mRNA_Ecto-sp13_S_contig7208.18331.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7208.18331.1
Unique NamemRNA_Ecto-sp13_S_contig7208.18331.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7208.18331.1 vs. uniprot
Match: D8LF18_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF18_ECTSI)

HSP 1 Score: 578 bits (1491), Expect = 1.780e-200
Identity = 301/311 (96.78%), Postives = 308/311 (99.04%), Query Frame = 1
Query:   70 MPQHEDSIARKPLQRFKRLTGSLETLISSIAQDWEDLATAPAADAVGLLDDDGPTVHGKMRKAQLLFTELHSTTRKMHSAIETIRNKVASVKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEEEEEQGFLEDVDTLQTAEEHAGNLAILKGQKEQRINAQLALKATQIRVKAANSTVKESRDYLDRLPENLKDVERALAPLKKNMPWRPGSRRGRHERSSELPGPLFTLYCQLEAYCDSVLAATGGMDESGAFSPLATFGGDGGDVGGDRHPPGLAASVTIEPAKACVSASAKAAAAGPKDA 1002
            MP+HEDSIARKPLQRFKRLTGSLETLISS+AQDWEDLATAPAADAVGLL DDGP+VHGKMRKAQLLFTELHSTTRK+HSAIETIRNKVA+ KQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEE+EEQGFLEDVDTLQTAEEHAGNLAILK QKEQRINAQLALKATQIRVKAA+STVKESRDYLDRLPENLKDVERALAPLKKNMPWRPGSRRGRHERSSELPGPLFTLYCQLEAYCDSVLAATGGMDESGAFSPLATFGGDGGDVGGDRHPPGLAASVTIEPAKACVSASAKAAAAGPKDA
Sbjct:    1 MPEHEDSIARKPLQRFKRLTGSLETLISSMAQDWEDLATAPAADAVGLLHDDGPSVHGKMRKAQLLFTELHSTTRKIHSAIETIRNKVATAKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEEDEEQGFLEDVDTLQTAEEHAGNLAILKDQKEQRINAQLALKATQIRVKAASSTVKESRDYLDRLPENLKDVERALAPLKKNMPWRPGSRRGRHERSSELPGPLFTLYCQLEAYCDSVLAATGGMDESGAFSPLATFGGDGGDVGGDRHPPGLAASVTIEPAKACVSASAKAAAAGPKDA 311          
BLAST of mRNA_Ecto-sp13_S_contig7208.18331.1 vs. uniprot
Match: A0A835YW19_9STRA (Fms-interacting protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW19_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.610e-17
Identity = 67/184 (36.41%), Postives = 92/184 (50.00%), Query Frame = 1
Query:  331 VASVKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEEEEEQGFLEDVDTLQTAEEHAGNLA-----------------------ILKGQKEQRINAQLALKATQIRVKAANSTVKESRDYLDRLPENLKDVERALAPLKKNMPWRPGSRRGRHERSSELPGPLFTLYCQLEAYCDS 813
            V   ++ +D  HLQL+NLLYERD+L RE QLCRD    +L+KM  +E    L  +D   +A+ HA +                         ILKG+   R      L+  Q R +A  ++V E + +L  LP  L  +E A  PL+  M      RR    R+++LP PLFTL+CQLEAY  S
Sbjct:   55 VVERRRELDGVHLQLQNLLYERDHLLREIQLCRDHPTPQLDKMARDEGAPILPSMDDAVSADAHANHQEHPSAARSPHAHMHXXXXXAAHSQILKGELTARDKMTRQLRELQERARAQAASVAEQQRWLAGLPRALAALEDASKPLQAYMRSGKSERRALQHRAADLPKPLFTLFCQLEAYAFS 238          
BLAST of mRNA_Ecto-sp13_S_contig7208.18331.1 vs. uniprot
Match: A0A0P1B7G5_PLAHL (Conserved coiled/coiled coil protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B7G5_PLAHL)

