mRNA_Ecto-sp13_S_contig7238.18368.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7238.18368.1
Unique NamemRNA_Ecto-sp13_S_contig7238.18368.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7238.18368.1 vs. uniprot
Match: A0A6H5K4B7_9PHAE (GAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B7_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.830e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 MHFTPQDMAIIGAFLSLLGPRIFASSMLQPKRKMHIKV 114
            MHFTPQDMAIIGAFLSLLGPRIF SSMLQPKRKMHIKV
Sbjct:  132 MHFTPQDMAIIGAFLSLLGPRIFESSMLQPKRKMHIKV 169
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BLAST of mRNA_Ecto-sp13_S_contig7238.18368.1 vs. uniprot
Match: D8LMW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW7_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.480e-14
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 MHFTPQDMAIIGAFLSLLGPRIFASSMLQPKRKMHIKV 114
            MHFTPQDMAIIGAFLSLLGPRIFASSMLQPKRKMHIKV
Sbjct:  530 MHFTPQDMAIIGAFLSLLGPRIFASSMLQPKRKMHIKV 567
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7238.18368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K4B7_9PHAE3.830e-1597.37GAF domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMW7_ECTSI1.480e-14100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7238contigEcto-sp13_S_contig7238:2..1130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score80.1
Seed ortholog evalue7.1e-13
Seed eggNOG ortholog2880.D8LMW7
Model size446
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.3',5'-cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG3689@1,KOG3689@2759
Cds size330
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463991.279895-CDS-Ecto-sp13_S_contig7238:1..1121681463991.279895-CDS-Ecto-sp13_S_contig7238:1..112Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7238 2..112 +
1681463991.2906816-CDS-Ecto-sp13_S_contig7238:795..10141681463991.2906816-CDS-Ecto-sp13_S_contig7238:795..1014Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7238 796..1014 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463991.3003192-UTR-Ecto-sp13_S_contig7238:1014..11301681463991.3003192-UTR-Ecto-sp13_S_contig7238:1014..1130Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7238 1015..1130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7238.18368.1prot_Ecto-sp13_S_contig7238.18368.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7238 2..1014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7238.18368.1

>prot_Ecto-sp13_S_contig7238.18368.1 ID=prot_Ecto-sp13_S_contig7238.18368.1|Name=mRNA_Ecto-sp13_S_contig7238.18368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
MHFTPQDMAIIGAFLSLLGPRIFASSMLQPKRKMHIKVNKVGDDEEAFPE
NQGIMDVMKRRQKSTGSLVIGLDAQRFEESENEDEDEEGAADNDREATSS
LGSSSVQSK*
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mRNA from alignment at Ecto-sp13_S_contig7238:2..1130+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7238.18368.1 ID=mRNA_Ecto-sp13_S_contig7238.18368.1|Name=mRNA_Ecto-sp13_S_contig7238.18368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7238:2..1130+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACTTCACTCCTCAAGACATGGCCATCATCGGAGCCTTCCTGTCTCT
GCTCGGCCCCCGCATCTTCGCGTCCAGCATGCTGCAGCCGAAGCGCAAAA
TGCACATCAAGGCATGTTGCTTTTGTTGTAAAAGAGTGTTAAATGTACGT
CCCCCTCCTCGCCTGTCCTCAAGTTAGCATCCACTCAGGTACCGAGGAAA
TCACTCCGATCCCACATGTATGCCGACTCCCTCTCAAATGTTATCCTCTC
ATTCTCAGTACGTGCCACTGATGTTCAAGGTTGACAGCGATTGGTTCAAT
TCCATCGCCGGACCCACAGCTTGTTGTTTTTAACCACCTCTGAAGGGGCA
GAAAACTGCGGGTTCGTTATGCGGGGGGCGCTCATTAGCGAAATTACCAT
TATGTGTTACTTCGAAGTAGGATTTTAGCCTATCCTGATGATCTTGGTGA
CACCTCTGTCGGGGTCTCTCTTGCGCTCGAGTGCCGTGGGGAGAAACTTT
CTCGAAGCTAAATGTGAACAAAGGTGTCGTGCTCGATTGTCACAGTGTGC
GATGCTTAGGTCCGTTCGGGGAAAACGCGACATAGTGGGCCCCGAACCGC
CGATTGTCACAGTGTGCGATGCTTACGTCCGTTCGGGGAAAACGCTACAT
AGTGGCCCCGAACCGCCCTTCAGGGTACGGTACAGTACTAGATGGCCCCT
TCCGCCGTAATCGCCGTGGCTCTCGATGTAGAGTCCAACACCATCGATTC
TCTTGCGCCTATCGGTGCGTCAATCAAAATGCGTGTGCACCCAGGTGAAC
AAAGTCGGCGACGACGAGGAAGCGTTCCCCGAGAACCAAGGAATCATGGA
CGTAATGAAACGGAGGCAGAAGTCGACGGGCTCCCTTGTGATTGGCCTGG
ATGCTCAGCGATTCGAGGAGAGCGAGAACGAGGACGAAGACGAGGAAGGG
GCGGCTGACAACGACCGCGAAGCCACGTCTAGCCTGGGAAGCTCTTCCGT
CCAGTCCAAGTGAACGAGCTGCTCGACTTGTTTTCGCGAGCGGAAAAACG
TCGACGTGTGTTGTAAAACGGCCAGCCGAGAAGTTTCTCTCGAGTGACTG
CTTTGACACTCTGATCACAAAAATGGCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7238:2..1130+

>mRNA_Ecto-sp13_S_contig7238.18368.1 ID=mRNA_Ecto-sp13_S_contig7238.18368.1|Name=mRNA_Ecto-sp13_S_contig7238.18368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7238:2..1130+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACTTCACTCCTCAAGACATGGCCATCATCGGAGCCTTCCTGTCTCT
GCTCGGCCCCCGCATCTTCGCGTCCAGCATGCTGCAGCCGAAGCGCAAAA
TGCACATCAAGGTGAACAAAGTCGGCGACGACGAGGAAGCGTTCCCCGAG
AACCAAGGAATCATGGACGTAATGAAACGGAGGCAGAAGTCGACGGGCTC
CCTTGTGATTGGCCTGGATGCTCAGCGATTCGAGGAGAGCGAGAACGAGG
ACGAAGACGAGGAAGGGGCGGCTGACAACGACCGCGAAGCCACGTCTAGC
CTGGGAAGCTCTTCCGTCCAGTCCAAGTGA
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