mRNA_Ecto-sp13_S_contig7200.18320.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: D7G1S4_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S4_ECTSI) HSP 1 Score: 469 bits (1208), Expect = 1.620e-160 Identity = 234/241 (97.10%), Postives = 240/241 (99.59%), Query Frame = 2
Query: 2 KLNAWEVKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
+LNAWEVKQLRNELQVSVEAG QRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAF+WPSLVHLMDQREIVRG+EGPIVVILAPTRELAGQIY+EANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLK+TNMRRCTMM+LDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV
Sbjct: 152 RLNAWEVKQLRNELQVSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGQEGPIVVILAPTRELAGQIYSEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKSTNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 392
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: A0A6H5KLM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLM8_9PHAE) HSP 1 Score: 449 bits (1154), Expect = 2.490e-155 Identity = 225/228 (98.68%), Postives = 227/228 (99.56%), Query Frame = 2
Query: 2 KLNAWEVKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQ 685
KLNAWEVKQLRNELQVSVEAG QRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAF+WPSLVHLMDQREIV+GKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQ
Sbjct: 234 KLNAWEVKQLRNELQVSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVKGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQ 461
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: A0A7S3UTY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTY6_HETAK) HSP 1 Score: 306 bits (784), Expect = 4.190e-100 Identity = 157/235 (66.81%), Postives = 181/235 (77.02%), Query Frame = 2
Query: 20 VKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
V+ LR+ L+ VE +P P+ SF+HAG D L + R G E PTPIQAQALPV + GRD+IG+A+TGSGKT AF WP L H +DQR I +G EGPI VIL+PTRELA QIY E KFAK G KVCA+ GGAGK+EMQK LK GPE+VVATPGR+IEMIK KATNMRRCT+ VLDEADRMF+MGFEYQMRSIV Q RPDRQTLMFSATFK+++Q LA DIL DPV +
Sbjct: 4 VRALRSRLECQVEGAGP-----LPRPLPSFRHAGLDPKLAQTIARLGLENPTPIQAQALPVALGGRDLIGIAKTGSGKTYAFAWPVLTHALDQRYIEKG-EGPIAVILSPTRELASQIYAEVKKFAKPLGAKVCALIGGAGKYEMQKELKTGPEVVVATPGRLIEMIKCKATNMRRCTICVLDEADRMFEMGFEYQMRSIVDQIRPDRQTLMFSATFKKKIQILARDILRDPVKI 232
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: A0A835ZDT0_9STRA (Putative DEAD/DEAH box RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT0_9STRA) HSP 1 Score: 291 bits (744), Expect = 2.100e-94 Identity = 143/190 (75.26%), Postives = 166/190 (87.37%), Query Frame = 2
Query: 155 QGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
+G EAPTPIQAQALPV +SGRD+IGVA+TGSGKT AF+WP LVH+M QREI G EGPI VIL+PTRELA QI+ +A KFAK+ G VCAV+GGAGKWEMQKAL+EGPEIVVATPGR+IEMIK+KATN+ RCT +VLDEADRMFD+GF YQMRSIV Q RP RQT++FSATFKR+V+QLA D+L DPV +
Sbjct: 33 EGLEAPTPIQAQALPVALSGRDLIGVAKTGSGKTFAFVWPVLVHVMAQREIEDG-EGPIAVILSPTRELATQIHGQAKKFAKQLGANVCAVFGGAGKWEMQKALREGPEIVVATPGRLIEMIKIKATNLARCTCVVLDEADRMFDLGFGYQMRSIVDQVRPSRQTMLFSATFKRKVEQLARDVLTDPVRI 221
