prot_Ecto-sp13_S_contig7238.18368.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7238.18368.1
Unique Nameprot_Ecto-sp13_S_contig7238.18368.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length110
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7238.18368.1 vs. uniprot
Match: A0A6H5K4B7_9PHAE (GAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B7_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.100e-15
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 0 
Query:    1 MHFTPQDMAIIGAFLSLLGPRIFASSMLQPKRKMHIKV 38
            MHFTPQDMAIIGAFLSLLGPRIF SSMLQPKRKMHIKV
Sbjct:  132 MHFTPQDMAIIGAFLSLLGPRIFESSMLQPKRKMHIKV 169
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BLAST of mRNA_Ecto-sp13_S_contig7238.18368.1 vs. uniprot
Match: D8LMW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW7_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 4.010e-15
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0 
Query:    1 MHFTPQDMAIIGAFLSLLGPRIFASSMLQPKRKMHIKV 38
            MHFTPQDMAIIGAFLSLLGPRIFASSMLQPKRKMHIKV
Sbjct:  530 MHFTPQDMAIIGAFLSLLGPRIFASSMLQPKRKMHIKV 567
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7238.18368.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K4B7_9PHAE1.100e-1597.37GAF domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMW7_ECTSI4.010e-15100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..109
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7238contigEcto-sp13_S_contig7238:2..1014 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7238.18368.1mRNA_Ecto-sp13_S_contig7238.18368.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7238 2..1130 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7238.18368.1 ID=prot_Ecto-sp13_S_contig7238.18368.1|Name=mRNA_Ecto-sp13_S_contig7238.18368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
MHFTPQDMAIIGAFLSLLGPRIFASSMLQPKRKMHIKVNKVGDDEEAFPE
NQGIMDVMKRRQKSTGSLVIGLDAQRFEESENEDEDEEGAADNDREATSS
LGSSSVQSK*
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