HSP 1 Score: 83.2 bits (204), Expect = 9.820e-14
Identity = 55/163 (33.74%), Postives = 88/163 (53.99%), Query Frame = 1
Query:  322 RNKVASVKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEEEEEQGFLEDVDTLQT-AEEHAGNLAILKGQKEQRINAQLALKATQIRVKAANSTVKESRDYLDRLPENLKDVERALAPLKKNMPWRPGSRRGRHE-RSSELPGPLFTLYCQLEAY 804
            R +V   K   + + LQL+NLLYE+D+L RE Q CR F+  EL+K++      F++    +Q  A+ H  +L  L  +   R   Q  LK  + ++   N+ ++  + +LD LP +L  +E A   L++ M      +R   +   +ELP PL+ LYC+LEAY
Sbjct:   66 RTRVQEQKNLAETHQLQLQNLLYEKDHLLREIQSCRGFSTKELDKID------FVDGPIPIQVDADVHRQHLNQLTQELNARKRLQAELKEIKAKIAVINNVIETKQTFLDELPHHLAGIEAATMGLQEYMGQNITVQRNEQQVAGTELPTPLYALYCELEAY 222          
BLAST of mRNA_Ecto-sp13_S_contig7208.18331.1 vs. uniprot
Match: W2QE63_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2QE63_PHYPN)

HSP 1 Score: 83.2 bits (204), Expect = 9.920e-14
Identity = 57/183 (31.15%), Postives = 97/183 (53.01%), Query Frame = 1
Query:  262 LLFTELHSTTRKMHSAIETIRNKVASVKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEEEEEQGFLEDVDTLQTAEE-HAGNLAILKGQKEQRINAQLALKATQIRVKAANSTVKESRDYLDRLPENLKDVERALAPLKKNMPWRPGSRRGRHERS-SELPGPLFTLYCQLEAY 804
            LL + + S  R      ++ R +V   K   + + LQL+NLLYE+D+L RE + CR F+  E++K+E      F +    ++   + H  +L  L  +   R   Q  LK  ++++       +  + +L+ LP++L  +E A   L+K M     ++R RH+ + +ELP PL+ LYC+LEAY
Sbjct:   48 LLLSAMKSGLRDTFLEADSRRTRVQEQKDVAEAHQLQLQNLLYEKDHLLREIRRCRGFSTKEMDKIE------FADGPLPIKVDPDVHRQHLDQLTQELHARKRLQTELKELKLKIAKVEDATETKQAFLNALPDHLAGIEAATTGLQKYMGEPVTAQRNRHQAAGTELPTPLYALYCELEAY 224          
BLAST of mRNA_Ecto-sp13_S_contig7208.18331.1 vs. uniprot
Match: A0A5D6XH11_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XH11_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 8.130e-12
Identity = 63/241 (26.14%), Postives = 116/241 (48.13%), Query Frame = 1
Query:   85 DSIARKPLQRFKRLTGSLETLISSIA-QDWEDLATAPAADAVGLLDDDGPTVHGKMRKAQLLFTELHSTTRKMHSAIETIRNKVASVKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEEEEEQGFLEDVDTLQTAEEHAGNLAILKGQKEQRINAQLALKATQIRVKAANSTVKESRDYLDRLPENLKDVERALAPLKKNMPWRPGSRRGRHERSSELPGPLFTLYCQLEAY 804
            +S A  PL + KR    +  L++++  Q      T    D   L          +  +  +L   + +  R   +A +  +++VA  K  ++ + L+L+NLLYE+D+L RE + CR F+  E++K+E E  +     +  +  AE H  +L  L  + E R      LK  + R++  ++  +  + +LD L   +  +E A   L+  M     ++  R   +++L  PL+TL+C+LEAY
Sbjct:    8 ESAAAPPLAQLKRACAEIRELLATLVDQRVRAKETGRTLDKAAL--------RAQRWRLLVLLRGVKAGLRATFTAADDWKSRVARQKDVVEAHQLKLQNLLYEKDHLLREIRRCRGFSTKEMDKIEFEGGK-----LPIVGDAETHRQHLDQLTKELETRKRMITQLKDLKERIEKIDAATQAKQAFLDGLRHEVAAIENATTGLQLYMGAPVTAQLNRQHEANQLAAPLYTLFCELEAY 235          