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: A0A4D9D4S8_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4S8_9STRA) HSP 1 Score: 293 bits (750), Expect = 6.940e-91 Identity = 148/240 (61.67%), Postives = 188/240 (78.33%), Query Frame = 2
Query: 14 WE--VKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHA-GFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
WE ++ ELQV VE P+ SFKHA GF + LL E++++GF+APTPIQAQALP+ ++GRD++G+AQTGSGKTLAF+WP+LVHLMDQ E+V+G EGPIV+ILAPTRELA QIY EA KFAK +G +V AV+GGAGKWE K LK G EI++ATPGR++E +K KAT + RCT +VLDEADRMFD+GFE Q+ S++ Q RPDRQ+LMFSATFKR+V+ LA +L DP+ +
Sbjct: 271 WEEMLRYREEELQVQVEG------RETCRPIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKG-EGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATTLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKMLRDPIRI 503
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: A0A023GNE8_AMBTT (RNA helicase (Fragment) n=1 Tax=Amblyomma triste TaxID=251400 RepID=A0A023GNE8_AMBTT) HSP 1 Score: 285 bits (729), Expect = 6.750e-90 Identity = 147/240 (61.25%), Postives = 176/240 (73.33%), Query Frame = 2
Query: 5 LNAWEVKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
L+A EV +LR +L V V P PV SF H GFD+ LL + + + P+PIQAQ +PV +SGRDMIG+A+TGSGKT AF+WP L H+MDQRE+ G EGPI +ILAPTRELA QIY EA +F K YG +GG KWE KAL+EG EIVVATPGRMI+MIK+KATN+ R T +VLDEADRMFDMGFE Q+RSI RPDRQTLMFSATFKR+V++LA D+L DP+ V
Sbjct: 30 LSAAEVDELRVKLGVKVTGACP------PKPVTSFGHLGFDEALLKAIRKAEYSQPSPIQAQGVPVALSGRDMIGIAKTGSGKTAAFIWPLLTHIMDQRELAPG-EGPIGLILAPTRELAQQIYLEAKRFGKVYGVAAACCFGGGSKWEQSKALEEGAEIVVATPGRMIDMIKMKATNLERVTFLVLDEADRMFDMGFEPQVRSICDHVRPDRQTLMFSATFKRKVERLARDVLTDPIRV 262
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: A0A7R9I8J6_9NEOP (RNA helicase n=1 Tax=Timema bartmani TaxID=61472 RepID=A0A7R9I8J6_9NEOP) HSP 1 Score: 276 bits (705), Expect = 1.310e-89 Identity = 135/236 (57.20%), Postives = 176/236 (74.58%), Query Frame = 2
Query: 17 EVKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
+V++LR +L + V + P PV SF H GFD+ LL + + + PTPIQAQA+P + GRD+IG+A+TGSGKT AF+WP LVH+MDQ+E+ G +GPI +ILAPTREL+ QIYTEA KF K Y +V YGG KWE KAL+ G E+VVATPGRMI+++K+KATN+ R T +VLDEADRMFDMGFE Q+RSI RPD+QTL+FSATFK+R+++LA D+L DP+ +
Sbjct: 69 QVEELRQKLGIKVTGPLP------PNPVSSFAHFGFDEALLKAIRKSEYTQPTPIQAQAVPAALGGRDIIGIARTGSGKTAAFIWPMLVHIMDQKELQPG-DGPIGLILAPTRELSQQIYTEAKKFGKVYNIQVVCCYGGGSKWEQSKALEGGAEVVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFEPQVRSICDHVRPDKQTLLFSATFKKRIERLARDVLTDPIRI 297
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: A0A443SEW0_9ACAR (RNA helicase (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SEW0_9ACAR) HSP 1 Score: 283 bits (723), Expect = 1.450e-89 Identity = 142/241 (58.92%), Postives = 181/241 (75.10%), Query Frame = 2
Query: 2 KLNAWEVKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
+L EV +LRN L G++ P PV SF H GFD+ L+ + +Q + PTPIQAQ +PVV+SGRD+IG+A+TGSGKT A++WP LVH+MDQ+E+ G +GPI +ILAPTREL+ QIY EA KF K YG V YGGA K+E+ K ++ G EI+VATPGRMI+MIK+KATN+RR TM+VLDEADRMFDMGFE Q+RSI RPDRQ LMFSATFK++V+++A D+L DP+ V
