mRNA_Ecto-sp13_S_contig12165.1827.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12165.1827.1
Unique NamemRNA_Ecto-sp13_S_contig12165.1827.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12165.1827.1 vs. uniprot
Match: D8LKQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ1_ECTSI)

HSP 1 Score: 405 bits (1040), Expect = 8.180e-137
Identity = 256/314 (81.53%), Postives = 262/314 (83.44%), Query Frame = 1 
Query:    1 GESDELLGWEAIALGRIGIKYVRSRDDLGWYLASLHTLKKSQWPTVIAVDDVDKIIETSASXXXXXXXXXXXXXXXXXXXXXLLQDTAEFFDKSXXXXXXXXXXXXRGSTAGGTPNRTXXXXXXXXXXXXXQAADRGSGSGGNTSSPKPQPSGNLRVVGGEGESFAWTPGEGSRAAEGARPKGGGRDDVTGEAAAVRVVSTCSTSDRGMLSLYGRFVHVVARVQNTTGPDCFSLRVDPGIGTASAPYLYPRPRPSAASPPHGSGGFTPGFTPWDGGCGDGDGGRDAAAAAA----HQEVVEYVRSQIDGSFALF 930
            GESDEL GWEAIALGRIGIKYVRSRDDL WYLASLHTLKKSQWPTVIAVDDVDKIIETSA XXXXXXXXXXXXXXX      LLQDTAEFFDKS         XX RGSTAG TPNR XXXXXXXXXXXXXQ A+RGSG GGNTSSP+ QPSGNLRVVGGEGE FAWTPGEGSRAA+GARPKGGGRDD+TGEAAAVRVV+TCSTSDRGMLSLYGRFVHVVARVQNTTGPDCFSLRVDPGIGTASAP  Y RPRP+AAS   GSGGF PGFTPWDG                    HQEVVEYVRSQIDGSFALF
Sbjct:  171 GESDELRGWEAIALGRIGIKYVRSRDDLAWYLASLHTLKKSQWPTVIAVDDVDKIIETSAGXXXXXXXXXXXXXXXLRILA-LLQDTAEFFDKSRAEAAATAAXXARGSTAGSTPNRXXXXXXXXXXXXXXQPAERGSGGGGNTSSPQSQPSGNLRVVGGEGERFAWTPGEGSRAADGARPKGGGRDDITGEAAAVRVVTTCSTSDRGMLSLYGRFVHVVARVQNTTGPDCFSLRVDPGIGTASAPAPYLRPRPAAAS---GSGGFAPGFTPWDGXXXXXXXXXXXXXXXXXXXXHQEVVEYVRSQIDGSFALF 480
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BLAST of mRNA_Ecto-sp13_S_contig12165.1827.1 vs. uniprot
Match: A0A6H5LPQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPQ2_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 8.620e-53
Identity = 138/165 (83.64%), Postives = 143/165 (86.67%), Query Frame = 1 
Query:  154 VDKIIETSASXXXXXXXXXXXXXXXXXXXXX-LLQDTAEFFDKSXXXXXXXXXXXXRGSTAGGTPNRTXXXXXXXXXXXXXQAADRGSGSGGNTSSPKPQPSGNLRVVGGEGESFAWTPGEGSRAAEGARPKGGGRDDVTGEAAAVRVVSTCSTSDRGMLSLYGR 645
            +DKIIETS S   XXXXXXXXXXXXX      LLQDTAEFFDKS    XXXXXXX RGSTA GTPNRT XXXXXXXXXXXX  ADRGSGSGGNTSSP+ QPSG+LR+VGGEGE FAWTPGEGSRAAEGARPKGGG DDVTGEAAAVRVVSTCSTSDRGML+LYGR
Sbjct:    1 MDKIIETSGSGDGXXXXXXXXXXXXXALRILALLQDTAEFFDKSRAEAXXXXXXXARGSTAEGTPNRTTXXXXXXXXXXXXXPADRGSGSGGNTSSPQSQPSGSLRIVGGEGERFAWTPGEGSRAAEGARPKGGGCDDVTGEAAAVRVVSTCSTSDRGMLALYGR 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12165.1827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKQ1_ECTSI8.180e-13781.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LPQ2_9PHAE8.620e-5383.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12165contigEcto-sp13_S_contig12165:42..1768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size933
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-07_004360.1
Cds size933
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462646.505313-CDS-Ecto-sp13_S_contig12165:41..1861681462646.505313-CDS-Ecto-sp13_S_contig12165:41..186Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12165 42..186 +
1681462646.5152094-CDS-Ecto-sp13_S_contig12165:484..9831681462646.5152094-CDS-Ecto-sp13_S_contig12165:484..983Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12165 485..983 +
1681462646.5238385-CDS-Ecto-sp13_S_contig12165:1479..17681681462646.5238385-CDS-Ecto-sp13_S_contig12165:1479..1768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12165 1480..1768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12165.1827.1prot_Ecto-sp13_S_contig12165.1827.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12165 42..1768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12165.1827.1

>prot_Ecto-sp13_S_contig12165.1827.1 ID=prot_Ecto-sp13_S_contig12165.1827.1|Name=mRNA_Ecto-sp13_S_contig12165.1827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=311bp
GESDELLGWEAIALGRIGIKYVRSRDDLGWYLASLHTLKKSQWPTVIAVD
DVDKIIETSASGGGGGGGGGGGGGGAALRILALLQDTAEFFDKSRAEAAA
AAAAAARGSTAGGTPNRTTGGTPNKTTAATPQAADRGSGSGGNTSSPKPQ
PSGNLRVVGGEGESFAWTPGEGSRAAEGARPKGGGRDDVTGEAAAVRVVS
TCSTSDRGMLSLYGRFVHVVARVQNTTGPDCFSLRVDPGIGTASAPYLYP
RPRPSAASPPHGSGGFTPGFTPWDGGCGDGDGGRDAAAAAAHQEVVEYVR
SQIDGSFALF*
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mRNA from alignment at Ecto-sp13_S_contig12165:42..1768+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12165.1827.1 ID=mRNA_Ecto-sp13_S_contig12165.1827.1|Name=mRNA_Ecto-sp13_S_contig12165.1827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1727bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12165:42..1768+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGAGAGTGACGAGCTGCTTGGGTGGGAGGCGATCGCCCTCGGCAGGAT
CGGCATCAAGTACGTCCGCTCTCGAGACGACCTCGGCTGGTACCTCGCCA
GCCTGCACACGCTCAAGAAGAGCCAGTGGCCGACGGTGATCGCAGGTGAG
CTTTTTTTTGCTCACATGACTATTTATGCTTACACTTCTGCTGTGTGCGT
GTGTCTACTTTGAAGGCCTGTTGTAGTCGACGGCAGCCATCGAAATAATA
ACGAAAATAACGGCTGAAACGCCGCCGGTCCTTTTTAGCGTGGATTCTTG
CTAACATTGGACGCCTGGTACGTGTCATTGGTCATCCGACACGGCGTCTC
CGCGCAGCGCAACAGTTGTCACCAAGTCCGACCGATGTCGCCGCCGATCC
CGGCCCTGAAAATAATGATTGGCGTCCTCCCTACCCTTTTCAGTCGATGA
TGTGGACAAGATCATCGAGACATCGGCGAGCGGCGGCGGCGGTGGCGGCG
GTGGTGGTGGTGGAGGAGGAGGAGCAGCGTTGAGAATACTGGCGCTCCTT
CAGGACACAGCTGAATTCTTCGACAAGTCGAGAGCCGAAGCTGCTGCCGC
CGCCGCTGCTGCCGCTCGCGGTTCAACCGCGGGAGGTACTCCGAACAGAA
CAACGGGAGGAACTCCGAACAAAACAACCGCCGCCACCCCTCAAGCGGCG
GATAGGGGGAGTGGTAGCGGCGGCAACACCTCATCGCCCAAACCCCAACC
ATCGGGCAACTTAAGGGTAGTAGGTGGAGAGGGAGAAAGCTTTGCTTGGA
CGCCAGGCGAAGGGAGTCGGGCAGCGGAGGGAGCGAGACCAAAAGGAGGT
GGGCGTGACGACGTAACGGGTGAGGCGGCGGCCGTGCGCGTGGTGAGCAC
CTGCTCGACGTCAGACCGGGGGATGCTGTCGCTTTATGGACGGTAAGTCA
AGCCAGGCAAAGACCAACTCTTGATAACCAATCTCTTTCTTTGTCCTCGG
TTTTGCCAATTTTCCCCAAACGTGAACGCCGGTACGGCACCTCCGTGGAA
CTAATCTGTTTGTTGCGGCTTGCGATACGTACCGTTTGTTTTTAGGCGGA
ATCGTTGCTGCTGTGGGGGCACAGCCCCGTCGGTCACTTGGCTTTCGTGC
CTTTGTTTTCCATGACCCTGTGGCTGTGGCTTACACCAGATCCCCTGTCC
CTCCCACCCAAGCGTGCTGGCAATGCTGCGGTGCTTCGGTCGATCAATCC
GAAAATTCGGTCTATGTGGTTGTAAGCTTGTCCGACCGTTCCATTTGACA
CCGCCGCCGCCGCACGCGCTGAAGCCCTCCCCCCCGGATCGCGTGCTCGC
CTCACCCGTACCCACTACCATCTCGCCTCCCCTTCCCCCCGGCATGACAC
GAATTCTATCCAACCCCGCTGGGTTGGAATCGGAAAAGCTTCGTCCACGT
GGTTGCGAGGGTGCAAAATACGACCGGGCCGGACTGCTTCTCCTTGAGGG
TCGACCCCGGCATCGGCACAGCGTCTGCCCCTTACCTTTACCCTCGTCCT
CGCCCTTCGGCCGCTTCGCCGCCCCACGGGTCTGGAGGGTTCACCCCGGG
ATTCACGCCATGGGACGGCGGTTGCGGTGATGGCGATGGTGGTCGTGATG
CTGCTGCTGCTGCTGCACATCAGGAAGTGGTGGAGTACGTGCGGTCTCAG
ATAGATGGGTCGTTTGCGCTGTTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12165:42..1768+

>mRNA_Ecto-sp13_S_contig12165.1827.1 ID=mRNA_Ecto-sp13_S_contig12165.1827.1|Name=mRNA_Ecto-sp13_S_contig12165.1827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12165:42..1768+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGAGAGTGACGAGCTGCTTGGGTGGGAGGCGATCGCCCTCGGCAGGAT
CGGCATCAAGTACGTCCGCTCTCGAGACGACCTCGGCTGGTACCTCGCCA
GCCTGCACACGCTCAAGAAGAGCCAGTGGCCGACGGTGATCGCAGTCGAT
GATGTGGACAAGATCATCGAGACATCGGCGAGCGGCGGCGGCGGTGGCGG
CGGTGGTGGTGGTGGAGGAGGAGGAGCAGCGTTGAGAATACTGGCGCTCC
TTCAGGACACAGCTGAATTCTTCGACAAGTCGAGAGCCGAAGCTGCTGCC
GCCGCCGCTGCTGCCGCTCGCGGTTCAACCGCGGGAGGTACTCCGAACAG
AACAACGGGAGGAACTCCGAACAAAACAACCGCCGCCACCCCTCAAGCGG
CGGATAGGGGGAGTGGTAGCGGCGGCAACACCTCATCGCCCAAACCCCAA
CCATCGGGCAACTTAAGGGTAGTAGGTGGAGAGGGAGAAAGCTTTGCTTG
GACGCCAGGCGAAGGGAGTCGGGCAGCGGAGGGAGCGAGACCAAAAGGAG
GTGGGCGTGACGACGTAACGGGTGAGGCGGCGGCCGTGCGCGTGGTGAGC
ACCTGCTCGACGTCAGACCGGGGGATGCTGTCGCTTTATGGACGCTTCGT
CCACGTGGTTGCGAGGGTGCAAAATACGACCGGGCCGGACTGCTTCTCCT
TGAGGGTCGACCCCGGCATCGGCACAGCGTCTGCCCCTTACCTTTACCCT
CGTCCTCGCCCTTCGGCCGCTTCGCCGCCCCACGGGTCTGGAGGGTTCAC
CCCGGGATTCACGCCATGGGACGGCGGTTGCGGTGATGGCGATGGTGGTC
GTGATGCTGCTGCTGCTGCTGCACATCAGGAAGTGGTGGAGTACGTGCGG
TCTCAGATAGATGGGTCGTTTGCGCTGTTCTGA
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