mRNA_Ecto-sp13_S_contig7234.18363.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7234.18363.1
Unique NamemRNA_Ecto-sp13_S_contig7234.18363.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7234.18363.1 vs. uniprot
Match: D8LIF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF6_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 1.270e-106
Identity = 179/202 (88.61%), Postives = 188/202 (93.07%), Query Frame = 1 
Query:   10 GKVSELSLRREELQKHVVVLQSGEEVQGSRRKAAEAFALAERQDELLEDASARFGHLKAESKLLREELAKTRESSETAKNILEPVLQGARSQLGLESDGSCDRHPTAMATATRKQRRKHAHWFNSECGSQEDFELQNGAGQRQARLDEAGEDEVELEDLAREAADVLLHVLVGAEVDHGMSESQEPEGRNGRTRWTATRFQD 615
             KVSELSLR EELQKHVVVL+SGEEVQGSRRKAAEAFALAERQD+LLED SAR GHLKAESKLL+EELAKTR+SSETAKNILEPVLQGARSQLGLES GSCDRHPT MA ATRKQRR+ AH FNSECGSQEDFE++NGAGQRQARLDE GEDEVELEDLARE ADVLLHVLVG EV HGM E++EPEGRNGRTRWTATRFQD
Sbjct:   76 SKVSELSLRCEELQKHVVVLKSGEEVQGSRRKAAEAFALAERQDQLLEDTSARLGHLKAESKLLQEELAKTRKSSETAKNILEPVLQGARSQLGLESGGSCDRHPTTMAAATRKQRRQQAHSFNSECGSQEDFEVENGAGQRQARLDEEGEDEVELEDLAREVADVLLHVLVGTEVGHGMGENKEPEGRNGRTRWTATRFQD 277
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7234.18363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIF6_ECTSI1.270e-10688.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7234contigEcto-sp13_S_contig7234:5..3922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1911
Hectar predicted targeting categoryother localisation
Exons6
Cds size1116
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7234.18363.1prot_Ecto-sp13_S_contig7234.18363.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7234 1084..3457 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463990.910419-UTR-Ecto-sp13_S_contig7234:4..1091681463990.910419-UTR-Ecto-sp13_S_contig7234:4..109Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7234 5..109 +
1681463990.9204242-UTR-Ecto-sp13_S_contig7234:459..5481681463990.9204242-UTR-Ecto-sp13_S_contig7234:459..548Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7234 460..548 +
1681463990.9301789-UTR-Ecto-sp13_S_contig7234:947..10831681463990.9301789-UTR-Ecto-sp13_S_contig7234:947..1083Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7234 948..1083 +
1681463990.9945598-UTR-Ecto-sp13_S_contig7234:3457..39221681463990.9945598-UTR-Ecto-sp13_S_contig7234:3457..3922Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7234 3458..3922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463990.944128-CDS-Ecto-sp13_S_contig7234:1083..12211681463990.944128-CDS-Ecto-sp13_S_contig7234:1083..1221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7234 1084..1221 +
1681463990.9607537-CDS-Ecto-sp13_S_contig7234:1397..15441681463990.9607537-CDS-Ecto-sp13_S_contig7234:1397..1544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7234 1398..1544 +
1681463990.9721868-CDS-Ecto-sp13_S_contig7234:1984..25351681463990.9721868-CDS-Ecto-sp13_S_contig7234:1984..2535Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7234 1985..2535 +
1681463990.9837298-CDS-Ecto-sp13_S_contig7234:3177..34571681463990.9837298-CDS-Ecto-sp13_S_contig7234:3177..3457Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7234 3178..3457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7234.18363.1

>prot_Ecto-sp13_S_contig7234.18363.1 ID=prot_Ecto-sp13_S_contig7234.18363.1|Name=mRNA_Ecto-sp13_S_contig7234.18363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=372bp
MATATRKQRRKHAHWFNSECGSQEDFELQNGAGQRQARLDEAGEDEVELE
DLAREAADVLLHVLVGAEVDHGMSESQEPEGRNGRTRWTATRFQDAGEHA
WTSTRRRGSARRNSQSKGPLRTSNLTASSPRCGIEDAEEELQSRHHRRRP
VGQGTPDHGGTYRAKDGSASIGGNYERASATNGATSISAENRGGTGGTSA
KSSCELSPGAVHYDQRSGVGARRRARSERGVAGAEAVAMPNHDAVRRMEG
IRRGGGEDGGATLLHGVKSTRRGHLQGGRPPTSIADSWMNTLLDGSRLSA
SAEKDASAEKDTLLSTALAGKSRPRAWVRGCRDDSRQRTTSLGCQSPSTR
KICQRIHDAQTALRTLRRTTD*
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mRNA from alignment at Ecto-sp13_S_contig7234:5..3922+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7234.18363.1 ID=mRNA_Ecto-sp13_S_contig7234.18363.1|Name=mRNA_Ecto-sp13_S_contig7234.18363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3918bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7234:5..3922+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCACCACGGAAAGGTCTCCGAGCTGTCACTTCGGCGTGAGGAGCTGCA
AAAGCACGTTGTGGTACTACAATCAGGCGAAGAGGTTCAGGGTTCTCGCC
GAAAGGTAAACTGTCTTTGGTTTGGGCATCACAAGAATGCTGGAGAAGCA
TCAACAATAGTTCGGTCATGGGCCTTCCTATCATGCAAGCCGCCCACTGA
GTTAGACGTCCATTGTGTCTCATTCGCGACTCTCACGGAGCACAATTTCA
CAGTAGCATCGTGTTTGCTTCTGACCGATTTCGGTGATAGCGGTCTTCGC
TTTGCGTATTGAGTTTTTGCCGTCTGAACCCTGTATACCTACAGTTTGCT
TCATTTCGTCCCTGCGCATGCTGCATGAGGACGATACGGGGAAAAGGTTT
CTAGTCCGTTGCGATGCGTAATTTCCCTGGCTCACGTGCAAAAACCAACC
GGCAGGCAGCGGAGGCGTTCGCTCTGGCGGAGAGACAAGACGAACTCTTG
GAAGACGCGTCGGCTAGGTTTGGCCACCTTAAAGCCGAGTCAAAGTGAGG
CACAATATATGTTCTTGGAGGCTCTTTGTCGTTTAACATATTTCGGCCAG
AAATAGATGCACATGTCGGTGTGACTCGTTCAGCATGTTGAAGAGTCACA
TCTACAGCGCTAATGCCTGACACTTCAGTCCTCAGACCCCTTCCCTGTGT
CCCACTGGCGCTGCTCTATTTGTATGTAGTTCTGCACGTAGCACTTCAAG
AGGCAGAGGTTGTTCGAGACAACATGAGAAGATATCCCTGACGCACCGAC
GCAAGTTTCGATTCTACCGAACTTTAAGCAGAGATTATCATCTCAAAACG
GGTTGTGCTGTCAACTTTCAACAGTTGAGGAAAGCAACAAATGAATACGT
ACCCCCCCCCACGTCGCAAAACTCCGCCCGCTCGTTTGGAAAGGCTCCTT
CGGGAAGAGTTGGCCAAAACCAGAGAAAGTTCCGAAACCGCCAAAAATAT
CCTCGAACCGGTGCTCCAAGGCGCTAGGTCTCAGCTGGGACTGGAGTCGG
ACGGTTCTTGTGATCGCCACCCAACAGCAATGGCTACGGCGACGCGAAAA
CAGCGTCGCAAGCACGCGCACTGGTTCAACAGCGAATGCGGGAGCCAGGA
AGACTTTGAGCTCCAAAACGGTGCCGGCCAAAGACAAGCCCGGTTGGATG
AGGCGGGCGAAGACGAGGTGAACGCTGTGCGAAAAGAACGGAGACTTACT
TGGTCTTTGGGGGCGCACGGGGAGCTCGACAAACAGCAACCTTTATTGCT
TCTGTTGTCGCGGGGCAGGGCCTTTTGTCGAAAATACTGACTGCGGGGAC
AAACTTGTGGTGCCATGTACTTGAACGTTTGCGCGGGTAGCAGGTGGAAT
TGGAGGATTTGGCCAGAGAAGCTGCCGACGTTCTCTTGCATGTGCTTGTC
GGGGCCGAGGTCGATCACGGAATGAGCGAAAGTCAGGAACCAGAAGGGCG
AAATGGAAGGACGAGGTGGACAGCAACCAGGTTTCAGGACGTGAGCTGAC
ATTTTCTCGTCAGTGCACCTCCACTGCTGTTGCCTGGTGTTGCCAGGAGG
ATCGTTCTTTGGTTTGACCGGTCAAATTTTTGAGGAAATGTGTGCAAGTG
CTTCTTGTTTTGGGATCTCGAATCGGTCCACACGACACAACAGCTGGTTG
TAGTGGTGCTGCAACCCTTCGCAAGGACGATCCAATTTCGTTTGGTTTTC
CTTTCGGCAAGGGCAGTATTGATGTTTCACGCGCAAAGTGTTGAATAGAA
TCTCACGCCATGAGCGTAAACTGTAACCCTCAACGTTGATCCCTTGGGTT
CGATTCACTGGCACCTTGAGTACAGAATCCAAACTAAGGCTACTTCGATG
GGTTCCGCCCCTTGCAGTGTCTCGACGTTGCTGCATGCACTATCTTCCGC
TGTCTGCAATCTGCATCAAACATGCTCCAGGCAGGGGAACATGCTTGGAC
CTCAACCCGTCGAAGAGGTTCTGCCCGCAGAAACTCTCAGTCCAAAGGAC
CTTTACGCACCTCGAATCTCACAGCATCATCACCACGGTGTGGCATAGAG
GACGCAGAAGAAGAACTCCAGTCGCGACACCATCGGCGGCGGCCGGTTGG
TCAAGGAACTCCCGATCACGGGGGAACATATCGCGCCAAAGACGGAAGCG
CCAGTATCGGCGGAAATTACGAGCGTGCCAGCGCTACAAACGGGGCTACG
AGCATCAGCGCGGAGAATAGAGGCGGGACTGGTGGGACAAGCGCTAAGTC
GTCTTGTGAGCTGAGCCCGGGGGCCGTACACTATGATCAAAGGAGCGGAG
TTGGTGCAAGAAGACGCGCAAGAAGTGAGAGAGGAGTTGCGGGCGCGGAG
GCAGTCGCAATGCCTAATCACGACGCCGTTCGACGTATGGAAGGCATTCG
AAGAGGAGGGGGTGAGGACGGGGGAGCGACGCTGCTTCATGGGGTGAAGT
CGACACGACGTGGTCACCTTCAAGGGGGAAGGTATGCAAGTGTTCCTACA
GACCTCGAGCAATGCTGTGCGATTAAATACAACAGTCGATAATTCGCTTT
TTGTTTGTGGAGTGCGTTCTTGAGTTGAGGTTTGGCTAAAGAATGTGGAC
GGTGAAGTAGGTGCTGAAAAAAAGCATCACAGCTCAGTGAGCATCCTTAC
CCAAGACGTTGAGAGGGAACGCTCCCGTCGAGACCGTATATGTATGCTAC
GTCGGGTTGTTCATTGCGTGCAAGATTCAACACATGCTACGTGTCGTCAT
GAACTCTCCAGCAAGAACCGTAGTTCATCACGAATGGTAACCGCCTTGAA
CATGTTCGGTAAAAAACACGAGACGACAATTGTCTGCTTCTCACGTACAG
GAACCACCGCATCGCTTACGAGAGTTAAAGGAATAAAATTTGACCATCAC
ACTGTCACTTCACATTACACCCTGCCGTCCAGGCGGGTGAGTTCGCCGTC
GCGAAACACAACAGAATGTCGTTGGTGCAAGGTCGTTCCTTTACAAATAC
CAGTCAGTGACGGCTGTTTAAACATTCAATCAAGCCATGCGGCGAAGACC
GGTATGCCGACGTACCCTCCGTCTGCCCCCACGCCAACTAAAACCACAAC
ATTGTTGCATTTTTTTTTGGTAGGCCACCCACTTCTATCGCGGACAGCTG
GATGAACACTTTACTTGACGGCAGCAGGCTGTCTGCTTCTGCCGAAAAGG
ATGCTTCTGCCGAAAAGGATACGCTCTTGAGCACGGCTCTTGCTGGCAAG
TCAAGGCCACGTGCATGGGTCAGGGGCTGTAGGGACGACAGTCGTCAGAG
GACCACGTCGTTGGGCTGCCAGAGTCCGAGCACTAGAAAGATCTGCCAAC
GCATTCACGACGCTCAGACGGCGCTACGAACTCTTCGTAGAACTACGGAC
TAGTTCTTAAGCGAAGCGCATGCAGTATGTGACCCTTCGGTTGTGTAGGA
AGCAGAGGCGGGTGCCTACTTACCCCTTTGCTTCGAGTAGCCGTTGCCGT
CACAACCCAGAAAATGTTTTCGATGAGATTCAATTCGAAGACTGATTTTC
CTGTCATAGTCTTGAAGGAAGAGGTAACGGAGCAAAGGGCACGGGCGTAG
CCATCCATATCTGTAGACCCACAAGTAGGATTGAGTACCGTACTTTTCTT
TGAGCTGCTTGGGGGGCCGGACACATGGAACGGTCTGGGACATCATGCAC
CCCCCCCTAGCACGCTTCTGTGACAAAAAAGGAACATCCTCGGGGGGGGA
ACCCGCTGGGGGTAAGTCAAACAAGAGAACCTATGTGGCCTACAAACACG
CGCTTGCGCGAACCGTCACTACGTGGTATCTCACGATGACGGGCCTCTCG
AAACATCTTCGAGCGATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7234:5..3922+

>mRNA_Ecto-sp13_S_contig7234.18363.1 ID=mRNA_Ecto-sp13_S_contig7234.18363.1|Name=mRNA_Ecto-sp13_S_contig7234.18363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1116bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7234:5..3922+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTACGGCGACGCGAAAACAGCGTCGCAAGCACGCGCACTGGTTCAA
CAGCGAATGCGGGAGCCAGGAAGACTTTGAGCTCCAAAACGGTGCCGGCC
AAAGACAAGCCCGGTTGGATGAGGCGGGCGAAGACGAGGTGGAATTGGAG
GATTTGGCCAGAGAAGCTGCCGACGTTCTCTTGCATGTGCTTGTCGGGGC
CGAGGTCGATCACGGAATGAGCGAAAGTCAGGAACCAGAAGGGCGAAATG
GAAGGACGAGGTGGACAGCAACCAGGTTTCAGGACGCAGGGGAACATGCT
TGGACCTCAACCCGTCGAAGAGGTTCTGCCCGCAGAAACTCTCAGTCCAA
AGGACCTTTACGCACCTCGAATCTCACAGCATCATCACCACGGTGTGGCA
TAGAGGACGCAGAAGAAGAACTCCAGTCGCGACACCATCGGCGGCGGCCG
GTTGGTCAAGGAACTCCCGATCACGGGGGAACATATCGCGCCAAAGACGG
AAGCGCCAGTATCGGCGGAAATTACGAGCGTGCCAGCGCTACAAACGGGG
CTACGAGCATCAGCGCGGAGAATAGAGGCGGGACTGGTGGGACAAGCGCT
AAGTCGTCTTGTGAGCTGAGCCCGGGGGCCGTACACTATGATCAAAGGAG
CGGAGTTGGTGCAAGAAGACGCGCAAGAAGTGAGAGAGGAGTTGCGGGCG
CGGAGGCAGTCGCAATGCCTAATCACGACGCCGTTCGACGTATGGAAGGC
ATTCGAAGAGGAGGGGGTGAGGACGGGGGAGCGACGCTGCTTCATGGGGT
GAAGTCGACACGACGTGGTCACCTTCAAGGGGGAAGGCCACCCACTTCTA
TCGCGGACAGCTGGATGAACACTTTACTTGACGGCAGCAGGCTGTCTGCT
TCTGCCGAAAAGGATGCTTCTGCCGAAAAGGATACGCTCTTGAGCACGGC
TCTTGCTGGCAAGTCAAGGCCACGTGCATGGGTCAGGGGCTGTAGGGACG
ACAGTCGTCAGAGGACCACGTCGTTGGGCTGCCAGAGTCCGAGCACTAGA
AAGATCTGCCAACGCATTCACGACGCTCAGACGGCGCTACGAACTCTTCG
TAGAACTACGGACTAG
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