Sbjct: 212 ELKTVEVNELRNRL------GIRVLGASPPKPVTSFAHFGFDEQLMKIIRKQEYTQPTPIQAQGIPVVLSGRDLIGIAKTGSGKTAAYIWPMLVHIMDQKELEPG-DGPIGLILAPTRELSQQIYIEAKKFGKAYGVSVICAYGGANKYELSKDMEAGAEIIVATPGRMIDMIKMKATNLRRVTMLVLDEADRMFDMGFEVQVRSICDHVRPDRQCLMFSATFKKKVERVARDVLTDPIKV 445
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: UPI0015ABB885 (ATP-dependent RNA helicase DDX42-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015ABB885) HSP 1 Score: 283 bits (725), Expect = 4.530e-89 Identity = 142/241 (58.92%), Postives = 180/241 (74.69%), Query Frame = 2
Query: 2 KLNAWEVKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
KL+ EV+QLRN++ + V + P V SF H GFD+ L+ + + + PTPIQAQ +P +SGRD+IG+A+TGSGKT AF+WP LVH+MDQ+++ G +GPI +ILAPTRELA QIYTEA KF K YG V +GG KWE KAL+EG EIVVATPGRMI++IK KATN++R T +VLDEADRMFDMGFE Q+RSI RPDRQTLMFSATFK+++++LA D+L DPV +
Sbjct: 229 KLSPEEVEQLRNKMGIKVSGALP------PKLVTSFAHFGFDEKLMKAIRKSEYTQPTPIQAQGIPAALSGRDVIGIAKTGSGKTAAFIWPLLVHIMDQKDLEPG-DGPIGLILAPTRELAQQIYTEAKKFGKVYGINVVCCFGGGSKWEQTKALQEGAEIVVATPGRMIDLIKAKATNLKRVTFLVLDEADRMFDMGFEPQVRSICDHVRPDRQTLMFSATFKKKIERLARDVLTDPVRI 462
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Match: A0A0K8TAW5_LYGHE (RNA helicase n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8TAW5_LYGHE) HSP 1 Score: 277 bits (708), Expect = 9.340e-89 Identity = 140/240 (58.33%), Postives = 176/240 (73.33%), Query Frame = 2
Query: 5 LNAWEVKQLRNELQVSVEAGMQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFLWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHV 724
L+ +V +LR L V+V P PV SF H GFD+ L+ + + F PTPIQAQA+P + GRD+IG+A+TGSGKT AFLWP L H+M QRE+ +G EGPI +ILAPTREL+ QIYTEA KF+K Y V YGG KWE KAL+EG EIVVATPGRMI++IK+KATN+ R T +VLDEADRMF++GFE Q+RSI RPDRQTL+FSATFK+++++LA D+L DPV +
Sbjct: 65 LDDEQVAELRTHLGVTVSG------FNPPKPVTSFGHFGFDEQLIKSIRKSEFTQPTPIQAQAIPAALMGRDVIGIAKTGSGKTAAFLWPMLTHIMAQRELAQG-EGPIGLILAPTRELSQQIYTEARKFSKIYNLNVVCAYGGGSKWEQSKALEEGAEIVVATPGRMIDLIKMKATNLERVTFLVLDEADRMFELGFEAQVRSICDHVRPDRQTLLFSATFKKKIEKLARDVLIDPVRI 297 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7200.18320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7200.18320.1 >prot_Ecto-sp13_S_contig7200.18320.1 ID=prot_Ecto-sp13_S_contig7200.18320.1|Name=mRNA_Ecto-sp13_S_contig7200.18320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp QAQRLGGQATPQRAPGFGGGRHAEERHRRPRPRAVLQARRLRRPPAVRGCback to top mRNA from alignment at Ecto-sp13_S_contig7200:3681..7660+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7200.18320.1 ID=mRNA_Ecto-sp13_S_contig7200.18320.1|Name=mRNA_Ecto-sp13_S_contig7200.18320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3980bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7200:3681..7660+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7200:3681..7660+ >mRNA_Ecto-sp13_S_contig7200.18320.1 ID=mRNA_Ecto-sp13_S_contig7200.18320.1|Name=mRNA_Ecto-sp13_S_contig7200.18320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7200:3681..7660+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |