mRNA_Ecto-sp13_S_contig7187.18304.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7187.18304.1 vs. uniprot
Match: A0A6H5JI20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI20_9PHAE) HSP 1 Score: 752 bits (1942), Expect = 5.220e-258 Identity = 677/878 (77.11%), Postives = 692/878 (78.82%), Query Frame = 2
Query: 155 MNVNCDDDGG-KSIPAGTADASASSSSAAGGLDVLGQAVESATAAPPGLXXXXXXXLSPAPAASTAGPAXXXXXXXXXXXXXXXXCLVTPQDTGVVELSNAQEIQTHNIITTMPFITPLIVEATADGGAAPAESAAPGNPSCGDNVAVADASAGAAPSHELGNKGGGDSADDGTAAAEKAAGLPPTAGLESASVVANTDVTTTSAAAGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSEGGGCPTPVPAAAVTTGGISLAPXXXXXXXXXXXXXXXXXXXXXXXXXGTPAPTNTPGEGGDDASLAARADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGDGSAALDSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGPSEGALAQSRGGLAAAAAELLLVGTGDAQQAVDMEERGQGAKQEGRKXXXXXXXXXXXXXXXXRRLRADKRKALDMLRAGPEAGEDKSKRGRISQGEEEEGREGEEREPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTATTPRKNQNQKQKKLQLQPPNFEIEKHGGGKIRKRYSLDFKVKAAKYALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAELTRAQTHGGEKVSRHVRRKKSMSNGRVPATHKIEEELLAFIQRESSSCSFSNGATQAAAASGSKKVSSRAVKDKAQELMPDVFGVVPSWERDGDDYPVAFKRYEAKMSSWCHRFLKRHRVANLCENPNPIKKKRIEEEGGRHGRWGGXXXXXXXXXXGACSNGGEAEDEKDAAGAGSKEGDGDEEGVAGDEG 2785
MN+N DDDGG KS PAGTADASASSSSAAGGLDVLGQAVESATAA PGL XXXXLSPAPAASTAGP XXXXXXXXXXXXXXXXCLVTPQ T VVELS+AQEIQTHNIITTMPFITP +V TADGGAAPAESAAPG+PSCG+NVAVAD +AGAAPSHELGN+GGGDS AGLESA+ VANTDVT XXXXXXXXXXXXXXX XXXXXXXXX X TSEGGGCPTPVPA AVTTGGISLAP XXXXXXXXXXXXXXXXXXXXXXGT PTNTP E GDDASLAARAD XXXXXXXXXXX GSG G+AALDSS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ELL+VG GDAQQAVD E +GQGAKQEGRK XXXXXXXXXX RRLRADKRKALDMLR PEAGEDKSKRG XXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A TPRKNQN KQ+KLQLQPPNFEIEKHGGGKIRKRYSLDFKVKAA+YALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAELTRAQT GGEKVSRHVRRKKSMSNGRVPATH IEEELLAFIQRESSSCSFSNGA AS SKKVSSRAVKDKAQELMPDVFGVVPSWERDGDDYPVAFKRYEAKMSSWCHRFLKRHRVANLCENPNPIKKKRIEEEGGRHGRW XXXXXXXX SNGGE E+E+DAAGAGSKEGDGDEEGVAGDEG
Sbjct: 1 MNLNGDDDGGNKSTPAGTADASASSSSAAGGLDVLGQAVESATAASPGLAPPXXXXLSPAPAASTAGPXXXXXXXXXXXXXXXXXCLVTPQGT-VVELSDAQEIQTHNIITTMPFITPPLVGTTADGGAAPAESAAPGSPSCGENVAVADVAAGAAPSHELGNRGGGDSXXXXXXXXXXXXXXXXXAGLESATAVANTDVTXXXXXXXXXXXXXXXXXXXXXXXXEAGIRTSTXXXXXXXXXETTXITPTTSEGGGCPTPVPAVAVTTGGISLAPTTMXXXXXXXXXXXXXXXXXXXXXXGTQTPTNTPAEDGDDASLAARADSSAAAVTXXXXXXXXXXXPGVATAAGTGAAGAELSDRTGSGAGAAALDSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLVVGAGDAQQAVDTEGQGQGAKQEGRKGXXXXXXXXXXRP---RRLRADKRKALDMLRMEPEAGEDKSKRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELWDAGETAAMSPATALLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATPRKNQNHKQRKLQLQPPNFEIEKHGGGKIRKRYSLDFKVKAARYALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAELTRAQTDGGEKVSRHVRRKKSMSNGRVPATHMIEEELLAFIQRESSSCSFSNGA-----ASRSKKVSSRAVKDKAQELMPDVFGVVPSWERDGDDYPVAFKRYEAKMSSWCHRFLKRHRVANLCENPNPIKKKRIEEEGGRHGRWXXXXXXXXXX-----SNGGEVENEEDAAGAGSKEGDGDEEGVAGDEG 864
BLAST of mRNA_Ecto-sp13_S_contig7187.18304.1 vs. uniprot
Match: D7G2F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F9_ECTSI) HSP 1 Score: 546 bits (1406), Expect = 1.630e-182 Identity = 386/480 (80.42%), Postives = 391/480 (81.46%), Query Frame = 2
Query: 1430 GALAQSRGGLAAAAAELLLVGTGDAQQAVDMEERGQGAKQEGRKXXXXXXXXXXXXXXXXRRLRADKRKALDMLRAGPEAGEDKSKRGRISQG------------------------EEEEGREGEEREPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTATTPRKNQNQKQKKLQLQPPNFEIEKHGGGKIRKRYSLDFKVKAAKYALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAELTRAQTHGGEKVSRHVRRKKSMSNGRVPATHKIEEELLAFIQRESSSCSFSNGATQAAAAS----GSKKVSSRAVKDKAQELMPDVFGVVPSWERDGDDYPVAFKRYEAKMSSWCHRFLKRHRVANLCENPNPIKKKRIEEEGGRHGRWGGXXXXXXXXXXGACSNGGEAEDEKDAAGAGSKEGDGDEEGVAGDEG 2785
GA AQSR GLAAAAAELLLVG GDAQQAV EERGQGAKQEGRKXXXXXXXXXXXXX RRLRADKRKALDMLR E GEDKSKRGR+SQ E + E EE PA A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TATTPRKNQNQKQ+KLQLQPPNFEIEKHGGGKIRKRYSLDFKVKAA+YALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAEL RAQT GGEKVSRHVRRKKSMSNGRVPATHKIEEELLAFIQRESSSCSFSNG QA GSKKVSSRAVKDKAQELMPDVFGVVPSWERDGDDYPVAFKRYEAKMSSWCHRFLKRHRVANLCENPNPIKKKRI EEGGRHGRW XXXXXXXXXXGACSNGGE EDE+DAAGAGSK DGDEEGVAGDEG
Sbjct: 61 GAPAQSRSGLAAAAAELLLVGAGDAQQAVGTEERGQGAKQEGRKXXXXXXXXXXXXXRP-RRLRADKRKALDMLRTESEPGEDKSKRGRMSQXXXXXXXXXXXXXXAVXXXXXXXXXELRDAGETEEISPATALLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------TATTPRKNQNQKQRKLQLQPPNFEIEKHGGGKIRKRYSLDFKVKAARYALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAELMRAQTDGGEKVSRHVRRKKSMSNGRVPATHKIEEELLAFIQRESSSCSFSNGVAQAXXXXXXXXGSKKVSSRAVKDKAQELMPDVFGVVPSWERDGDDYPVAFKRYEAKMSSWCHRFLKRHRVANLCENPNPIKKKRIGEEGGRHGRWXXXXXXXXXXXXGACSNGGEVEDEEDAAGAGSK--DGDEEGVAGDEG 514
BLAST of mRNA_Ecto-sp13_S_contig7187.18304.1 vs. uniprot
Match: A0A6H5KEX4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX4_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 6.230e-10 Identity = 66/202 (32.67%), Postives = 94/202 (46.53%), Query Frame = 2
Query: 1976 LQLQPPNFEIEKHGGGKIRKRYSLDFKVKAAKYALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAELTRAQTHG--GEKVSRHVRRKKSMSNGRVPATHKIEEELLAFIQRESSSCSFSNGATQAAAASGSKKVSSRAVKDKAQELMPDVFGVVPSW-ERDGDDYPVAFKRYEAKMSSWCHRFLKRHRVA 2572
L+L+PPNF I K GGG+ RKRY L+FKV A KYA P Q GT+G + E +L +A G G+K R V KS + GRV + + E ELL +I S S +VS+ +K+KA L FG P+ + +G ++Y K + WC RFL+++R++
Sbjct: 35 LELEPPNFPI-KFGGGQKRKRYDLEFKVNAIKYATMQSPGAQGPNGTIGVS---------------------TKYEKQLEQADQLGAKGKKKGRSV---KSFNTGRVRSNAEAELELLDWINDVRSEAI-------------SARVSTSMIKNKAVSLNLLWFGPRPATNDLEGS------RKYRNKQTHWCRRFLRKNRLS 192 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7187.18304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7187.18304.1 >prot_Ecto-sp13_S_contig7187.18304.1 ID=prot_Ecto-sp13_S_contig7187.18304.1|Name=mRNA_Ecto-sp13_S_contig7187.18304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=878bp MNVNCDDDGGKSIPAGTADASASSSSAAGGLDVLGQAVESATAAPPGLAPback to top mRNA from alignment at Ecto-sp13_S_contig7187:3282..7371- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7187.18304.1 ID=mRNA_Ecto-sp13_S_contig7187.18304.1|Name=mRNA_Ecto-sp13_S_contig7187.18304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4090bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7187:3282..7371- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7187:3282..7371- >mRNA_Ecto-sp13_S_contig7187.18304.1 ID=mRNA_Ecto-sp13_S_contig7187.18304.1|Name=mRNA_Ecto-sp13_S_contig7187.18304.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2634bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7187:3282..7371- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |