mRNA_Ecto-sp13_S_contig7213.18336.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7213.18336.1
Unique NamemRNA_Ecto-sp13_S_contig7213.18336.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7213.18336.1 vs. uniprot
Match: D7G6Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q5_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 1.040e-46
Identity = 101/107 (94.39%), Postives = 103/107 (96.26%), Query Frame = 3 
Query:    3 SAAAMDVLRELERMHAAAWEREQAERTLLARLEDQADGLRNADEAREAHEGAARAAVAEAERLLVKIEGLAKENRGNAEQLAQEQAAATELRRRVDAAEPLVEELRA 323
            SAAAMDVLRELERMHAAAWEREQAERTLLARLEDQADGLR ADEARE HEGAARAAVAEA+RL+VKIEGL KENR NAEQLAQEQAAATELRRRVDAAEPLVEELRA
Sbjct: 1459 SAAAMDVLRELERMHAAAWEREQAERTLLARLEDQADGLRIADEARETHEGAARAAVAEADRLMVKIEGLEKENRANAEQLAQEQAAATELRRRVDAAEPLVEELRA 1565
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BLAST of mRNA_Ecto-sp13_S_contig7213.18336.1 vs. uniprot
Match: A0A6H5JDN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN1_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 4.950e-27
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 3 
Query:    3 SAAAMDVLRELERMHAAAWEREQAERTLLARLEDQADGLRNADEAREAHEGAARAAVAEAERLLVK 200
            SAAAMDVLRELERMHAAAWEREQAERTLLARLEDQADGLRNADEAREAHEGAARAAVAEAERL+VK
Sbjct: 1099 SAAAMDVLRELERMHAAAWEREQAERTLLARLEDQADGLRNADEAREAHEGAARAAVAEAERLVVK 1164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7213.18336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6Q5_ECTSI1.040e-4694.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDN1_9PHAE4.950e-2798.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7213contigEcto-sp13_S_contig7213:2974..4445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size325
Hectar predicted targeting categoryother localisation
Exons3
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463988.190946-CDS-Ecto-sp13_S_contig7213:2973..30961681463988.190946-CDS-Ecto-sp13_S_contig7213:2973..3096Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7213 2974..3096 -
1681463988.200736-CDS-Ecto-sp13_S_contig7213:3754..39071681463988.200736-CDS-Ecto-sp13_S_contig7213:3754..3907Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7213 3755..3907 -
1681463988.209804-CDS-Ecto-sp13_S_contig7213:4398..44311681463988.209804-CDS-Ecto-sp13_S_contig7213:4398..4431Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7213 4399..4431 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463988.218573-UTR-Ecto-sp13_S_contig7213:4431..44451681463988.218573-UTR-Ecto-sp13_S_contig7213:4431..4445Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7213 4432..4445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7213.18336.1prot_Ecto-sp13_S_contig7213.18336.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7213 2974..4431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7213.18336.1

>prot_Ecto-sp13_S_contig7213.18336.1 ID=prot_Ecto-sp13_S_contig7213.18336.1|Name=mRNA_Ecto-sp13_S_contig7213.18336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MDVLRELERMHAAAWEREQAERTLLARLEDQADGLRNADEAREAHEGAAR
AAVAEAERLLVKIEGLAKENRGNAEQLAQEQAAATELRRRVDAAEPLVEE
LRA
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mRNA from alignment at Ecto-sp13_S_contig7213:2974..4445-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7213.18336.1 ID=mRNA_Ecto-sp13_S_contig7213.18336.1|Name=mRNA_Ecto-sp13_S_contig7213.18336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1472bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7213:2974..4445- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTCGGCGGCGGCGATGGACGTGCTGAGGGAGCTGGAGCGCATGCATGTG
GGTGCAGACAGCACCATTCCGGAAAAGGCAGTGTTTCTCGCAGCGAAACA
CGAGCCAAGGCCGACCGACCAACCCACTTGTCAAGTCTCGCCATTGGTGG
CGCGTTGATGTGTTTTGCCCGTTTTCGTTGTGCCGGGCATGGCGGTGTTG
TTTTTTCTCGTGCGTGGGCATGGCGGTGGTTGGTGTTTTTTCTTGTGCTC
AGATGCCTTCGTCGTCCGTTGCCGGCTTGGCGCCTTACTAATCTATTTTT
TGTAGTCAACGGCGTCGAAATATCGAGCTTGACTCGACTCGCGTAGCACC
ATTTGGATAATCTTGATCCTTTCATTTTTTTTTTCGTTTTGTCTCTTGGC
GACTACCGCTCTCTGCCGTCTACGTTGTGACCCCGCTCTCCTGCACGTTG
CCGTTGTCTCACGTTCTTCTCCCCGTGCCTCCCACCCGCAACCCTCCCTC
GTCCTCGCAAACCTGTGTCGCGTTGTTATTCAAACTAGGCGGCCGCGTGG
GAGCGGGAGCAGGCCGAGCGGACTCTGCTGGCAAGGCTGGAGGATCAGGC
TGACGGGCTGAGAAACGCAGACGAGGCCAGGGAAGCCCACGAGGGGGCGG
CGCGCGCGGCGGTGGCGGAGGCGGAGCGTCTGCTGGTCAAGGTGTGTGTG
TGTGTGTGTGTGGTTTTGCTATCTATGAGATGTTGTTGTTGCTGTTGCTG
TTGTTGTTGTTGTTGTTGCCATGGTCGTTTGGTTTGGCGTGAGGGAAGAT
GCTTCGGTGCTGTACCTAGTGTGGAGGTTTTCTCACTTGTGAGGGAGGGA
AAGACAAACAGGCACAAAGGCAGATGGGATTCCTTGATCATCCAAGGCGG
TACCTACACTTTTCAGTGTTTTTCGTAATACTACAACCATCCAAGTCACA
CAGGAGGGGGGTAGACACCGGGCCTTTGTTTTTCTCCTTTTTATGTTGTT
CTCGTGCCCCCACCTTCCTCCTGCGGTGCGTGTTTAATTTCGTTTATTTT
ATCGCGAGAAGGGTCCAGCCGTCCCTTTCCCTCGTCGCCGGTCCTTACGT
CGAAGTTTGGTATAATCACGAGAGCTTTCAGCTCTTTTTCGCTTTCGCCT
GCAGAAAAAGCGATTTTCACCGCATGGGGATTCGACTCACGACTTCGCCA
CTAACGGTTTCGAGGTTACCACTAGACCACCGTGGTGGCCGGCCTCGAGC
CTGCGTTGTTCCTGCTCCGCAATTCTAAACGCGTTGCCATACATCGTGGT
GCGTTTCTGCCTGTCGCCCCCTCCCACAAACACTCCTCACCTGTCGCAGA
TCGAAGGCCTAGCGAAAGAGAACAGGGGGAACGCCGAACAGCTCGCCCAA
GAGCAGGCCGCGGCGACGGAGCTGAGAAGACGCGTAGACGCCGCAGAACC
GCTCGTCGAGGAGCTCAGGGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7213:2974..4445-

>mRNA_Ecto-sp13_S_contig7213.18336.1 ID=mRNA_Ecto-sp13_S_contig7213.18336.1|Name=mRNA_Ecto-sp13_S_contig7213.18336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7213:2974..4445- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGTGCTGAGGGAGCTGGAGCGCATGCATGCGGCCGCGTGGGAGCG
GGAGCAGGCCGAGCGGACTCTGCTGGCAAGGCTGGAGGATCAGGCTGACG
GGCTGAGAAACGCAGACGAGGCCAGGGAAGCCCACGAGGGGGCGGCGCGC
GCGGCGGTGGCGGAGGCGGAGCGTCTGCTGGTCAAGATCGAAGGCCTAGC
GAAAGAGAACAGGGGGAACGCCGAACAGCTCGCCCAAGAGCAGGCCGCGG
CGACGGAGCTGAGAAGACGCGTAGACGCCGCAGAACCGCTCGTCGAGGAG
CTCAGGGCT
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