BLAST of mRNA_Ecto-sp13_S_contig7208.18331.1 vs. uniprot
Match: A0A8K1FD71_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FD71_PYTOL)

HSP 1 Score: 76.3 bits (186), Expect = 1.870e-11
Identity = 62/211 (29.38%), Postives = 107/211 (50.71%), Query Frame = 1
Query:  208 GLLDDDGPTVH-GKMRKAQL---------LFTELHSTTRKMHSAIETIRNKVASVKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEEEEEQGFLEDVDTLQTAEEHAGNLAILKGQKEQRINAQLALKATQIRVKAANSTVKESRDYLDRLPENLKDVERALAPLKKNMPWRP--GSRRGRHERSSELPGPLFTLYCQLEAY 804
            G+L D     H G + KA+L         L   + +  R+   A +  + +V   K  ++ + L+L+NLLYE+D+L+RE + CR F   E++K+E E  +     +     AE H  +L  L  + E R   +  LK  + ++    +  ++ + +LD L   L  +E +   L+K M  +P   + + + + S+ LP PL+TLYC+LEAY
Sbjct:   24 GILADVDKQKHAGAVDKARLKQQRWQAVTLICAMKAGLRETFLASDAWKTRVQEQKDVVEAHQLKLQNLLYEKDHLAREIRRCRGFGTKEMDKIEFENGR-----LPIAVDAESHRQHLDQLTRELETRKRMKTQLKELKAKIDEVEAASQKKQTFLDGLRGELDTIEDSTRGLQKYM-HKPVTATLKSQQDASTLLPAPLYTLYCELEAY 228          
BLAST of mRNA_Ecto-sp13_S_contig7208.18331.1 vs. uniprot
Match: A0A024TU27_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TU27_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 5.470e-11
Identity = 58/221 (26.24%), Postives = 110/221 (49.77%), Query Frame = 1
Query:  214 LDDDGPTVHGKMRKAQLLFTELHSTTRKMHSAIETIRNKVASVKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEEEEEQGFLEDVDTLQTAEEHAGNLAILKGQKEQRINAQLALKATQIRVKAANSTVKESRDYLDRLPENLKDVERALAPLKKNMPWRPGSRRGRHERSSELPGPLFTLYCQLEAYCDSVLAATG----GMDESGAFSPL 864
            +DD+  +    + +A  L  ++  +TR+     E  R +VA  K  ++ +HL+L+NLLYE+D+L RE + C+ +   EL++++ ++  G L  +    + ++H   L      ++ ++  Q  LKA   ++ A +  V+     LD +P +         PL+  +         RH  +  LP PL++L+C+L+A+  S+   TG    G  + G+ S L
Sbjct:   29 MDDNATSTSNDVVRALCLLKDIKQSTRETFLDAEGYRRRVAEQKDLVEAHHLKLQNLLYEKDHLLREIRRCKGYPTKELDQIQFKD--GPLPVLVDADSHDKHLKRLDDELADRKAQLQHQQDLKA---QIAAVDEAVQAKHALLDTVPAHXXXXXXXXXPLQALLSIPISESTQRHRDAKVLPAPLYSLFCELDAFL-SIHPGTGTVAIGEAKVGSLSKL 243          
BLAST of mRNA_Ecto-sp13_S_contig7208.18331.1 vs. uniprot
Match: A0A6U2L6P8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2L6P8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.490e-10
Identity = 64/227 (28.19%), Postives = 109/227 (48.02%), Query Frame = 1
Query:  196 ADAVGLLDD---DGPTVHGKMRKAQLLFTELHSTTRKMHSAIETIRNKVASVKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEEEEEQG---FLEDVDTLQTAEEHAGNLAIL-KGQKEQRINAQLALKATQI-----RVKAANSTVKESRDYLDRLPENLKDVERALAPLKKNMP---WRPGS-RRGRHERSSELPGPLFTLYCQLEAYCDSVLAAT 828
            A  + L+DD   D   +  ++  +      + S+ R     +    N++   K  ++ + L  +NL YE+ +L RE +LCR+    EL ++   E Q    +LE +  +    +H  +  IL K   E  +  +L  +   I     R+K   S+    R +L  +   L  +ERA  PL+K+      + G+ RR R+ ++++LPGPL+TL CQLEAY D +   T
Sbjct:   17 ASLLSLVDDVVSDPMELESRLMSSYEALVTMKSSQRSAFLLLADKSNELKEHKSKLEASQLISQNLDYEKAHLKREIKLCREHDQNELEQLCRSEGQSVSSYLEKIGPVDAPMDHKSHQKILDKLSNEIEVRQRLEQELRSIIDESSRIKNETSS---KRAFLRNMSGQLSAIERATIPLQKHFSAENLKTGTARRERYTKANKLPGPLYTLCCQLEAYADMLNQTT 240          
BLAST of mRNA_Ecto-sp13_S_contig7208.18331.1 vs. uniprot
Match: W7UBK5_9STRA (Tho complex subunit 5 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7UBK5_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.500e-9
Identity = 66/221 (29.86%), Postives = 101/221 (45.70%), Query Frame = 1
Query:  208 GLLDDDGPTVHGK------MRKAQLLFTELHSTTRKMHSAIETIRNKVASVKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEEEEEQGFLEDVDT-----LQTAEEHAGNLAILKGQKEQRINAQLALKATQIRVKAANSTVKESRDYLDR-LPENLKDVERALAPLKKNMP----------WRPGSRRGRHERSSELPGPLFTLYCQLEAY 804
            G L D    V GK      + +A +   E  S  R+   A+   R ++ S K+ +D  HLQL+NL+YE+D+L R  Q  RDF M EL K+EE+E    L  +       L   EEH  +L  L+ +K  RI       A Q +  A +  V E R  L   LP  +++++     + + +P          + P       E+   LP P++ L  +L+AY
Sbjct:   66 GTLGDQNSPVPGKDEMQELITEAAVTLIEYKSMARESAMAVGGCRTEMQSKKKEVDDRHLQLQNLMYEKDHLQRTIQSLRDFPMAELTKIEEDEGAPLLPGLTEGGQVRLLPVEEHRLSLERLQEEKGARIQLHEEHVAAQTKRAALSREVDELRAMLGTSLPRQIEELDALCTGIHERIPGLSIAAPFGGFPP-------EQVQALPRPMYVLLGRLQAY 279          
BLAST of mRNA_Ecto-sp13_S_contig7208.18331.1 vs. uniprot
Match: A0A2D4BTQ1_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BTQ1_PYTIN)

HSP 1 Score: 67.0 bits (162), Expect = 1.940e-8
Identity = 51/163 (31.29%), Postives = 88/163 (53.99%), Query Frame = 1
Query:  322 RNKVASVKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTELNKMEEEEEQGFLEDVDTLQTAEEHAGNLAILKGQKEQRINAQLALKATQIRVKAANSTVKESRDYLDRLPENLKDVERALAPLKKNMPWRPGSRRGRHER--SSELPGPLFTLYCQLEAY 804
            + +V   K  ++ + L+L+NLLYE+D+L RE + CR F   E++K+E E   G    +D   + + H  +L  L  + E R      +K  + +++   +T +  + +LD L   L  ++ +   L++ M  RP S   + +R  S +LP PL+TL+C LEAY
Sbjct:   59 KTRVQEQKDAVEAHQLRLQNLLYEKDHLLREIRRCRGFHTKEMDKIEFE---GGAIPIDV--SPDVHRQHLDQLTKELETRKRMMADVKELRAKIEVVEATTQRKQAFLDGLRGELDRIDASTRGLQQYM-RRPVSATLKLQRDASLQLPTPLYTLFCXLEAY 215          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7208.18331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LF18_ECTSI1.780e-20096.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YW19_9STRA2.610e-1736.41Fms-interacting protein-domain-containing protein ... [more]
