mRNA_Ecto-sp13_S_contig7200.18320.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7200.18320.1
Unique NamemRNA_Ecto-sp13_S_contig7200.18320.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: D7G1S4_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S4_ECTSI)

HSP 1 Score: 469 bits (1208), Expect = 1.620e-160
Identity = 234/241 (97.10%), Postives = 240/241 (99.59%), Query Frame = 2
Query:    2 KLNAWEVKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
            +LNAWEVKQLRNELQVSVEAG QRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAF+WPSLVHLMDQREIVRG+EGPIVVILAPTRELAGQIY+EANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLK+TNMRRCTMM+LDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV
Sbjct:  152 RLNAWEVKQLRNELQVSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGQEGPIVVILAPTRELAGQIYSEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKSTNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 392          
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: A0A6H5KLM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLM8_9PHAE)

HSP 1 Score: 449 bits (1154), Expect = 2.490e-155
Identity = 225/228 (98.68%), Postives = 227/228 (99.56%), Query Frame = 2
Query:    2 KLNAWEVKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQ 685
            KLNAWEVKQLRNELQVSVEAG QRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAF+WPSLVHLMDQREIV+GKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQ
Sbjct:  234 KLNAWEVKQLRNELQVSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVKGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQ 461          
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: A0A7S3UTY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTY6_HETAK)

HSP 1 Score: 306 bits (784), Expect = 4.190e-100
Identity = 157/235 (66.81%), Postives = 181/235 (77.02%), Query Frame = 2
Query:   20 VKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
            V+ LR+ L+  VE         +P P+ SF+HAG D  L   + R G E PTPIQAQALPV + GRD+IG+A+TGSGKT AF WP L H +DQR I +G EGPI VIL+PTRELA QIY E  KFAK  G KVCA+ GGAGK+EMQK LK GPE+VVATPGR+IEMIK KATNMRRCT+ VLDEADRMF+MGFEYQMRSIV Q RPDRQTLMFSATFK+++Q LA DIL DPV +
Sbjct:    4 VRALRSRLECQVEGAGP-----LPRPLPSFRHAGLDPKLAQTIARLGLENPTPIQAQALPVALGGRDLIGIAKTGSGKTYAFAWPVLTHALDQRYIEKG-EGPIAVILSPTRELASQIYAEVKKFAKPLGAKVCALIGGAGKYEMQKELKTGPEVVVATPGRLIEMIKCKATNMRRCTICVLDEADRMFEMGFEYQMRSIVDQIRPDRQTLMFSATFKKKIQILARDILRDPVKI 232          
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: A0A835ZDT0_9STRA (Putative DEAD/DEAH box RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT0_9STRA)

HSP 1 Score: 291 bits (744), Expect = 2.100e-94
Identity = 143/190 (75.26%), Postives = 166/190 (87.37%), Query Frame = 2
Query:  155 QGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
            +G EAPTPIQAQALPV +SGRD+IGVA+TGSGKT AF+WP LVH+M QREI  G EGPI VIL+PTRELA QI+ +A KFAK+ G  VCAV+GGAGKWEMQKAL+EGPEIVVATPGR+IEMIK+KATN+ RCT +VLDEADRMFD+GF YQMRSIV Q RP RQT++FSATFKR+V+QLA D+L DPV +
Sbjct:   33 EGLEAPTPIQAQALPVALSGRDLIGVAKTGSGKTFAFVWPVLVHVMAQREIEDG-EGPIAVILSPTRELATQIHGQAKKFAKQLGANVCAVFGGAGKWEMQKALREGPEIVVATPGRLIEMIKIKATNLARCTCVVLDEADRMFDLGFGYQMRSIVDQVRPSRQTMLFSATFKRKVEQLARDVLTDPVRI 221          
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: A0A4D9D4S8_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4S8_9STRA)

HSP 1 Score: 293 bits (750), Expect = 6.940e-91
Identity = 148/240 (61.67%), Postives = 188/240 (78.33%), Query Frame = 2
Query:   14 WE--VKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHA-GFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
            WE  ++    ELQV VE            P+ SFKHA GF + LL E++++GF+APTPIQAQALP+ ++GRD++G+AQTGSGKTLAF+WP+LVHLMDQ E+V+G EGPIV+ILAPTRELA QIY EA KFAK +G +V AV+GGAGKWE  K LK G EI++ATPGR++E +K KAT + RCT +VLDEADRMFD+GFE Q+ S++ Q RPDRQ+LMFSATFKR+V+ LA  +L DP+ +
Sbjct:  271 WEEMLRYREEELQVQVEG------RETCRPIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKG-EGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATTLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKMLRDPIRI 503          
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: A0A023GNE8_AMBTT (RNA helicase (Fragment) n=1 Tax=Amblyomma triste TaxID=251400 RepID=A0A023GNE8_AMBTT)

HSP 1 Score: 285 bits (729), Expect = 6.750e-90
Identity = 147/240 (61.25%), Postives = 176/240 (73.33%), Query Frame = 2
Query:    5 LNAWEVKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
            L+A EV +LR +L V V           P PV SF H GFD+ LL  + +  +  P+PIQAQ +PV +SGRDMIG+A+TGSGKT AF+WP L H+MDQRE+  G EGPI +ILAPTRELA QIY EA +F K YG      +GG  KWE  KAL+EG EIVVATPGRMI+MIK+KATN+ R T +VLDEADRMFDMGFE Q+RSI    RPDRQTLMFSATFKR+V++LA D+L DP+ V
Sbjct:   30 LSAAEVDELRVKLGVKVTGACP------PKPVTSFGHLGFDEALLKAIRKAEYSQPSPIQAQGVPVALSGRDMIGIAKTGSGKTAAFIWPLLTHIMDQRELAPG-EGPIGLILAPTRELAQQIYLEAKRFGKVYGVAAACCFGGGSKWEQSKALEEGAEIVVATPGRMIDMIKMKATNLERVTFLVLDEADRMFDMGFEPQVRSICDHVRPDRQTLMFSATFKRKVERLARDVLTDPIRV 262          
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: A0A7R9I8J6_9NEOP (RNA helicase n=1 Tax=Timema bartmani TaxID=61472 RepID=A0A7R9I8J6_9NEOP)

HSP 1 Score: 276 bits (705), Expect = 1.310e-89
Identity = 135/236 (57.20%), Postives = 176/236 (74.58%), Query Frame = 2
Query:   17 EVKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
            +V++LR +L + V   +       P PV SF H GFD+ LL  + +  +  PTPIQAQA+P  + GRD+IG+A+TGSGKT AF+WP LVH+MDQ+E+  G +GPI +ILAPTREL+ QIYTEA KF K Y  +V   YGG  KWE  KAL+ G E+VVATPGRMI+++K+KATN+ R T +VLDEADRMFDMGFE Q+RSI    RPD+QTL+FSATFK+R+++LA D+L DP+ +
Sbjct:   69 QVEELRQKLGIKVTGPLP------PNPVSSFAHFGFDEALLKAIRKSEYTQPTPIQAQAVPAALGGRDIIGIARTGSGKTAAFIWPMLVHIMDQKELQPG-DGPIGLILAPTRELSQQIYTEAKKFGKVYNIQVVCCYGGGSKWEQSKALEGGAEVVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICDHVRPDKQTLLFSATFKKRIERLARDVLTDPIRI 297          
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: A0A443SEW0_9ACAR (RNA helicase (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SEW0_9ACAR)

HSP 1 Score: 283 bits (723), Expect = 1.450e-89
Identity = 142/241 (58.92%), Postives = 181/241 (75.10%), Query Frame = 2
Query:    2 KLNAWEVKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
            +L   EV +LRN L      G++      P PV SF H GFD+ L+  + +Q +  PTPIQAQ +PVV+SGRD+IG+A+TGSGKT A++WP LVH+MDQ+E+  G +GPI +ILAPTREL+ QIY EA KF K YG  V   YGGA K+E+ K ++ G EI+VATPGRMI+MIK+KATN+RR TM+VLDEADRMFDMGFE Q+RSI    RPDRQ LMFSATFK++V+++A D+L DP+ V
Sbjct:  212 ELKTVEVNELRNRL------GIRVLGASPPKPVTSFAHFGFDEQLMKIIRKQEYTQPTPIQAQGIPVVLSGRDLIGIAKTGSGKTAAYIWPMLVHIMDQKELEPG-DGPIGLILAPTRELSQQIYIEAKKFGKAYGVSVICAYGGANKYELSKDMEAGAEIIVATPGRMIDMIKMKATNLRRVTMLVLDEADRMFDMGFEVQVRSICDHVRPDRQCLMFSATFKKKVERVARDVLTDPIKV 445          
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: UPI0015ABB885 (ATP-dependent RNA helicase DDX42-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015ABB885)

HSP 1 Score: 283 bits (725), Expect = 4.530e-89
Identity = 142/241 (58.92%), Postives = 180/241 (74.69%), Query Frame = 2
Query:    2 KLNAWEVKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
            KL+  EV+QLRN++ + V   +       P  V SF H GFD+ L+  + +  +  PTPIQAQ +P  +SGRD+IG+A+TGSGKT AF+WP LVH+MDQ+++  G +GPI +ILAPTRELA QIYTEA KF K YG  V   +GG  KWE  KAL+EG EIVVATPGRMI++IK KATN++R T +VLDEADRMFDMGFE Q+RSI    RPDRQTLMFSATFK+++++LA D+L DPV +
Sbjct:  229 KLSPEEVEQLRNKMGIKVSGALP------PKLVTSFAHFGFDEKLMKAIRKSEYTQPTPIQAQGIPAALSGRDVIGIAKTGSGKTAAFIWPLLVHIMDQKDLEPG-DGPIGLILAPTRELAQQIYTEAKKFGKVYGINVVCCFGGGSKWEQTKALQEGAEIVVATPGRMIDLIKAKATNLKRVTFLVLDEADRMFDMGFEPQVRSICDHVRPDRQTLMFSATFKKKIERLARDVLTDPVRI 462          
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: A0A0K8TAW5_LYGHE (RNA helicase n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8TAW5_LYGHE)

HSP 1 Score: 277 bits (708), Expect = 9.340e-89
Identity = 140/240 (58.33%), Postives = 176/240 (73.33%), Query Frame = 2
Query:    5 LNAWEVKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
            L+  +V +LR  L V+V           P PV SF H GFD+ L+  + +  F  PTPIQAQA+P  + GRD+IG+A+TGSGKT AFLWP L H+M QRE+ +G EGPI +ILAPTREL+ QIYTEA KF+K Y   V   YGG  KWE  KAL+EG EIVVATPGRMI++IK+KATN+ R T +VLDEADRMF++GFE Q+RSI    RPDRQTL+FSATFK+++++LA D+L DPV +
Sbjct:   65 LDDEQVAELRTHLGVTVSG------FNPPKPVTSFGHFGFDEQLIKSIRKSEFTQPTPIQAQAIPAALMGRDVIGIAKTGSGKTAAFLWPMLTHIMAQRELAQG-EGPIGLILAPTRELSQQIYTEARKFSKIYNLNVVCAYGGGSKWEQSKALEEGAEIVVATPGRMIDLIKMKATNLERVTFLVLDEADRMFELGFEAQVRSICDHVRPDRQTLLFSATFKKKIEKLARDVLIDPVRI 297          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1S4_ECTSI1.620e-16097.10DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KLM8_9PHAE2.490e-15598.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3UTY6_HETAK4.190e-10066.81Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835ZDT0_9STRA2.100e-9475.26Putative DEAD/DEAH box RNA helicase n=1 Tax=Tribon... [more]
A0A4D9D4S8_9STRA6.940e-9161.67Uncharacterized protein n=4 Tax=Monodopsidaceae Ta... [more]
A0A023GNE8_AMBTT6.750e-9061.25RNA helicase (Fragment) n=1 Tax=Amblyomma triste T... [more]
A0A7R9I8J6_9NEOP1.310e-8957.20RNA helicase n=1 Tax=Timema bartmani TaxID=61472 R... [more]
A0A443SEW0_9ACAR1.450e-8958.92RNA helicase (Fragment) n=1 Tax=Leptotrombidium de... [more]
UPI0015ABB8854.530e-8958.92ATP-dependent RNA helicase DDX42-like n=1 Tax=Steg... [more]
A0A0K8TAW5_LYGHE9.340e-8958.33RNA helicase n=1 Tax=Lygus hesperus TaxID=30085 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7200contigEcto-sp13_S_contig7200:3681..7660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size726
Hectar predicted targeting categoryother localisation
Exons6
Cds size444
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7200.18320.1prot_Ecto-sp13_S_contig7200.18320.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7200 3681..6636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463986.6696398-CDS-Ecto-sp13_S_contig7200:3680..37261681463986.6696398-CDS-Ecto-sp13_S_contig7200:3680..3726Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7200 3681..3726 +
1681463986.6851778-CDS-Ecto-sp13_S_contig7200:4487..46521681463986.6851778-CDS-Ecto-sp13_S_contig7200:4487..4652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7200 4488..4652 +
1681463986.6970394-CDS-Ecto-sp13_S_contig7200:5391..55821681463986.6970394-CDS-Ecto-sp13_S_contig7200:5391..5582Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7200 5392..5582 +
1681463986.7110312-CDS-Ecto-sp13_S_contig7200:6594..66361681463986.7110312-CDS-Ecto-sp13_S_contig7200:6594..6636Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7200 6595..6636 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463986.7267897-UTR-Ecto-sp13_S_contig7200:6636..67511681463986.7267897-UTR-Ecto-sp13_S_contig7200:6636..6751Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7200 6637..6751 +
1681463986.738438-UTR-Ecto-sp13_S_contig7200:7050..71761681463986.738438-UTR-Ecto-sp13_S_contig7200:7050..7176Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7200 7051..7176 +
1681463986.7481928-UTR-Ecto-sp13_S_contig7200:7621..76601681463986.7481928-UTR-Ecto-sp13_S_contig7200:7621..7660Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7200 7622..7660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7200.18320.1

>prot_Ecto-sp13_S_contig7200.18320.1 ID=prot_Ecto-sp13_S_contig7200.18320.1|Name=mRNA_Ecto-sp13_S_contig7200.18320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
QAQRLGGQATPQRAPGFGGGRHAEERHRRPRPRAVLQARRLRRPPAVRGC
PAGLRGSHADPGTGPARCHVGERHDRRGADRVGQDPGVLVAVPRAPHGPE
GDRQGKGRPYRGHPGANEGARRSDIHGGQQVCQEVRVQGVRRLRRCG*
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mRNA from alignment at Ecto-sp13_S_contig7200:3681..7660+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7200.18320.1 ID=mRNA_Ecto-sp13_S_contig7200.18320.1|Name=mRNA_Ecto-sp13_S_contig7200.18320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3980bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7200:3681..7660+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGCTCAACGCCTGGGAGGTCAAGCAACTCCGCAACGAGCTCCAGGTTT GATTTTGTAGGGGTGAGCACGCGTGTTTTGCACGCCGTAAGCGGTTAGAC CACCGACCACGCGTGCTCTCGAGAGGCGGAGCATGGTTGCAACGGGACCG ATCTCCGAGATGGCCAATTATCTATTTCGCCATAGGTGTTTCGTAAGTGG TTTCCATAGCCTATCGTGTCGATGGGGCGTGGGGTGGAGGGTTTCTCGAG CTTGTGAATGTTTTTTTCGACATGTTCGAAGGTTTGATGTTGATTTCGAG CAACGGCAAACGATCTAATCATGCTTCGAACAGGGGACACTTGAGAATTT GGTGGTCCTGGTTCTCGCGTGATTTATTCTCAGCAGCAGCTCTCTGCATG TGTAGATTAATGTATCGCGCCATTGTTCGGGCGGGTGTAAGAGGGGGGTT AGTAAGTGGGTTGTTGGGGGGTGCTCGGCACTCGATATCTCATGTACGAA AATTCTGAGGGGTGCGTGGATGCGTGTGTGTGGTAGTAGGGAAGTTGGGC GGCGGTTCCCCCGGCGGGGCTCCTCGCTCTTTACTCCCTCTACCCCCACT CTCTCCATTACATATCAACGTCCTGAGGTTAACCTTTGCTCTGATAGCCA GCTGTTCGCCTCCGACAAGATCTACAAAATGGGGTGACTACGCTTGAATT GTGGCTGCTGTGTTGCGAAGTACGAATTTCCCCCCTACTCCTCTCTCTGC CTGTGTCAACCCACCCTCGTGTGTTATGTTTTTTTCGTTTCTCGACGTTT TGGTTAGGTTTCGGTGGAGGCCGGCATGCAGAGGAACGACACCGGCGTCC CCGCCCCCGTGCAGTCCTTCAAGCACGCCGGCTTCGACGACCTCCTGCTG TCCGAGGTTGTCCGGCAGGGCTTCGAGGCTCCCACGCCGATCCAGGCACA GGCCCTGCCCGTTGTCATGTCGGTGAGAGTCTTTTGACGAGTGGGGCGGT TTAGTTTTCTTCGCTGACGATATCACGACAAGTTAGTCTGTATTTTTGTT GTTTTTCTTTCATTATCACAGCAGTGAATTAGTCGGTACTGGAGTGTTTT TTTTTTTTTCTTACGATCTCAAGTGAATAACAATAATATGTCTCTTTTTC TTTACTTCGATGTCACAAGTTTCATTTTCTTTTTCTCACGATATCACAAT GAGCATTGGTGTCTGTTTTTTTTCTTTCTCTTACGATATCACCACGAGGT ATTTGATCTATAACCACGGATGAGAGTTCGGGGCAATCGTCAACGAGACC ACAAGCGTTTTTTCTGGTTGATGTAGACTGTGGTGTGTGGTCTTTTTTTT ATTTGTGGTAGGTCTCTTCCGCCCTGGTGATCCTGTTTTTGGCCGTTTTG GCCTTGTTATAATCACATCAAGAAGACAGCAGTGCGACGTTTCTTGTCGG AAAACCATCCAGAGCTGGGACATGTCGAGAATACCGCCGACGCCTCCGGT AGGGAATGCCTCTCCTGTCCCACTCCTTTTGGCACGGCGCCCCGCCGAAG ATCCAGACCCTATCCCGCACTTTCTTTTTCTTTTTCGATTTTCCCGCATC ATTTTTTAACAGTTTTACGGTTGTTGTTTTTTTTTCCCCCTTTTCTGGAT CCAGTTGTTCGTTTCCATCATATTTCGCCTCACCCCACCTTCCCGCCCTT CGCGTGTCCAGGGGAGAGACATGATCGGCGTGGCGCAGACCGGGTCGGGC AAGACCCTGGCGTTCTTGTGGCCGTCCCTCGTGCACCTCATGGACCAGAG GGAGATCGTCAGGGGAAAGGAAGGCCCTATCGTGGTCATCCTGGCGCCAA CGAGGGAGCTCGCCGGTCAGATATACACGGAGGCCAACAAGTTTGCCAAG AGGTTGGTCTTGGTTATGATTTTGGCAGGGGCTCGTGTTTGTTCCCCCCC GTTTTGCTGGAGGATCGTAGCCATACGAGAGATCCAAAGGAAAGTTGAAT CTTTTGGGGGGGGGCGCGCGAGCGCGTGTGTGCGTATTTCTTGGATTCCC GTAGAGCTGCCCATCTGGTTGACCAACTAAAATTCGCTTTCTATTTGTCG CCCTTCGCCCCCGGCAGCCTGCGTGTACCGTATTGCGTGTTTCGTTGCTT GGAATATCGCGTACGTTTGCTTCGCGTGGTAAAGGACGAAAAAGAATCGC TTGCCACGCAGTCATGGTCCCTCAGCGAGGTGGTCCTGAGGAAGGCAGGG GTCACACAGCAAATACCTCCACATATTCACAAGATACCCCCTGGGTCGAT TTTTCCAAACTTGATTGCCCCACGGACGAAGAGGATGCATAGGAACGTTT TCGGCAGAATTCTTACATTTTCGGCGCCGTCACTCTTTCTGCTGTGGAAG CTTTGAAAATCGGCCCCAGGGGGGCGTGTGATGTCTTGTACTCCGTGCCG TAGCTCCTCTACAACCCTGCTCGGCTGGGGCGCGGCTGTGGTGTTGCAGC CAGCAGCTGCCAGGCTGGGCTGGGCTGCTCGTGCGCGGTATTTGTATCCC AAAGTGCGGTACATGTGGCTTTCAAAGTAGAGGCGTTAGGTTCCCCCACA AGAGCGGTACGTGCTACTCTGAAATGCCCTTTTATACTGCTGTGTTTCTT GTTTCGCTGGTGGTTTCACCAAGTGCACATCTTCGTTTGTCCTCCTCAAA AGCCATTGCAAAAATTATGAAGTTCGTGATCGTTTCCGTTGTCACAACCG ATTGTTCACCGAGTAGAATCTAGGCGCATGAAACGTCATTTTTTCCACTG GGGTTTGCGACAACGACCATCTCAGATGGAAGCCACAGGCGGCTCACGAA AGTTGTTGGTTTGTCTTGTTTTGTCTTGTCTTGCCTTGACCTCCTCCTCC GCCGGCGGCGACAGGTACGGGTGCAAGGTGTGCGCCGTCTACGGCGGTGC GGGTAAGTGGGAGATGCAGAAGGCCCTCAAGGAAGGGCCCGAGATCGTCG TGGCCACTCCTGGCCGAATGATCGAGATGATCAAGCTGAAGGCCACGAAC ATGCGGCGGTGCACCATGATGGTGAGCGAGAATGGGAAGCGGGAAGCAAA CCCGAGTTTAGCAGCAAAGAGGGCAAAACGCACAGTACAAGAGACAAGGT ATCATAGCTACGAAGTATGACAGCCCCGCCCCGCAACACAAATGACACCC AAGGGCGTGGATATTGGGTGCGGGAAGAGGAGGAGCAGTGGGCGGAGTGA TTCATTTATATATTTTTGTACATCACGATGAAGCAATGGCGCCATCACCA GGTCTGTTGTTGGTGTGCAAAGCAACGCTTCGCAAATACCTTTGCCGTGA ACTTTTGTTTTGTCTTGCAGGTTTTGGACGAGGCCGACCGGATGTTCGAC ATGGGCTTCGAGTACCAGATGCGGTCCATTGTGGCGCAGACAAGGCCCGA CAGGCAGACGCTCATGTTTAGCGCCACCTTCAAGAGACGGGTTCAGGTGG GAGGACACTGTACGACACGTTGTTTTCGACCCTTTCCTTCTTCGACCTTT GAAGCTCGCCGCCTGCCGCCAGCGGCCTCCCTCTGTTGAGTTGGAGGGGG AGGGGTGTTCCTTTGATGTTCGTGTTGTTTTATCCGGTCTGTAGTCCCGG GCACACATCTTACTGCTTCGAGTTTGTGAGGGGCGCGGTGGCGTCACCCG ATGCCCATTTTCGCGAAAACAGGGTGGGTGGGAAACATAGTATCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTATCCACC TCTCTCGATCTGCCCTATACCTCCAACCAACTCCTATTTTGGGGCGATGT CTGATTGTGTTTCCGCTGGTTCGTTTCACGCACATGACGCCTTCCGTATT GTGTCTCTGGGGCCTTGCCGCCATCTCTCGGTGCTGCACAGCAACTGGCG AGTGACATCCTTGACGACCCCGTACACGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7200:3681..7660+

