mRNA_Ecto-sp13_S_contig12164.1826.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12164.1826.1
Unique NamemRNA_Ecto-sp13_S_contig12164.1826.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: D7G0Y5_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Y5_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 8.840e-46
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    4 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
            HMKEGLLSMVRNADAQGDSRFFISIKDDAGWAD+RYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML
Sbjct:  189 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 264          
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: A0A835YNC6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNC6_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.730e-25
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    4 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
            H  EG++SMVR  D + DSRFFI+IK DAGWAD RYVAFGR+ EG+D +  I+++KV+  +N+P KPVVIE+C ML
Sbjct:  109 HGAEGMVSMVRGPDTKNDSRFFITIKPDAGWADGRYVAFGRVLEGLDALRGIDQLKVQTPSNRPLKPVVIEECVML 184          
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: A0A6V1WNP3_HETAK (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WNP3_HETAK)

HSP 1 Score: 88.6 bits (218), Expect = 7.150e-20
Identity = 41/76 (53.95%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    4 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
            H   GL+SM R  D + DSRFFI  + DAGWAD +YVAFG++ EG  VV  IE++K +   N P K VVIE CG+L
Sbjct:  156 HTDAGLVSMARGLDGKTDSRFFIQTQGDAGWADGKYVAFGKVTEGFTVVQEIEKLKTQPPQNNPTKKVVIEDCGVL 231          
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: A0A6V2NXR4_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2NXR4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 7.430e-20
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    4 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
            H K+GL+SMVR+     DSRFFI+  DDAGWAD++Y AFG + +GMD V  IE+V V    N PK PV I  CG+L
Sbjct:  155 HTKKGLVSMVRSLSGGVDSRFFINCNDDAGWADDKYAAFGIVEDGMDYVKKIEKVSVSPPKNSPKTPVTIIGCGVL 230          
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: A0A7S4MQY5_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MQY5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.200e-19
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    4 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
            H K GL+SMV++     DSRFFI+IKDDAGWAD+RY AFG + EGMD+V  IE+V V    N PK  + I++ G+L
Sbjct:  204 HTKAGLVSMVKDKSGGADSRFFITIKDDAGWADDRYAAFGIVEEGMDLVGKIEKVDVSRPKNTPKVAISIQRSGLL 279          
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: B8C839_THAPS (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C839_THAPS)

HSP 1 Score: 83.6 bits (205), Expect = 2.070e-18
Identity = 41/81 (50.62%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    4 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAE-----GMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
            H  +GL+S VRNA+   DSRFFI  +DDAGWAD+RY AFG + E     GM++V  + R++V+   N PK PV+I  CG+L
Sbjct:   98 HRTKGLVSAVRNANGTIDSRFFIQTEDDAGWADDRYAAFGIVLEEEGTGGMELVKKLSRLEVKAPQNSPKDPVLIVGCGLL 178          
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: A0A7R9W6P2_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6P2_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.920e-18
Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    4 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
            H K GL+SMVR+     DSRFFI++KDDAGWAD+RY AFG + EGMD+V  IE+V V    N PK  V I   G +
Sbjct:  111 HTKAGLVSMVRDKTGGVDSRFFINLKDDAGWADDRYAAFGIVEEGMDLVGKIEKVDVARPKNTPKVAVRITGSGFV 186          
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: A0A4D9CTD0_9STRA (PPIase cyclophilin-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTD0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.340e-17
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 QHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
            QH  EG+LSMV +     DSRFFI++  D  WAD RYVAFGR+ +G++V+  +E+V+V+  +N P  P+ I   G+L
Sbjct:   31 QHSLEGMLSMVNDKSGMVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 107          
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: A0A5J4Z0I4_PORPP (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0I4_PORPP)

HSP 1 Score: 80.1 bits (196), Expect = 4.920e-17
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    4 HMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
            H   GL+SM    D + DSRF I  K D+G+ D RY+AFGR+ EGM V++ +E +   G  N+PK+PV I  CG+L
Sbjct:   86 HSVAGLISMCHARDGKADSRFLIQTKADSGYLDGRYIAFGRVLEGMSVIYHMEEIGGVGPQNRPKQPVTIVDCGLL 161          
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Match: K8YUC4_NANGC (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUC4_NANGC)

