mRNA_Ecto-sp13_S_contig7187.18304.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7187.18304.1
Unique NamemRNA_Ecto-sp13_S_contig7187.18304.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7187.18304.1 vs. uniprot
Match: A0A6H5JI20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI20_9PHAE)

HSP 1 Score: 752 bits (1942), Expect = 5.220e-258
Identity = 677/878 (77.11%), Postives = 692/878 (78.82%), Query Frame = 2
Query:  155 MNVNCDDDGG-KSIPAGTADASASSSSAAGGLDVLGQAVESATAAPPGLXXXXXXXLSPAPAASTAGPAXXXXXXXXXXXXXXXXCLVTPQDTGVVELSNAQEIQTHNIITTMPFITPLIVEATADGGAAPAESAAPGNPSCGDNVAVADASAGAAPSHELGNKGGGDSADDGTAAAEKAAGLPPTAGLESASVVANTDVTTTSAAAGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSEGGGCPTPVPAAAVTTGGISLAPXXXXXXXXXXXXXXXXXXXXXXXXXGTPAPTNTPGEGGDDASLAARADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGDGSAALDSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGPSEGALAQSRGGLAAAAAELLLVGTGDAQQAVDMEERGQGAKQEGRKXXXXXXXXXXXXXXXXRRLRADKRKALDMLRAGPEAGEDKSKRGRISQGEEEEGREGEEREPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTATTPRKNQNQKQKKLQLQPPNFEIEKHGGGKIRKRYSLDFKVKAAKYALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAELTRAQTHGGEKVSRHVRRKKSMSNGRVPATHKIEEELLAFIQRESSSCSFSNGATQAAAASGSKKVSSRAVKDKAQELMPDVFGVVPSWERDGDDYPVAFKRYEAKMSSWCHRFLKRHRVANLCENPNPIKKKRIEEEGGRHGRWGGXXXXXXXXXXGACSNGGEAEDEKDAAGAGSKEGDGDEEGVAGDEG 2785
            MN+N DDDGG KS PAGTADASASSSSAAGGLDVLGQAVESATAA PGL   XXXXLSPAPAASTAGP XXXXXXXXXXXXXXXXCLVTPQ T VVELS+AQEIQTHNIITTMPFITP +V  TADGGAAPAESAAPG+PSCG+NVAVAD +AGAAPSHELGN+GGGDS                 AGLESA+ VANTDVT         XXXXXXXXXXXXXXX        XXXXXXXXX   X    TSEGGGCPTPVPA AVTTGGISLAP   XXXXXXXXXXXXXXXXXXXXXXGT  PTNTP E GDDASLAARAD       XXXXXXXXXXX                    GSG G+AALDSS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     ELL+VG GDAQQAVD E +GQGAKQEGRK XXXXXXXXXX     RRLRADKRKALDMLR  PEAGEDKSKRG                     XXXXXXX                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  A TPRKNQN KQ+KLQLQPPNFEIEKHGGGKIRKRYSLDFKVKAA+YALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAELTRAQT GGEKVSRHVRRKKSMSNGRVPATH IEEELLAFIQRESSSCSFSNGA     AS SKKVSSRAVKDKAQELMPDVFGVVPSWERDGDDYPVAFKRYEAKMSSWCHRFLKRHRVANLCENPNPIKKKRIEEEGGRHGRW  XXXXXXXX     SNGGE E+E+DAAGAGSKEGDGDEEGVAGDEG
Sbjct:    1 MNLNGDDDGGNKSTPAGTADASASSSSAAGGLDVLGQAVESATAASPGLAPPXXXXLSPAPAASTAGPXXXXXXXXXXXXXXXXXCLVTPQGT-VVELSDAQEIQTHNIITTMPFITPPLVGTTADGGAAPAESAAPGSPSCGENVAVADVAAGAAPSHELGNRGGGDSXXXXXXXXXXXXXXXXXAGLESATAVANTDVTXXXXXXXXXXXXXXXXXXXXXXXXEAGIRTSTXXXXXXXXXETTXITPTTSEGGGCPTPVPAVAVTTGGISLAPTTMXXXXXXXXXXXXXXXXXXXXXXGTQTPTNTPAEDGDDASLAARADSSAAAVTXXXXXXXXXXXPGVATAAGTGAAGAELSDRTGSGAGAAALDSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLVVGAGDAQQAVDTEGQGQGAKQEGRKGXXXXXXXXXXRP---RRLRADKRKALDMLRMEPEAGEDKSKRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELWDAGETAAMSPATALLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATPRKNQNHKQRKLQLQPPNFEIEKHGGGKIRKRYSLDFKVKAARYALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAELTRAQTDGGEKVSRHVRRKKSMSNGRVPATHMIEEELLAFIQRESSSCSFSNGA-----ASRSKKVSSRAVKDKAQELMPDVFGVVPSWERDGDDYPVAFKRYEAKMSSWCHRFLKRHRVANLCENPNPIKKKRIEEEGGRHGRWXXXXXXXXXX-----SNGGEVENEEDAAGAGSKEGDGDEEGVAGDEG 864          
BLAST of mRNA_Ecto-sp13_S_contig7187.18304.1 vs. uniprot
Match: D7G2F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F9_ECTSI)

HSP 1 Score: 546 bits (1406), Expect = 1.630e-182
Identity = 386/480 (80.42%), Postives = 391/480 (81.46%), Query Frame = 2
Query: 1430 GALAQSRGGLAAAAAELLLVGTGDAQQAVDMEERGQGAKQEGRKXXXXXXXXXXXXXXXXRRLRADKRKALDMLRAGPEAGEDKSKRGRISQG------------------------EEEEGREGEEREPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTATTPRKNQNQKQKKLQLQPPNFEIEKHGGGKIRKRYSLDFKVKAAKYALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAELTRAQTHGGEKVSRHVRRKKSMSNGRVPATHKIEEELLAFIQRESSSCSFSNGATQAAAAS----GSKKVSSRAVKDKAQELMPDVFGVVPSWERDGDDYPVAFKRYEAKMSSWCHRFLKRHRVANLCENPNPIKKKRIEEEGGRHGRWGGXXXXXXXXXXGACSNGGEAEDEKDAAGAGSKEGDGDEEGVAGDEG 2785
            GA AQSR GLAAAAAELLLVG GDAQQAV  EERGQGAKQEGRKXXXXXXXXXXXXX   RRLRADKRKALDMLR   E GEDKSKRGR+SQ                         E  +  E EE  PA A   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                       TATTPRKNQNQKQ+KLQLQPPNFEIEKHGGGKIRKRYSLDFKVKAA+YALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAEL RAQT GGEKVSRHVRRKKSMSNGRVPATHKIEEELLAFIQRESSSCSFSNG  QA        GSKKVSSRAVKDKAQELMPDVFGVVPSWERDGDDYPVAFKRYEAKMSSWCHRFLKRHRVANLCENPNPIKKKRI EEGGRHGRW  XXXXXXXXXXGACSNGGE EDE+DAAGAGSK  DGDEEGVAGDEG
Sbjct:   61 GAPAQSRSGLAAAAAELLLVGAGDAQQAVGTEERGQGAKQEGRKXXXXXXXXXXXXXRP-RRLRADKRKALDMLRTESEPGEDKSKRGRMSQXXXXXXXXXXXXXXAVXXXXXXXXXELRDAGETEEISPATALLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------TATTPRKNQNQKQRKLQLQPPNFEIEKHGGGKIRKRYSLDFKVKAARYALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAELMRAQTDGGEKVSRHVRRKKSMSNGRVPATHKIEEELLAFIQRESSSCSFSNGVAQAXXXXXXXXGSKKVSSRAVKDKAQELMPDVFGVVPSWERDGDDYPVAFKRYEAKMSSWCHRFLKRHRVANLCENPNPIKKKRIGEEGGRHGRWXXXXXXXXXXXXGACSNGGEVEDEEDAAGAGSK--DGDEEGVAGDEG 514          
BLAST of mRNA_Ecto-sp13_S_contig7187.18304.1 vs. uniprot
Match: A0A6H5KEX4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX4_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 6.230e-10
Identity = 66/202 (32.67%), Postives = 94/202 (46.53%), Query Frame = 2
Query: 1976 LQLQPPNFEIEKHGGGKIRKRYSLDFKVKAAKYALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAELTRAQTHG--GEKVSRHVRRKKSMSNGRVPATHKIEEELLAFIQRESSSCSFSNGATQAAAASGSKKVSSRAVKDKAQELMPDVFGVVPSW-ERDGDDYPVAFKRYEAKMSSWCHRFLKRHRVA 2572
            L+L+PPNF I K GGG+ RKRY L+FKV A KYA    P  Q   GT+G                        + E +L +A   G  G+K  R V   KS + GRV +  + E ELL +I    S                S +VS+  +K+KA  L    FG  P+  + +G       ++Y  K + WC RFL+++R++
Sbjct:   35 LELEPPNFPI-KFGGGQKRKRYDLEFKVNAIKYATMQSPGAQGPNGTIGVS---------------------TKYEKQLEQADQLGAKGKKKGRSV---KSFNTGRVRSNAEAELELLDWINDVRSEAI-------------SARVSTSMIKNKAVSLNLLWFGPRPATNDLEGS------RKYRNKQTHWCRRFLRKNRLS 192          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7187.18304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JI20_9PHAE5.220e-25877.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2F9_ECTSI1.630e-18280.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEX4_9PHAE6.230e-1032.67DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7187contigEcto-sp13_S_contig7187:3282..7371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2788
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_001430.1
Cds size2634
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463984.378855-CDS-Ecto-sp13_S_contig7187:3281..37821681463984.378855-CDS-Ecto-sp13_S_contig7187:3281..3782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7187 3282..3782 -
1681463984.3887877-CDS-Ecto-sp13_S_contig7187:4754..49851681463984.3887877-CDS-Ecto-sp13_S_contig7187:4754..4985Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7187 4755..4985 -
1681463984.3977382-CDS-Ecto-sp13_S_contig7187:5315..72171681463984.3977382-CDS-Ecto-sp13_S_contig7187:5315..7217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7187 5316..7217 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463984.4060142-UTR-Ecto-sp13_S_contig7187:7217..73711681463984.4060142-UTR-Ecto-sp13_S_contig7187:7217..7371Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7187 7218..7371 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7187.18304.1prot_Ecto-sp13_S_contig7187.18304.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7187 3282..7217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7187.18304.1

>prot_Ecto-sp13_S_contig7187.18304.1 ID=prot_Ecto-sp13_S_contig7187.18304.1|Name=mRNA_Ecto-sp13_S_contig7187.18304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=878bp
MNVNCDDDGGKSIPAGTADASASSSSAAGGLDVLGQAVESATAAPPGLAP
PGLAPLSPAPAASTAGPAAPAAATTTAVPAASSACLVTPQDTGVVELSNA
QEIQTHNIITTMPFITPLIVEATADGGAAPAESAAPGNPSCGDNVAVADA
SAGAAPSHELGNKGGGDSADDGTAAAEKAAGLPPTAGLESASVVANTDVT
TTSAAAGSTAGVPAAPAAAAPAAAEAGISTSTAATPAAPPAETPTITPTT
SEGGGCPTPVPAAAVTTGGISLAPTTTTPAVPPPVATTLLTPAASRAGGG
TPAPTNTPGEGGDDASLAARADASAAAVTAVTPAAVEPLVPGVVTAEGTG
TAGAELSGGAGSGDGSAALDSSAASSSSSSNAEVVAAVPGVAVEAAARPS
SGESSSGDSSAQPPPLSSSPAGPSEGALAQSRGGLAAAAAELLLVGTGDA
QQAVDMEERGQGAKQEGRKGKQRQQQQQQQRVQRPRRLRADKRKALDMLR
AGPEAGEDKSKRGRISQGEEEEGREGEEREPAVAAAEQEEDDELRDAGEE
EISPATALLPPPPPDVPPQSAKRKRQSPKKQLQQRQAAAAAKTATTPRKN
QNQKQKKLQLQPPNFEIEKHGGGKIRKRYSLDFKVKAAKYALSPDPKGQA
RGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAELTRAQTHGGEKVSRH
VRRKKSMSNGRVPATHKIEEELLAFIQRESSSCSFSNGATQAAAASGSKK
VSSRAVKDKAQELMPDVFGVVPSWERDGDDYPVAFKRYEAKMSSWCHRFL
KRHRVANLCENPNPIKKKRIEEEGGRHGRWGGGGGAAGASGSGACSNGGE
AEDEKDAAGAGSKEGDGDEEGVAGDEG*
back to top

mRNA from alignment at Ecto-sp13_S_contig7187:3282..7371-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7187.18304.1 ID=mRNA_Ecto-sp13_S_contig7187.18304.1|Name=mRNA_Ecto-sp13_S_contig7187.18304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4090bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7187:3282..7371- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCGTGCACCGAGTAGCGAGACAGAAACCGTGGATGTACCTGCGGCAAG CACGCACACACAGCGCAGAGGCACAAAGCAGCAGGACGACGCGTGAGAGT AGGAGTTAGCCCACGAGAAGGATATCCTGGTCCGCTGGGAAAAGTGGATG GACTATGAACGTGAACTGTGATGACGATGGCGGCAAATCGATCCCGGCGG GCACCGCTGATGCGAGTGCAAGTAGCAGCAGTGCCGCCGGTGGTCTTGAT GTGCTGGGACAGGCGGTCGAGTCCGCCACGGCAGCGCCGCCAGGACTAGC GCCGCCAGGACTAGCTCCTCTATCGCCGGCGCCCGCGGCGTCAACCGCCG GGCCAGCAGCACCAGCAGCGGCAACAACAACCGCCGTTCCGGCGGCGTCT TCGGCTTGTTTGGTGACCCCGCAAGACACAGGCGTGGTGGAGCTTTCGAA CGCCCAGGAGATCCAGACCCACAACATCATTACCACCATGCCGTTCATCA CTCCGCTCATTGTGGAGGCTACTGCAGACGGCGGCGCCGCTCCGGCAGAG AGCGCGGCGCCGGGAAACCCGTCTTGCGGTGATAATGTCGCCGTCGCTGA TGCTTCTGCTGGTGCTGCTCCATCGCACGAACTGGGCAACAAGGGCGGAG GCGACTCTGCCGACGACGGTACCGCTGCTGCAGAAAAGGCAGCAGGATTA CCACCGACAGCCGGTTTGGAGTCCGCATCGGTGGTGGCGAACACGGACGT GACGACAACAAGCGCCGCTGCCGGTTCAACCGCTGGTGTTCCTGCCGCAC CGGCTGCTGCTGCGCCGGCGGCGGCGGAGGCGGGAATCAGTACCTCAACT GCTGCCACACCTGCGGCGCCCCCCGCAGAAACGCCGACCATTACCCCTAC CACTAGCGAAGGAGGCGGCTGCCCGACTCCCGTTCCTGCGGCAGCGGTGA CAACAGGAGGAATCAGTCTCGCACCAACGACGACGACGCCTGCCGTACCT CCTCCGGTAGCGACCACACTACTGACACCGGCGGCGAGCAGAGCCGGCGG CGGGACGCCGGCGCCCACAAACACCCCTGGTGAAGGTGGCGATGATGCCA GCCTGGCTGCTCGTGCCGACGCTAGCGCCGCCGCTGTTACCGCCGTTACA CCGGCAGCAGTGGAACCACTGGTACCTGGAGTGGTCACGGCGGAGGGGAC AGGTACAGCCGGTGCCGAGCTGAGTGGTGGGGCCGGTAGCGGTGATGGTT CTGCCGCTCTTGACAGTAGTGCCGCATCGTCTTCCTCCTCCTCGAATGCT GAGGTAGTGGCGGCGGTACCAGGTGTCGCCGTGGAAGCCGCCGCCAGGCC CTCCTCCGGCGAGAGCAGCAGTGGTGACAGCAGTGCCCAACCACCACCGC TGTCTTCCTCACCCGCCGGCCCATCCGAAGGTGCGCTGGCGCAGAGCCGA GGCGGGCTTGCGGCGGCAGCGGCCGAGCTGCTGCTGGTGGGCACTGGTGA TGCGCAGCAGGCGGTGGACATGGAGGAGCGGGGGCAAGGCGCGAAGCAGG AGGGGAGGAAAGGAAAGCAGCGGCAGCAGCAGCAGCAGCAGCAGAGGGTG CAACGCCCGCGGCGGCTTCGGGCCGACAAGAGAAAGGCGCTGGACATGCT GCGCGCGGGACCGGAGGCTGGCGAGGACAAGAGCAAGCGCGGGAGAATAA GCCAGGGGGAGGAAGAAGAGGGACGGGAAGGGGAGGAGAGGGAACCGGCG GTGGCAGCGGCGGAACAGGAGGAGGACGACGAATTGAGGGACGCCGGAGA AGAAGAAATATCTCCGGCCACGGCCCTTCTTCCGCCGCCGCCACCGGATG TACCACCGCAGTCGGCCAAGCGAAAAAGGCAGTCGCCGAAAAAGCAGCTG CAGCAGCGCCAAGCAGCGGCAGCAGCAAAAACGGCGACCACACCACGCAA GAATCAAAATCAGAAGCAAAAGAAGCTTCAGCTGCAACCGCCCAACTTCG AGATCGAAAAGCACGGGGGCGGGAAAATCCGCAAGCGCTACTCCTTAGAT TTCAAGGTGAACGTGGCAAAGGGTTGCGTATGGTGGTATCTACTGCACTG ATTTTTTTGTTTCCACAGGGGCAATGCCGAAAATTAGGAAGATTTTGCTT TTCGTCTGCCGCCCAATAAAGCCAGTAAGTGCTGTCGCCGCCGCGTTGTG TGTAGTTGTATCGCCGCGGATGCCCTTCTTTCTTGGACTGAATCACTTGG CCATGGTGTTCATGTACCAAGCTGACCGCCCACTCTCTCTCCGTCTTTAA CTACCCTTTCACGTACCAAGCGAACCGCCCCACCCCATTTACGTCTTCAA CTACCCCCCCCCCCCCCCCGAACCACATGGGCTCAGGTGAAGGCAGCGAA ATACGCCCTTTCCCCCGACCCTAAGGGCCAGGCACGCGGTGGCACGGTCG GGGCGCGCTACGCCGCGGCCCAGCTCGACATCCCCGAGTCGCAGAGCGTG CGGGAGTGGATGAGGCGGCTGCCGGAGATGGAGGCAGAGCTGACGCGGGC GCAGACGCACGGCGGGGAGAAGGTTTCCCGCCACGTTCGCAGGAAGAAGT CCATGTCGAATGGGCGGGTGAGGAGGGCTTATTTTTTTGGTTCTTGATGA CCCATTTGCGTGATTAGGGGTCCGACTCTTGACGACCAATTGTGTGATTT GGAGTCTGGCGAGCAAGAGACGACGCCTGCGGGTTTTCCTAGCACGGTGA TTAGTCTACACTAAAGGTGTCGACACATGTATGCATGTCCAGAGCATCTG CTGTAATTGCTTCGGTGAAGCGCTTTTGATCGTAGCACGGCGGCGGCGTT TCATCTATTATCGCGTCTCCCCCCGCCCAAATCTGTCGACATCGCCGAGT TTTCCACAGCCGTACGGTCGGACGATGGTTTCAAACGATTGCGGCGAACG ATGAAGTGATGCTCTTGCGCTAGAAGATGTCCAGGACCGGACACCATACC TCGCCATACCCGGAAGGAAGTATCGCATTACCGAGAAGTTCCGGGGTGGA AAATTCCACGCCACCGAACCCACCTCACCGGAACCTCAGGCGCTCCTACT GCACCGTGTGTTTTCGTCCAGTAAAAGATGGTGGACAACAAGCGAGTTCC AGCCTTTGGCCAAAATATTCCATTTGCCAAGGGATTCTAGTCTAACACGT CGAGTGTTCGCTGTTGTGTGGGCTTGTTCGGTACTACTACTGTGCCGTGG CCACCCCCGTCTTGGTTGGCCCTTGGGCGCTACAGGGCATCGAGGCCTGG AGCATGAACTGCGTTTCTTGGCCGTGAGGGTTGCGTGCGCGCGTGAACAC AGTTGCAAGCATTCTGGCCGGCGAGATTGGACAAAAGTCCACCGTCTTTA CTCGGCGGGTGGGTATCCTCTGTCATACACGATTTCAAGGTAGTGTTCAC AGCAACCACAACCACGTAACCTCACTTTTTGTGTTTGTGTGCGTCTCCCT TGTCTCATTCTTCCCCTCCATATATTTTCGACGAAGTACTCACGCCCCTC CCCCCCCCCATCGCCCACCCGCTTCAACAAAACAAACAGGTACCGGCTAC ACATAAGATCGAGGAGGAGCTGCTCGCCTTCATCCAGCGGGAGTCATCGT CTTGTTCGTTCTCCAACGGGGCGACTCAGGCGGCGGCGGCCTCGGGGTCG AAGAAGGTGTCTTCCCGCGCGGTCAAAGACAAGGCGCAGGAGCTCATGCC GGACGTGTTCGGGGTGGTCCCGTCTTGGGAGCGCGACGGAGACGACTACC CCGTTGCCTTCAAGAGGTACGAGGCCAAGATGAGCTCCTGGTGCCACCGG TTCCTCAAGCGCCATCGGGTGGCGAACCTGTGCGAGAACCCGAACCCGAT CAAGAAGAAGAGGATCGAGGAGGAGGGGGGCAGGCACGGGAGGTGGGGGG GCGGGGGTGGCGCCGCCGGTGCGAGCGGCTCCGGTGCTTGCTCCAACGGG GGCGAGGCCGAAGACGAGAAGGATGCCGCGGGTGCTGGTTCCAAGGAAGG AGATGGAGATGAGGAGGGTGTCGCTGGGGATGAGGGATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7187:3282..7371-

>mRNA_Ecto-sp13_S_contig7187.18304.1 ID=mRNA_Ecto-sp13_S_contig7187.18304.1|Name=mRNA_Ecto-sp13_S_contig7187.18304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2634bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7187:3282..7371- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGTGAACTGTGATGACGATGGCGGCAAATCGATCCCGGCGGGCAC
CGCTGATGCGAGTGCAAGTAGCAGCAGTGCCGCCGGTGGTCTTGATGTGC
TGGGACAGGCGGTCGAGTCCGCCACGGCAGCGCCGCCAGGACTAGCGCCG
CCAGGACTAGCTCCTCTATCGCCGGCGCCCGCGGCGTCAACCGCCGGGCC
AGCAGCACCAGCAGCGGCAACAACAACCGCCGTTCCGGCGGCGTCTTCGG
CTTGTTTGGTGACCCCGCAAGACACAGGCGTGGTGGAGCTTTCGAACGCC
CAGGAGATCCAGACCCACAACATCATTACCACCATGCCGTTCATCACTCC
GCTCATTGTGGAGGCTACTGCAGACGGCGGCGCCGCTCCGGCAGAGAGCG
CGGCGCCGGGAAACCCGTCTTGCGGTGATAATGTCGCCGTCGCTGATGCT
TCTGCTGGTGCTGCTCCATCGCACGAACTGGGCAACAAGGGCGGAGGCGA
CTCTGCCGACGACGGTACCGCTGCTGCAGAAAAGGCAGCAGGATTACCAC
CGACAGCCGGTTTGGAGTCCGCATCGGTGGTGGCGAACACGGACGTGACG
ACAACAAGCGCCGCTGCCGGTTCAACCGCTGGTGTTCCTGCCGCACCGGC
TGCTGCTGCGCCGGCGGCGGCGGAGGCGGGAATCAGTACCTCAACTGCTG
CCACACCTGCGGCGCCCCCCGCAGAAACGCCGACCATTACCCCTACCACT
AGCGAAGGAGGCGGCTGCCCGACTCCCGTTCCTGCGGCAGCGGTGACAAC
AGGAGGAATCAGTCTCGCACCAACGACGACGACGCCTGCCGTACCTCCTC
CGGTAGCGACCACACTACTGACACCGGCGGCGAGCAGAGCCGGCGGCGGG
ACGCCGGCGCCCACAAACACCCCTGGTGAAGGTGGCGATGATGCCAGCCT
GGCTGCTCGTGCCGACGCTAGCGCCGCCGCTGTTACCGCCGTTACACCGG
CAGCAGTGGAACCACTGGTACCTGGAGTGGTCACGGCGGAGGGGACAGGT
ACAGCCGGTGCCGAGCTGAGTGGTGGGGCCGGTAGCGGTGATGGTTCTGC
CGCTCTTGACAGTAGTGCCGCATCGTCTTCCTCCTCCTCGAATGCTGAGG
TAGTGGCGGCGGTACCAGGTGTCGCCGTGGAAGCCGCCGCCAGGCCCTCC
TCCGGCGAGAGCAGCAGTGGTGACAGCAGTGCCCAACCACCACCGCTGTC
TTCCTCACCCGCCGGCCCATCCGAAGGTGCGCTGGCGCAGAGCCGAGGCG
GGCTTGCGGCGGCAGCGGCCGAGCTGCTGCTGGTGGGCACTGGTGATGCG
CAGCAGGCGGTGGACATGGAGGAGCGGGGGCAAGGCGCGAAGCAGGAGGG
GAGGAAAGGAAAGCAGCGGCAGCAGCAGCAGCAGCAGCAGAGGGTGCAAC
GCCCGCGGCGGCTTCGGGCCGACAAGAGAAAGGCGCTGGACATGCTGCGC
GCGGGACCGGAGGCTGGCGAGGACAAGAGCAAGCGCGGGAGAATAAGCCA
GGGGGAGGAAGAAGAGGGACGGGAAGGGGAGGAGAGGGAACCGGCGGTGG
CAGCGGCGGAACAGGAGGAGGACGACGAATTGAGGGACGCCGGAGAAGAA
GAAATATCTCCGGCCACGGCCCTTCTTCCGCCGCCGCCACCGGATGTACC
ACCGCAGTCGGCCAAGCGAAAAAGGCAGTCGCCGAAAAAGCAGCTGCAGC
AGCGCCAAGCAGCGGCAGCAGCAAAAACGGCGACCACACCACGCAAGAAT
CAAAATCAGAAGCAAAAGAAGCTTCAGCTGCAACCGCCCAACTTCGAGAT
CGAAAAGCACGGGGGCGGGAAAATCCGCAAGCGCTACTCCTTAGATTTCA
AGGTGAAGGCAGCGAAATACGCCCTTTCCCCCGACCCTAAGGGCCAGGCA
CGCGGTGGCACGGTCGGGGCGCGCTACGCCGCGGCCCAGCTCGACATCCC
CGAGTCGCAGAGCGTGCGGGAGTGGATGAGGCGGCTGCCGGAGATGGAGG
CAGAGCTGACGCGGGCGCAGACGCACGGCGGGGAGAAGGTTTCCCGCCAC
GTTCGCAGGAAGAAGTCCATGTCGAATGGGCGGGTACCGGCTACACATAA
GATCGAGGAGGAGCTGCTCGCCTTCATCCAGCGGGAGTCATCGTCTTGTT
CGTTCTCCAACGGGGCGACTCAGGCGGCGGCGGCCTCGGGGTCGAAGAAG
GTGTCTTCCCGCGCGGTCAAAGACAAGGCGCAGGAGCTCATGCCGGACGT
GTTCGGGGTGGTCCCGTCTTGGGAGCGCGACGGAGACGACTACCCCGTTG
CCTTCAAGAGGTACGAGGCCAAGATGAGCTCCTGGTGCCACCGGTTCCTC
AAGCGCCATCGGGTGGCGAACCTGTGCGAGAACCCGAACCCGATCAAGAA
GAAGAGGATCGAGGAGGAGGGGGGCAGGCACGGGAGGTGGGGGGGCGGGG
GTGGCGCCGCCGGTGCGAGCGGCTCCGGTGCTTGCTCCAACGGGGGCGAG
GCCGAAGACGAGAAGGATGCCGCGGGTGCTGGTTCCAAGGAAGGAGATGG
AGATGAGGAGGGTGTCGCTGGGGATGAGGGATGA
back to top