>mRNA_Ecto-sp13_S_contig7200.18320.1 ID=mRNA_Ecto-sp13_S_contig7200.18320.1|Name=mRNA_Ecto-sp13_S_contig7200.18320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7200:3681..7660+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGCTCAACGCCTGGGAGGTCAAGCAACTCCGCAACGAGCTCCAGGTTT
CGGTGGAGGCCGGCATGCAGAGGAACGACACCGGCGTCCCCGCCCCCGTG
CAGTCCTTCAAGCACGCCGGCTTCGACGACCTCCTGCTGTCCGAGGTTGT
CCGGCAGGGCTTCGAGGCTCCCACGCCGATCCAGGCACAGGCCCTGCCCG
TTGTCATGTCGGGGAGAGACATGATCGGCGTGGCGCAGACCGGGTCGGGC
AAGACCCTGGCGTTCTTGTGGCCGTCCCTCGTGCACCTCATGGACCAGAG
GGAGATCGTCAGGGGAAAGGAAGGCCCTATCGTGGTCATCCTGGCGCCAA
CGAGGGAGCTCGCCGGTCAGATATACACGGAGGCCAACAAGTTTGCCAAG
AGGTACGGGTGCAAGGTGTGCGCCGTCTACGGCGGTGCGGGTAA
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