HSP 1 Score: 78.6 bits (192), Expect = 5.240e-16
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 QHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 231
            QH  EG+LSMV +     DSRFFI++  D  WAD RYVAFGR+ +G++V+  +E+V+V+  +N P  P+ I   G+L
Sbjct:  158 QHSLEGMLSMVNDKSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 234          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12164.1826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Y5_ECTSI8.840e-4698.68Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A835YNC6_9STRA4.730e-2560.53Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A6V1WNP3_HETAK7.150e-2053.95Peptidyl-prolyl cis-trans isomerase n=1 Tax=Hetero... [more]
A0A6V2NXR4_9STRA7.430e-2055.26Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ditylu... [more]
A0A7S4MQY5_9STRA1.200e-1955.26Peptidyl-prolyl cis-trans isomerase n=2 Tax=Odonte... [more]
B8C839_THAPS2.070e-1850.62Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A7R9W6P2_9STRA4.920e-1855.26Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudi... [more]
A0A4D9CTD0_9STRA2.340e-1746.75PPIase cyclophilin-type domain-containing protein ... [more]
A0A5J4Z0I4_PORPP4.920e-1747.37Peptidyl-prolyl cis-trans isomerase n=1 Tax=Porphy... [more]
K8YUC4_NANGC5.240e-1646.75Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12164contigEcto-sp13_S_contig12164:25..651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score153.7
Seed ortholog evalue3.5e-35
Seed eggNOG ortholog2880.D7G0Y5
Model size234
KEGG koko:K01262,ko:K03768
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0880@2759
EC3.4.11.9,5.2.1.8
Cds size228
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462646.4508836-UTR-Ecto-sp13_S_contig12164:24..301681462646.4508836-UTR-Ecto-sp13_S_contig12164:24..30Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12164 25..30 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462646.4614024-CDS-Ecto-sp13_S_contig12164:30..861681462646.4614024-CDS-Ecto-sp13_S_contig12164:30..86Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12164 31..86 +
1681462646.4709594-CDS-Ecto-sp13_S_contig12164:479..6511681462646.4709594-CDS-Ecto-sp13_S_contig12164:479..651Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12164 480..651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12164.1826.1prot_Ecto-sp13_S_contig12164.1826.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12164 31..651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12164.1826.1

>prot_Ecto-sp13_S_contig12164.1826.1 ID=prot_Ecto-sp13_S_contig12164.1826.1|Name=mRNA_Ecto-sp13_S_contig12164.1826.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
MKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHL
IERVKVEGGTNKPKKPVVIEKCGML*
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mRNA from alignment at Ecto-sp13_S_contig12164:25..651+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12164.1826.1 ID=mRNA_Ecto-sp13_S_contig12164.1826.1|Name=mRNA_Ecto-sp13_S_contig12164.1826.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12164:25..651+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCACATGAAGGAAGGGCTGCTGAGCATGGTCAGGAACGCGGACGCGCA GGGGGACAGCCGGTGAGCAAACGACCCTCCTATATCCTATGCCGCCAAGC ACGGGTCCTTTACCTTCATTTCTTCCCCGTAAAGGCAGTCACTGCCCTGA CGGTCTCGCTCGCTCAATTGCAGCTGTCGTGAGTTGCAAGGTCGTTCTCA CCCCACGGTGTGTGGTTCTGCTAACATGGCTCGGTTTCACGTACTAGATA CCGGCGTCAGCCTCCTTCTGCCTTCTTGGACCAGCATCCCGGTAGTGGGA GAATTTGGAGAAAAAATTAGAAGGCGGGGAGAGAGAGATACTGCAGATAA GAGTGCTGACATTAGCTCGGGCACACGAGTCGTGTCGTCTTTTGCTAGAC TTCCAACTGCTTGCGAACGCTTGCGCGCGTGTTTACCTTTCGTGCACCCC ACCAGATTCTTCATCTCCATCAAGGATGACGCGGGGTGGGCGGATAACCG CTACGTGGCCTTCGGGCGAATTGCTGAGGGGATGGACGTGGTGCACCTGA TAGAGCGCGTCAAGGTGGAGGGGGGCACAAACAAACCCAAAAAGCCGGTG GTAATAGAAAAGTGCGGAATGCTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12164:25..651+

>mRNA_Ecto-sp13_S_contig12164.1826.1 ID=mRNA_Ecto-sp13_S_contig12164.1826.1|Name=mRNA_Ecto-sp13_S_contig12164.1826.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12164:25..651+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGAAGGGCTGCTGAGCATGGTCAGGAACGCGGACGCGCAGGGGGA
CAGCCGATTCTTCATCTCCATCAAGGATGACGCGGGGTGGGCGGATAACC
GCTACGTGGCCTTCGGGCGAATTGCTGAGGGGATGGACGTGGTGCACCTG
ATAGAGCGCGTCAAGGTGGAGGGGGGCACAAACAAACCCAAAAAGCCGGT
GGTAATAGAAAAGTGCGGAATGCTTTAG
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