A0A0P1B7G5_PLAHL9.820e-1433.74Conserved coiled/coiled coil protein n=1 Tax=Plasm... [more]
W2QE63_PHYPN9.920e-1431.15Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
A0A5D6XH11_9STRA8.130e-1226.14Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1FD71_PYTOL1.870e-1129.38Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024TU27_9STRA5.470e-1126.24Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
A0A6U2L6P8_9STRA5.490e-1028.19Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
W7UBK5_9STRA1.500e-929.86Tho complex subunit 5 n=3 Tax=Monodopsidaceae TaxI... [more]
A0A2D4BTQ1_PYTIN1.940e-831.29Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7208contigEcto-sp13_S_contig7208:4348..7589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score583.9
Seed ortholog evalue4.9e-164
Seed eggNOG ortholog2880.D8LF18
Preferred nameTHOC5
Model size1067
KEGG koko:K05291,ko:K13174
KEGG Pathwayko00563,ko01100,ko03013,map00563,map01100,map03013
KEGG ModuleM00405,M00406
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000346,GO:0000347,GO:0000445,GO:0000902,GO:0001701,GO:0001824,GO:0002376,GO:0002520,GO:0002521,GO:0002573,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006996,GO:0007049,GO:0007140,GO:0007275,GO:0007276,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010793,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0017145,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030097,GO:0030099,GO:0030154,GO:0030224,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031503,GO:0031974,GO:0031981,GO:0031990,GO:0032239,GO:0032386,GO:0032501,GO:0032502,GO:0032504,GO:0032784,GO:0032786,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033036,GO:0033157,GO:0033554,GO:0034605,GO:0034613,GO:0034641,GO:0035162,GO:0042886,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044403,GO:0044417,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044766,GO:0045184,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045649,GO:0045650,GO:0045787,GO:0045893,GO:0045935,GO:0046483,GO:0046784,GO:0046822,GO:0046825,GO:0046831,GO:0046907,GO:0048232,GO:0048285,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048568,GO:0048583,GO:0048585,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051028,GO:0051049,GO:0051093,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051301,GO:0051302,GO:0051321,GO:0051641,GO:0051649,GO:0051701,GO:0051704,GO:0051716,GO:0051726,GO:0051836,GO:0060215,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090304,GO:0097159,GO:0140013,GO:1901360,GO:1901363,GO:1901976,GO:1901977,GO:1902105,GO:1902106,GO:1902579,GO:1902680,GO:1903046,GO:1903131,GO:1903506,GO:1903508,GO:1903706,GO:1903707,GO:1903827,GO:2000001,GO:2000002,GO:2000026,GO:2000035,GO:2000112,GO:2000197,GO:2001020,GO:2001021,GO:2001141
Exons6
EggNOG free text desc.positive regulation of DNA-templated transcription, elongation
EggNOG OGsKOG2216@1,KOG2216@2759
Ec32 ortholog descriptionTHO complex, subunit 5
Ec32 orthologEc-21_006380.1
Cds size1065
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7208.18331.1prot_Ecto-sp13_S_contig7208.18331.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7208 4348..7587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463987.3915854-CDS-Ecto-sp13_S_contig7208:4347..46701681463987.3915854-CDS-Ecto-sp13_S_contig7208:4347..4670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7208 4348..4670 +
1681463987.404481-CDS-Ecto-sp13_S_contig7208:5180..52941681463987.404481-CDS-Ecto-sp13_S_contig7208:5180..5294Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7208 5181..5294 +
1681463987.4153304-CDS-Ecto-sp13_S_contig7208:5774..59061681463987.4153304-CDS-Ecto-sp13_S_contig7208:5774..5906Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7208 5775..5906 +
1681463987.4286797-CDS-Ecto-sp13_S_contig7208:6434..65691681463987.4286797-CDS-Ecto-sp13_S_contig7208:6434..6569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7208 6435..6569 +
1681463987.441576-CDS-Ecto-sp13_S_contig7208:6819..69381681463987.441576-CDS-Ecto-sp13_S_contig7208:6819..6938Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7208 6820..6938 +
1681463987.4531028-CDS-Ecto-sp13_S_contig7208:7345..75871681463987.4531028-CDS-Ecto-sp13_S_contig7208:7345..7587Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7208 7346..7587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7208.18331.1

>prot_Ecto-sp13_S_contig7208.18331.1 ID=prot_Ecto-sp13_S_contig7208.18331.1|Name=mRNA_Ecto-sp13_S_contig7208.18331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=355bp
PHHCGSAQPKLICDISRVVSTPKMPQHEDSIARKPLQRFKRLTGSLETLI
SSIAQDWEDLATAPAADAVGLLDDDGPTVHGKMRKAQLLFTELHSTTRKM
HSAIETIRNKVASVKQTMDVNHLQLENLLYERDYLSRETQLCRDFTMTEL
NKMEEEEEQGFLEDVDTLQTAEEHAGNLAILKGQKEQRINAQLALKATQI
RVKAANSTVKESRDYLDRLPENLKDVERALAPLKKNMPWRPGSRRGRHER
SSELPGPLFTLYCQLEAYCDSVLAATGGMDESGAFSPLATFGGDGGDVGG
DRHPPGLAASVTIEPAKACVSASAKAAAAGPKDASDSAEAPAASTDSTSG
SSEPD
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mRNA from alignment at Ecto-sp13_S_contig7208:4348..7589+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7208.18331.1 ID=mRNA_Ecto-sp13_S_contig7208.18331.1|Name=mRNA_Ecto-sp13_S_contig7208.18331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3242bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7208:4348..7589+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCATCACTGTGGCAGTGCACAGCCAAAGCTGATTTGCGATATATCGCG GGTGGTATCTACACCGAAGATGCCTCAGCATGAGGATTCGATCGCCAGGA AGCCTTTGCAGAGATTCAAGCGGCTAACTGGGTCTCTGGAGACACTGATA TCGTCCATCGCACAAGACTGGGAAGACTTGGCGACCGCTCCAGCAGCGGA CGCTGTGGGGCTTCTCGACGACGATGGCCCTACAGTGCACGGCAAGATGA GGAAGGCGCAGCTGCTCTTCACCGAGCTTCACTCCACTACCAGAAAAATG CACAGCGCTATCGAAACCATCAGGTAAATCTGAACAATACCAGGTCTCGG CTTTGCTGTTGCAATATCCTGAGAGAGGACCTGTTGCACCGCACGCTGCC CAACAGTAGTGGACGGTAACATAGAGGAACTACGGAAAAATAATTACACG CACAGAAAGACCACCATTTGGACGAAGTGGTGCACTGGCTGTCGATCTTG GGTTGAGAGCGCCCATGCATGCAGTACGTAGTACCCACGTGTGTGGCATC TTAGTTTAATACCCCGGGCGGTGCTGAGCTGTACGTTGTGCCATAACGGA GCCTGCCGCTGGGTAACTGCAGCTGCCCCCTCCTTACCTCTGGGTACTGT ATTGAAGTGGTTTTCATGTACTGCTGTGGACGCCGGCAGTTTTTCCACAA AGGTGGGGCTCGCGGACGCAGGTTACCCACACAAGCCGTGTGAGCTGTTG TTTGGCAAACGCGAAACTTGCCCTCGTTTGCGACGATTTCGATGCCGGTG TGCTACTGCTGCTGTGGCGCACTTGCCTTGCAGGAACAAGGTGGCCTCCG TCAAGCAGACCATGGACGTGAACCACCTGCAGCTGGAGAACTTGCTGTAC GAGAGGGACTACCTCTCTCGGGAGACGCAGCTCTGCAGAGACTTCACGTG AGACGCTCGGTCCTGCCCGAAAGTTTGCAGCTCGTGTGCATACTGCCGTT CTACCTGCATGGTGTCATCATATTGTGGTGTACCACGCCATGTTGAGTGC TTCTACACGCCTATTAGACCGGCCGTTGCAATGTACATGATCACGTAACA TGACGGGGCAAGATTTCCGGCCATCACAGGCAGCTCTTGGGCAAGGAGGT ATTGCTTGAACCCCGTGACTTGCGAAGGCCCTTTTGGGTTAGTTGGCATC TGCGTTTACCCCAGGGCTTGCTTGCTTTTCAACGCCTTATCGCTTCCTGC CATTGTTCCATTGTTCGCCGTCAAGAACATGACGAGTGCAGCCAAGAGAG GGCAGCGGCAAAGGCATGCATCATCCTTCGTGTTTTGATTAGTCTAGCTG CTTGGCCTCAGATTCGCGATGCTTGATTATCGCCTGGTGTGAAGTCTTGC CATTCGTACCTGCATTGTCGATTGCAGTATGACAGAGCTGAACAAGATGG AGGAAGAAGAGGAGCAAGGCTTCTTGGAAGATGTGGACACCCTTCAGACA GCAGAGGAGCACGCAGGGAACCTCGCCATACTCAAGGGTCAAAAGGAACA AAGGATAAAGTGGGTCGATGCTCTTTCTTTTCTCTTCCCGGTGTTAATGC CGATTGATGTGGACCGACCCCAACCACCATTACAGATCGTAAGCTTGTTG TCACCGCATACATAGGACGAAACGATGCCGCCCTCAACCCAACTCAAGTG TAGTCATGATAATCCCTGATTCCTTGCTTCTGTCCTTGGCATTGGTCCCC TCTCGTGGCTGATCTGATAAGGTGTTGAAATTGACGTTAATGCCGTAGCA GGAAGCCCTCTAGAAACGCAACAGCGTTTTGAGTTTCTATCGGTGAAGCG GGAATGGTACATGCGTCGCGGGTGATTCGAGGCTGAGTTCTGCGCTGAGG ACCTCGTGCACAGCAGTGCTACGGCTGCCCCACTGCTCCACAACATTCGC GTGTACCTGCGGTCTGGTGTAGTGGTGCCTGCACGTGTGTCTGATGGCGC TTTTTTTGTTTCCAGCAAGCTCTTGCTTTCCGCATGTCAGGTCTTTGTCG ACAAACATATGTGTCTGTTCTGTGTAATCGTTTGCAGCGCCCAGCTGGCC CTAAAGGCGACCCAGATCAGGGTGAAGGCCGCCAACTCGACCGTGAAGGA GAGCAGGGACTACCTCGACAGGCTGCCCGAGAATCTGAAGGACGTGGAGA GGGCTCTCGCTCCCCTCAAGAAGTAAGTAGATGTGGGGGGCATCGGATTG TTTGCATGGGTGGCTCGTGTCTTGGCCGTATAATGGCGTCCAGACAGCCC TCGTGCTCTCAAGAAGCCTGCGAGCCTCCTACTCGTACAGACGATTCGTA CCATCGTGTCATCATCATGGATGCTGCCGTTATATTAGGCTGGAGCCAAG TACCCGCGTGTACCCGTTTGTTCCACCCTCTGCGTCTCCCCCCCCCGCTA ACGCACGCACGTCTACGGGCAGAAACATGCCCTGGCGTCCTGGAAGCCGG CGGGGTCGACATGAGCGCTCATCTGAGCTCCCAGGACCTCTATTTACCTT GTACTGCCAACTAGAGGCATACTGCGACTCCGTGCTAGCTGGTGAGCCTG ACTGGACTCGTCTCTAAACCCTGTAGTCCCCATGACGTAGCCTGGAAATC GATGCCCGCGGTTGAACCGGCGTCGAATGTAGCTATTTGTATGGTGGTAA GAGGCACGATCGATCTGGGACGTGTGTAGACAATGCGGCCAATCCCTCAA ATGCAAAAAGCTTGTGGGTCTGCAACCTTCCTGTAGGTCTGCGACCTTGT TGTAGTGTAGTCCTACAAATTCAAGCTTATTGTTACTTCTATTTTCCTAA TGGGTGTACAAAAGTGAGAATATGGCGCTCTCGAGTGGATGTCTCGTGGG TGGAAATTGAAAACTTGTCCCTCGTGTCCCGCTCGTGTCGTGTCTCAACG TTTTGTGTGAACGTGTGTGCATGCGAACGTACGTGTCGGGGCGGGCAGCG ACGGGCGGCATGGACGAAAGCGGGGCCTTCTCGCCATTGGCAACCTTCGG GGGAGACGGAGGAGACGTGGGAGGCGACCGACACCCCCCTGGCCTGGCGG CGAGCGTGACTATTGAGCCGGCCAAGGCCTGCGTGAGCGCGTCTGCGAAG GCAGCGGCCGCGGGACCGAAGGATGCCTCAGACTCCGCCGAGGCCCCCGC GGCTAGCACCGACTCGACCAGTGGCTCTTCTGAACCCGACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7208:4348..7589+

>mRNA_Ecto-sp13_S_contig7208.18331.1 ID=mRNA_Ecto-sp13_S_contig7208.18331.1|Name=mRNA_Ecto-sp13_S_contig7208.18331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1065bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7208:4348..7589+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCATCACTGTGGCAGTGCACAGCCAAAGCTGATTTGCGATATATCGCG
GGTGGTATCTACACCGAAGATGCCTCAGCATGAGGATTCGATCGCCAGGA
AGCCTTTGCAGAGATTCAAGCGGCTAACTGGGTCTCTGGAGACACTGATA
TCGTCCATCGCACAAGACTGGGAAGACTTGGCGACCGCTCCAGCAGCGGA
CGCTGTGGGGCTTCTCGACGACGATGGCCCTACAGTGCACGGCAAGATGA
GGAAGGCGCAGCTGCTCTTCACCGAGCTTCACTCCACTACCAGAAAAATG
CACAGCGCTATCGAAACCATCAGGAACAAGGTGGCCTCCGTCAAGCAGAC
CATGGACGTGAACCACCTGCAGCTGGAGAACTTGCTGTACGAGAGGGACT
ACCTCTCTCGGGAGACGCAGCTCTGCAGAGACTTCACTATGACAGAGCTG
AACAAGATGGAGGAAGAAGAGGAGCAAGGCTTCTTGGAAGATGTGGACAC
CCTTCAGACAGCAGAGGAGCACGCAGGGAACCTCGCCATACTCAAGGGTC
AAAAGGAACAAAGGATAAACGCCCAGCTGGCCCTAAAGGCGACCCAGATC
AGGGTGAAGGCCGCCAACTCGACCGTGAAGGAGAGCAGGGACTACCTCGA
CAGGCTGCCCGAGAATCTGAAGGACGTGGAGAGGGCTCTCGCTCCCCTCA
AGAAAAACATGCCCTGGCGTCCTGGAAGCCGGCGGGGTCGACATGAGCGC
TCATCTGAGCTCCCAGGACCTCTATTTACCTTGTACTGCCAACTAGAGGC
ATACTGCGACTCCGTGCTAGCTGCGACGGGCGGCATGGACGAAAGCGGGG
CCTTCTCGCCATTGGCAACCTTCGGGGGAGACGGAGGAGACGTGGGAGGC
GACCGACACCCCCCTGGCCTGGCGGCGAGCGTGACTATTGAGCCGGCCAA
GGCCTGCGTGAGCGCGTCTGCGAAGGCAGCGGCCGCGGGACCGAAGGATG
CCTCAGACTCCGCCGAGGCCCCCGCGGCTAGCACCGACTCGACCAGTGGC
TCTTCTGAACCCGAC
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