTGTCATC ATGTCTAGGGGACGAACGGTGGCATGTCGCTGATGGGGACGGTGGCATCA GCGGCCGCCGGTGTGGTGATGGGCGCCGGTGGGTTTAGTTGAAATGGCAA CCTTCGTGGTGTGCTGTTTTTGGCGTTTTCTTCTGCCCGACCCGGTCCTA TGCAAACTGCATGGAGCGACGAATATGAACCCACCGAAAACTATCTACAG CTTCGCCCAGTACGTGGTCTGGTGCCATCTCCAGCAGGAAAAGGACCGGT GCTCCGTCTGCAAAGGGGTAACGCATGGTCCATGGTCAGATGCGCCCCTT CGTCGATATTTGTCGGAAACAGTACTTCAAAGTATAGCAGCAGCAGCAGC AGCAGCAGCGCCGGCCATTGCGTGGTGAAAGGGCACCCGTGTCAGCTTTG AAAACAAAAGGTGTTCGTTCAGCACGCCAACCCCAATACCCTGGCACGCC CGTCGCAAGCGCACACACTGCCGTCGTCGACAATACCGGCGTGTTTTCAC CCCGCCTGGGACCGGCCGCCTTCCTTCGCCCGTCACCCCCTCCTTTTGCG TGATCTCATGACCTTGTTTTGAACCATCAAGGCTTTCTGTGCTTCGGCTG GATCTTCCGGCTGTCTGCACTGTCCCCGGCTGGACACAGCAGTCCCTCCT CCTCCTCCTCTTCGCAACTCCCTCTGGTTTTGCTCGGGGGCGTGAGCGGA CTGGCGGGGTCTATCTTCGACTCGCTCATGGGCGCCGTCCTTCAGGCGTC GTACTTTGACACGTGAGGGAGACAAGCGGTCGGCGCGTCGTGTTGTGGTG GTTGTGTCGTTTTGCTGTTGTGCTCTGTGCCTCTCTTCGTCCAGGTCTAC ACATGTCCCTGATTATTTCGCTGCTGCGCATCCTCAATTGCACCGTGTGG TCGTAAACGTTCAGAACAAGTAAGAGGAACGAAAGGTGCGGTCGGGGACT AGACGCATCTTGGAGCCGGTTGTATTCCGGTGTTTTTTTATGATGTGCCT TCCTCACATTAATAGTAGAGGTTTGCACCCGCCGAGAACACGTGCTGTGT GACCCCGGCTTGATCACCTCAATTACAGAGGAAAAACCCCGCAGAATCCA TGTAAGATATTGCAGGCGACGTTTCATATATCTCAATTGAATGAGAAATT TAACAGTTTCGGTCTTCTCCTGCTAGATGCCCGTGCGTGTGTGCTCGGCA GCGAAACGAACGACGGCGAAAAAGAGGGATGGCACGGTCACCACACGTAG AGCAGCGGATTGTTCAATTCATTTGTGCGCGTTTGTGTCTAAATGACGTT GCCTTTCTAGACCAAAACAACGAAACGAATAGGCAGGACTGTTCAATGAA GAAACAAATCGCGCGCATGAAAAATAACCAGGAAGCGCAAGGTCATCGTC GAGAAACCGTCGGCGTCCTCGATCGCGGGTGGAGACTTGAAGAGGATATC CGGTCGAGATATCCTTACCAATGAGCAAGTGAACGTAGTGTCGGTGAGAG CATTTTGGTGTCTGGTCTTCTATCGGTACTAGCCAAGCTTGACGGGGATG AGTTTAAGAACCAACTCTACACCCTGCACGGTGTGTACGTGTCAGACACT GGCCGGACAATTCCGTTTGTGCTTCGTCCTGTTGTGAGAAAACCCCCAAA CTCCTCCAGCCTCCACCTGGAGGTACATGGCTGAGGAGTCCACCAAGAAG ACAGCACCAATAAGACAAGACAGGGTAAGCGGGCTCTCCGGCGGAAGCTC CGACAAATGTGTGCTGTCTCGTCCCCCTTGCTGGCTTTCATCTGTCCAGC GACTCGGTCCACTCTGTGCTGCTTGCCCTTCCGCTTGCGAGCATGTCCTT CACCATTTGGTTGCAGCTAACGTTGAGTCCGATGTTAGCTGCATCCAATG GCAAAGAGGAATCTTTCAAGCATAGGGTTCCCAGAACACAATGGATTTCG AGTTGCTCAGCTGTTGAAAGACAACGATCGGGGTGCTTAGAGTCAAAGCG CCCACCGAAATGATTCCACTTAGCATGTCTTATCTTTTTGATGCTGTCTT TATTGTTGGTGCCTTAGCCAAGTACCTTCGGGTTAAAGATGAAAGAGTTG AGGGTGTCCCTCCTGACAGACTATGCACAGACGGAATTTTCCGTCCAGTT TCACGTGACATGTACACACCGTACATGGTAGAGTTAGTATTGAACTCATC TCTCATCCAGCGTGGTTCCGTGTCACAGGGGTCGAAAGATGCCAATAACG CCCCGTGGCACCTGCTCTTATGTTGCGAACGCTGGTGACTCACTGCGGCC TGACCTTGTAGTCCTGGGTCTTCTCGCGGCATCTGAAGCTGTTGTCTCGC GATCGGGTCTTGGCTTGATTTGAGCTCAGATCAACGGTCTCACTGCGTCC GAATAGCGCAACGGCACCTGTGATCCGAACGACAGGTGGGCAAGTGTACG TATGATACGGTCACGTAAGTGGACAGGCTTCTCTTTCTCCTTTTTCCGGG GTGGTTTTGATTAAAAAAACTGCGTGCTAGATAGACAGGTCTCAGGCCGA GACTATCTCCTTGAATAAACGTAAGTGCTGCCTATTCGTCTAAGGTGCGG CTTCGCCACCGACGCTTCGACACCCTTTGGGACAGATGCCTCTCACGTAA CCCTTGTATCGTGACCAGTACGGAATGTCACGTACGTACTCGGATTCGGC CACGGCATCGTCGCGTTTGAATGTGTCCACACGCCGCTGTCCTGCTGTAG TCGTTCGGATACGTTTCAAATTTCGCTGCTCATGCGGCATGTTTGAGCAC CAATAAACGAGAACATGGAAAACGAAGTTGACCGTACACTTCCAATGTAC GGGCAGAGGTTTGGTTCCTTTTTTGTTTTGCTTTTTCAACGCCTTCCGGC ACGTCGCCCCTGCTGGAATAGTGAAAGGGCCCTCCTACGGCTTTGCAGAG TTTACCATAGACTTGCCCTGCTTGACTGATGATTTCAGCTTTTCCCGCGT CCTCGGTATCATCATCTCTCTCTTCCTCTCTCTATCGCCTGCCCTCTACC TCTGTCCCTTCCGTATTTGGTGCTGTCTTTCTGTCTGTCCGCCTCCCTCT GTCTGCCTCCCTCTCTCGTCCCCTCTCTCTTTCTCTCTCGTCTCATTCGA CAGGCGGTAGTGACATCCGTTCTGGCTGGACTGTTAGGGTCCCTGTTGTT TTGAAAAAGATCCATCCAGCGATTGTAGGCGGCTCACGCTTTCGAGTCTT TGCACTGCCCGATCGCGTCGGCGACATGGCGTCGACAAGCTAAGCTTAGC TCGGCCGGAACAATTCTGTGTTTTCTATTCGTGGTCGTCCTTGTAGGCAT CTGCATGCCTCCTTGTTCGTGCAGCACCCGGACGAGAGCCAAGCAGTCGA TGGGGGAGGAGGGTGCAGTAGCACAACACGTGGGATGTGCAATGTAATTA ACAAATGAGTCATGTGTGCGTGATTTGTGCGCACACGTACGCACTCATGG GTTGGTTTGTGAGTTTGTGGGTGGGTGGGTGCGGCTACTCCTTTCCGCAA GGTCGATCGGACACCTGTCAAAAAGGGCCAAGCACGGGAAAATAATGCCC CGTTTCTTTCATAACTTACGAGAAGAACTTGAGGCTCGAAAGATGGAGAC TTGAGGAGTTGACGATGAGAACAGGCGCTTAGTGAGGAGACCTCTGCTCA AACCTCTATATGGGCTCAGTTGGATGCTTGCGTGGTGGCGCCTTCGCCAT GTCTTGTGCAGGAAGGTTTTGTGTGAGCGCGTACGGCGTGCGGTCTTAGG GCTTTGGGCCATGGTCCCAGATGACGTGGCTTTTGTTCGAGGACTCGGTG CCATACAGTTGTTCTGCGGAGATTATCATCTCCTGAACGGGCCTTTTTGT GTCTTCATCCCGATAGATAACCGTCGCTCGCAGTTTTTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7238:1503..7641-

>mRNA_Ecto-sp13_S_contig7238.18369.1 ID=mRNA_Ecto-sp13_S_contig7238.18369.1|Name=mRNA_Ecto-sp13_S_contig7238.18369.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7238:1503..7641- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCGTTCTTCGTCGGGTTGGTTTCACTCGGACTCTCTCTGCGCCT
TGGCCTGACTTTGATCCTCTTCTACAAGTCGAGCTCCATCCTCACCAAAG
TCGGCTTCGAGCGCAAGGCCAAGCTCACAGATGACTACAAGGAAGGGGGA
CAGCGCGGCGCCGCCCAGGTGCTGTCGTGCTCCCTCTTCGCAACCATCCT
AGCGGTGTACCACACGGCTGTGACGGGGGCAGGAGACAGCCTCGTGGACT
TCGAGCCCGACCCGCTGGCCGGAGCGCTGCTCTGCGCTTACCTCGGTTTC
TACGCGTGCTGCGCGGGCGACACTTGGAGCTCGGAGCTCGGCGTTCTCAG
CAAGACGCCTCCTCGGCTGATCACCAAGCCATGGAAAACCGTTCCTCCCG
GGACGAACGGTGGCATGTCGCTGATGGGGACGGTGGCATCAGCGGCCGCC
GGTGTGGTGATGGGCGCCGGCTTTCTGTGCTTCGGCTGGATCTTCCGGCT
GTCTGCACTGTCCCCGGCTGGACACAGCAGTCCCTCCTCCTCCTCCTCTT
CGCAACTCCCTCTGGTTTTGCTCGGGGGCGTGAGCGGACTGGCGGGGTCT
ATCTTCGACTCGCTCATGGGCGCCGTCCTTCAGGCGTCGTACTTTGACAC
GAAGCGCAAGGTCATCGTCGAGAAACCGTCGGCGTCCTCGATCGCGGGTG
GAGACTTGAAGAGGATATCCGGTCGAGATATCCTTACCAATGAGCAAGTG
AACGTAGTGTCGGCGGTAGTGACATCCGTTCTGGCTGGACTGTTAGGGTC
CCTGTTGTTTTGA
back to top