mRNA_Ecto-sp13_S_contig7234.18364.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7234.18364.1 vs. uniprot
Match: D8LIF7_ECTSI (Transmembrane protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF7_ECTSI) HSP 1 Score: 319 bits (818), Expect = 1.300e-102 Identity = 185/188 (98.40%), Postives = 185/188 (98.40%), Query Frame = 3
Query: 3 VKKIADQLEESERNATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPGLTASMPPDPSQKIPPEARGRVRRXXXXXXXXXXXARGSTAGFPSATPARLAHGGAGAGEDGGDANRTFVTSRGFPEVDHLGVVDGQAA 566
VKKIADQLEESERNATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPGLTASMPPDPSQKIPPEARGRVRRXXXXXXXXXXXARGSTAGFPSATPA LA GG GAGEDGGDANRTFVTSRGFPEVDHLGVVDGQAA
Sbjct: 31 VKKIADQLEESERNATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPGLTASMPPDPSQKIPPEARGRVRRXXXXXXXXXXXARGSTAGFPSATPAELAQGGTGAGEDGGDANRTFVTSRGFPEVDHLGVVDGQAA 218
BLAST of mRNA_Ecto-sp13_S_contig7234.18364.1 vs. uniprot
Match: A0A6H5JCX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX9_9PHAE) HSP 1 Score: 318 bits (816), Expect = 4.350e-102 Identity = 184/188 (97.87%), Postives = 184/188 (97.87%), Query Frame = 3
Query: 3 VKKIADQLEESERNATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPGLTASMPPDPSQKIPPEARGRVRRXXXXXXXXXXXARGSTAGFPSATPARLAHGGAGAGEDGGDANRTFVTSRGFPEVDHLGVVDGQAA 566
VKKIADQLEESERNATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPGLT SMPPDPSQKIPPEARGRVRR XXXXXXXXXXARGSTAGFPSATPA LA GGAGAGEDGGDANRTFVTSRGFPEVDHLGVVDGQAA
Sbjct: 46 VKKIADQLEESERNATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPGLTVSMPPDPSQKIPPEARGRVRRKXXXXXXXXXXARGSTAGFPSATPAGLAQGGAGAGEDGGDANRTFVTSRGFPEVDHLGVVDGQAA 233
BLAST of mRNA_Ecto-sp13_S_contig7234.18364.1 vs. uniprot
Match: A0A836C7C9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7C9_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.660e-26 Identity = 69/95 (72.63%), Postives = 81/95 (85.26%), Query Frame = 3
Query: 3 VKKIADQLEESERNATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVM 287
VKKIADQLEESER A E+ L++ RKEA FR QQQ+ELQALL RIDARR+EH+KQR LDSKRLLQRNRNVQ VLE+KQ+ EG +LT EI+K+V+
Sbjct: 165 VKKIADQLEESEREAMHESHALYVGRKEAGFRAQQQAELQALLMRIDARRREHLKQRALDSKRLLQRNRNVQAVLEAKQSSEGQRLTAEIRKTVL 259
BLAST of mRNA_Ecto-sp13_S_contig7234.18364.1 vs. uniprot
Match: A0A6V1W3Y9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1W3Y9_HETAK) HSP 1 Score: 116 bits (290), Expect = 2.020e-24 Identity = 68/100 (68.00%), Postives = 80/100 (80.00%), Query Frame = 3
Query: 3 VKKIADQLEESERNATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSV-MGTIP 299
+KKIADQ+EE ER A ++ ARKEA FR QQQ+ELQALLKRIDARRKEH+KQR +DSKRLLQRNRNVQ VLESKQNVE +L E+KK++ T+P
Sbjct: 248 IKKIADQMEERERQAMQQSNAAVFARKEAKFRQQQQAELQALLKRIDARRKEHVKQRAVDSKRLLQRNRNVQAVLESKQNVECNRLFAEVKKTIHRSTLP 347
BLAST of mRNA_Ecto-sp13_S_contig7234.18364.1 vs. uniprot
Match: A0A7S2XWE0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWE0_9STRA) HSP 1 Score: 115 bits (287), Expect = 2.220e-24 Identity = 65/94 (69.15%), Postives = 77/94 (81.91%), Query Frame = 3
Query: 3 VKKIADQLEESERNATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSV 284
VKK+ADQ+E+ ER A + ARKEA FR QQQ+ELQALLKRIDARRKEHIKQRN+DSKRLLQRNRNVQ VLESKQ VE ++ ++IKK++
Sbjct: 214 VKKVADQMEDRERQAMQQQNAAVFARKEAKFRAQQQAELQALLKRIDARRKEHIKQRNIDSKRLLQRNRNVQAVLESKQTVECNRVYQDIKKNL 307
BLAST of mRNA_Ecto-sp13_S_contig7234.18364.1 vs. uniprot
Match: A0A7S2WV09_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV09_9STRA) HSP 1 Score: 115 bits (288), Expect = 2.900e-24 Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 3
Query: 3 VKKIADQLEESERNATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSV 284
+KKIAD+LE+ ER ++ + ARKEA FR QQQ+ELQALLKRIDARRKEHIKQRNLDSKRL+QRNRNVQ VLESKQ VE ++ EI+K++
Sbjct: 239 IKKIADKLEDKERKGVEQDTAIIFARKEAQFRQQQQAELQALLKRIDARRKEHIKQRNLDSKRLMQRNRNVQAVLESKQAVESNRIFSEIRKNL 332
BLAST of mRNA_Ecto-sp13_S_contig7234.18364.1 vs. uniprot
Match: A0A8K1C4N3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4N3_PYTOL) HSP 1 Score: 112 bits (281), Expect = 2.120e-23 Identity = 63/95 (66.32%), Postives = 74/95 (77.89%), Query Frame = 3
Query: 3 VKKIADQLEESERNATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVM 287
+KKIAD++E+ ERN E + ARKEA R QQQ+ELQALLKRID RRKEH+KQRNLDSKRLLQRNRNVQ VLESKQ E K ++IK S++
Sbjct: 236 IKKIADEMEDDERNKMNEEFQAIFARKEAKLRQQQQAELQALLKRIDGRRKEHLKQRNLDSKRLLQRNRNVQAVLESKQATEATKRLQDIKMSLL 330
BLAST of mRNA_Ecto-sp13_S_contig7234.18364.1 vs. uniprot
Match: K3WGJ8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGJ8_GLOUD) HSP 1 Score: 110 bits (276), Expect = 5.200e-23 Identity = 68/118 (57.63%), Postives = 81/118 (68.64%), Query Frame = 3
Query: 3 VKKIADQLEESERNATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPGLTASMPPDPSQKIPPEAR 356
+KKIAD++EE ER+ E RKEA R QQQ+EL ALLKR+D RRKEH+KQRNLDSKRLLQRNRNVQ VLESKQ VE K ++IK S++ S+P IPP+AR
Sbjct: 187 IKKIADEIEEDERSKMNEEHRQIFTRKEAKLRQQQQAELHALLKRVDGRRKEHLKQRNLDSKRLLQRNRNVQAVLESKQIVEATKKLQDIKMSLLPK----ERSIPRGSYNVIPPQAR 300
BLAST of mRNA_Ecto-sp13_S_contig7234.18364.1 vs. uniprot
Match: A0A067CTU6_SAPPC (EF-hand domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CTU6_SAPPC) HSP 1 Score: 109 bits (272), Expect = 3.440e-22 Identity = 70/118 (59.32%), Postives = 80/118 (67.80%), Query Frame = 3
Query: 3 VKKIADQLEESERNATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPGLTASMPPDPSQKIPPEAR 356
+K IAD LE +ER EN + RKE FR QQQ+E+QALLKRID RRKEHIKQRNLDSKRLLQRNRNVQ VLESKQ+VE K ++I+ G P + P IPPEAR
Sbjct: 236 IKLIADDLEAAERANVNENLQVIFTRKETKFRQQQQAEIQALLKRIDGRRKEHIKQRNLDSKRLLQRNRNVQAVLESKQSVEATKKLQDIR---AGLNPR-DRIVSKHPQSVIPPEAR 349
BLAST of mRNA_Ecto-sp13_S_contig7234.18364.1 vs. uniprot
Match: A0A7S2GCP4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GCP4_9STRA) HSP 1 Score: 108 bits (271), Expect = 5.750e-22 Identity = 67/112 (59.82%), Postives = 81/112 (72.32%), Query Frame = 3
Query: 3 VKKIADQLEESERNATTENWGLFLARKEAAFRGQQQSELQALLKRIDARRKEHIKQRNLDSKRLLQRNRNVQTVLESKQNVEGLKLTEEIKKSVMGTIPGLTASMPPDPSQK 338
+K IAD+LE E+ A ++ ARKEA FR QQQ+ELQALLKRIDARRKEHIKQRNLDSKRL+QRNRNVQ VLESKQ VE ++ +I+K++ T + PP S K
Sbjct: 231 IKIIADKLENKEKAALEQSTASLFARKEAQFRQQQQAELQALLKRIDARRKEHIKQRNLDSKRLMQRNRNVQAVLESKQAVESNRIFADIRKNLYQVA--YTKAPPPPKSAK 340 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7234.18364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7234.18364.1 >prot_Ecto-sp13_S_contig7234.18364.1 ID=prot_Ecto-sp13_S_contig7234.18364.1|Name=mRNA_Ecto-sp13_S_contig7234.18364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp MGTIPGLTASMPPDPSQKIPPEARGRVRRKKKASASGGGGARGSTAGFPSback to top mRNA from alignment at Ecto-sp13_S_contig7234:3982..7206- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7234.18364.1 ID=mRNA_Ecto-sp13_S_contig7234.18364.1|Name=mRNA_Ecto-sp13_S_contig7234.18364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7234:3982..7206- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7234:3982..7206- >mRNA_Ecto-sp13_S_contig7234.18364.1 ID=mRNA_Ecto-sp13_S_contig7234.18364.1|Name=mRNA_Ecto-sp13_S_contig7234.18364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7234:3982..7206- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |