mRNA_Ecto-sp13_S_contig12164.1826.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: D7G0Y5_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Y5_ECTSI) HSP 1 Score: 155 bits (393), Expect = 8.840e-46 Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1
Query: 4 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
HMKEGLLSMVRNADAQGDSRFFISIKDDAGWAD+RYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML
Sbjct: 189 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 264
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: A0A835YNC6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNC6_9STRA) HSP 1 Score: 100 bits (250), Expect = 4.730e-25 Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 1
Query: 4 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
H EG++SMVR D + DSRFFI+IK DAGWAD RYVAFGR+ EG+D + I+++KV+ +N+P KPVVIE+C ML
Sbjct: 109 HGAEGMVSMVRGPDTKNDSRFFITIKPDAGWADGRYVAFGRVLEGLDALRGIDQLKVQTPSNRPLKPVVIEECVML 184
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: A0A6V1WNP3_HETAK (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WNP3_HETAK) HSP 1 Score: 88.6 bits (218), Expect = 7.150e-20 Identity = 41/76 (53.95%), Postives = 51/76 (67.11%), Query Frame = 1
Query: 4 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
H GL+SM R D + DSRFFI + DAGWAD +YVAFG++ EG VV IE++K + N P K VVIE CG+L
Sbjct: 156 HTDAGLVSMARGLDGKTDSRFFIQTQGDAGWADGKYVAFGKVTEGFTVVQEIEKLKTQPPQNNPTKKVVIEDCGVL 231
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: A0A6V2NXR4_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2NXR4_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 7.430e-20 Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 1
Query: 4 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
H K+GL+SMVR+ DSRFFI+ DDAGWAD++Y AFG + +GMD V IE+V V N PK PV I CG+L
Sbjct: 155 HTKKGLVSMVRSLSGGVDSRFFINCNDDAGWADDKYAAFGIVEDGMDYVKKIEKVSVSPPKNSPKTPVTIIGCGVL 230
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: A0A7S4MQY5_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MQY5_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.200e-19 Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 1
Query: 4 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
H K GL+SMV++ DSRFFI+IKDDAGWAD+RY AFG + EGMD+V IE+V V N PK + I++ G+L
Sbjct: 204 HTKAGLVSMVKDKSGGADSRFFITIKDDAGWADDRYAAFGIVEEGMDLVGKIEKVDVSRPKNTPKVAISIQRSGLL 279
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: B8C839_THAPS (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C839_THAPS) HSP 1 Score: 83.6 bits (205), Expect = 2.070e-18 Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 4 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAE-----GMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
H +GL+S VRNA+ DSRFFI +DDAGWAD+RY AFG + E GM++V + R++V+ N PK PV+I CG+L
Sbjct: 98 HRTKGLVSAVRNANGTIDSRFFIQTEDDAGWADDRYAAFGIVLEEEGTGGMELVKKLSRLEVKAPQNSPKDPVLIVGCGLL 178
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: A0A7R9W6P2_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6P2_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 4.920e-18 Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 1
Query: 4 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
H K GL+SMVR+ DSRFFI++KDDAGWAD+RY AFG + EGMD+V IE+V V N PK V I G +
Sbjct: 111 HTKAGLVSMVRDKTGGVDSRFFINLKDDAGWADDRYAAFGIVEEGMDLVGKIEKVDVARPKNTPKVAVRITGSGFV 186
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: A0A4D9CTD0_9STRA (PPIase cyclophilin-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTD0_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 2.340e-17 Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 1 QHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
QH EG+LSMV + DSRFFI++ D WAD RYVAFGR+ +G++V+ +E+V+V+ +N P P+ I G+L
Sbjct: 31 QHSLEGMLSMVNDKSGMVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 107
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: A0A5J4Z0I4_PORPP (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0I4_PORPP) HSP 1 Score: 80.1 bits (196), Expect = 4.920e-17 Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 4 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
H GL+SM D + DSRF I K D+G+ D RY+AFGR+ EGM V++ +E + G N+PK+PV I CG+L
Sbjct: 86 HSVAGLISMCHARDGKADSRFLIQTKADSGYLDGRYIAFGRVLEGMSVIYHMEEIGGVGPQNRPKQPVTIVDCGLL 161
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: K8YUC4_NANGC (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUC4_NANGC) HSP 1 Score: 78.6 bits (192), Expect = 5.240e-16 Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 1 QHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
QH EG+LSMV + DSRFFI++ D WAD RYVAFGR+ +G++V+ +E+V+V+ +N P P+ I G+L
Sbjct: 158 QHSLEGMLSMVNDKSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 234 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12164.1826.1 >prot_Ecto-sp13_S_contig12164.1826.1 ID=prot_Ecto-sp13_S_contig12164.1826.1|Name=mRNA_Ecto-sp13_S_contig12164.1826.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp MKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLback to top mRNA from alignment at Ecto-sp13_S_contig12164:25..651+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12164.1826.1 ID=mRNA_Ecto-sp13_S_contig12164.1826.1|Name=mRNA_Ecto-sp13_S_contig12164.1826.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12164:25..651+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12164:25..651+ >mRNA_Ecto-sp13_S_contig12164.1826.1 ID=mRNA_Ecto-sp13_S_contig12164.1826.1|Name=mRNA_Ecto-sp13_S_contig12164.1826.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12164:25..651+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |