prot_Ecto-sp13_S_contig7151.18259.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7151.18259.1
Unique Nameprot_Ecto-sp13_S_contig7151.18259.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length100
Homology
BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: D8LNZ8_ECTSI (60S ribosomal export protein NMD3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNZ8_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 2.070e-63
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0
Query:    1 MPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 100
            MPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL
Sbjct:   23 MPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 122          
BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: A0A835ZB23_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB23_9STRA)

HSP 1 Score: 159 bits (401), Expect = 3.960e-44
Identity = 73/98 (74.49%), Postives = 83/98 (84.69%), Query Frame = 0
Query:    3 TILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 100
            T+ CC+CS PI PNPT MCV CIRTQVDITEGIA   T+ QCRGC R+L+P WVE  LESRELMA+CLRK+SGL +VKLVDASW+WTE HSRRLK+KL
Sbjct:   18 TVACCICSAPIKPNPTHMCVQCIRTQVDITEGIALKPTIFQCRGCMRWLKPNWVEATLESRELMAICLRKVSGLNRVKLVDASWVWTEAHSRRLKLKL 115          
BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: A0A7R9U6W2_9STRA (60S ribosomal export protein NMD3 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6W2_9STRA)

HSP 1 Score: 154 bits (388), Expect = 1.780e-43
Identity = 66/100 (66.00%), Postives = 86/100 (86.00%), Query Frame = 0
Query:    1 MPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 100
            +P ILCC C + IPPNPT+MCV C+R++VD+TEG+ T+  ++QCR CQR+LRP W+  +LESRELMA+CLRK++GL+ VKLVDA W+WTEPHSRRL+VKL
Sbjct:   36 IPNILCCECGVSIPPNPTAMCVSCLRSKVDVTEGLTTSANVYQCRSCQRWLRPPWINAELESRELMALCLRKVNGLQGVKLVDAEWVWTEPHSRRLRVKL 135          
BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: A0A2J7RRM0_9NEOP (60S ribosomal export protein NMD3 n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RRM0_9NEOP)

HSP 1 Score: 143 bits (360), Expect = 1.220e-40
Identity = 64/99 (64.65%), Postives = 81/99 (81.82%), Query Frame = 0
Query:    4 ILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPG--WVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 100
            ILCC C  PI PNP++MCV C+RTQVDITEGI    T+H C+GC+RYL+P   WV C LESREL+++CL+K+ GL +VKLVDA ++WTEPHS+R+KVKL
Sbjct:   17 ILCCQCGTPIEPNPSNMCVACLRTQVDITEGIPKQATLHFCKGCERYLQPPSEWVPCALESRELLSLCLKKLKGLNRVKLVDAGFVWTEPHSKRIKVKL 115          
BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: T0RPV6_SAPDV (60S ribosomal export protein NMD3 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=T0RPV6_SAPDV)

HSP 1 Score: 148 bits (373), Expect = 3.490e-40
Identity = 65/100 (65.00%), Postives = 82/100 (82.00%), Query Frame = 0
Query:    1 MPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 100
            +P ILCCMC++PI  N  +MCV C++ QVD+TEGI   + MHQCRGC ++ RP WV  +LESREL+A+CL+KISGL KVKLVDA W+WTEPHS+RLK+KL
Sbjct:    9 LPNILCCMCAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPPWVAAELESRELLAICLKKISGLNKVKLVDAGWVWTEPHSKRLKLKL 108          
BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: A0A2J7RRM1_9NEOP (60S ribosomal export protein NMD3 n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7RRM1_9NEOP)

HSP 1 Score: 143 bits (360), Expect = 1.490e-39
Identity = 64/99 (64.65%), Postives = 81/99 (81.82%), Query Frame = 0
Query:    4 ILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPG--WVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 100
            ILCC C  PI PNP++MCV C+RTQVDITEGI    T+H C+GC+RYL+P   WV C LESREL+++CL+K+ GL +VKLVDA ++WTEPHS+R+KVKL
Sbjct:   17 ILCCQCGTPIEPNPSNMCVACLRTQVDITEGIPKQATLHFCKGCERYLQPPSEWVPCALESRELLSLCLKKLKGLNRVKLVDAGFVWTEPHSKRIKVKL 115          
BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: A0A6G0XWA3_9STRA (60S ribosomal export protein NMD3 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWA3_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.560e-39
Identity = 64/100 (64.00%), Postives = 82/100 (82.00%), Query Frame = 0
Query:    1 MPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 100
            +P ILCC+C++PI  N  +MCV C++ QVD+TEGI   + MHQCRGC ++ RP WV  +LESREL+A+CL+KI+GL KVKLVDA WIWTEPHS+RLK+KL
Sbjct:    8 LPDILCCICAVPIKANAANMCVSCLKGQVDVTEGIPKEIIMHQCRGCLKWSRPQWVSAELESRELLAICLKKITGLNKVKLVDAGWIWTEPHSKRLKLKL 107          
BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: A0A1X7T227_AMPQE (60S ribosomal export protein NMD3 n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7T227_AMPQE)

HSP 1 Score: 139 bits (351), Expect = 3.250e-39
Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 0
Query:    1 MPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRP--GWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 100
            M  ILCC C   I PNP +MCV C+RTQVDITEGI    T++ CR C+RYL+P  GWV C LESREL+A+CL+K+ GL KV LVDA +IWTEPHS+RLK+KL
Sbjct:   15 MQRILCCQCGTMIEPNPANMCVACLRTQVDITEGIPKQSTVYFCRSCERYLQPPSGWVSCSLESRELLALCLKKLKGLGKVHLVDAGFIWTEPHSKRLKIKL 116          
BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: W2I7I2_PHYPR (60S ribosomal export protein NMD3 n=9 Tax=Peronosporaceae TaxID=4777 RepID=W2I7I2_PHYPR)

HSP 1 Score: 145 bits (365), Expect = 5.090e-39
Identity = 64/100 (64.00%), Postives = 82/100 (82.00%), Query Frame = 0
Query:    1 MPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 100
            MPTILCCMC+ PI  N  + CV C+++QVD+TEGI   + +HQCRGC R+ RP WV  +LESREL+A+CL+KI+ L +VKL+DA+WIWTEPHSRRLK+KL
Sbjct:    8 MPTILCCMCATPIVANAANTCVSCLKSQVDVTEGIPKEVIIHQCRGCMRWSRPPWVAAELESRELLAMCLKKINNLNRVKLIDANWIWTEPHSRRLKLKL 107          
BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Match: D0MSQ0_PHYIT (60S ribosomal export protein NMD3 n=18 Tax=Peronosporaceae TaxID=4777 RepID=D0MSQ0_PHYIT)

HSP 1 Score: 145 bits (365), Expect = 5.220e-39
Identity = 64/100 (64.00%), Postives = 82/100 (82.00%), Query Frame = 0
Query:    1 MPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRYLRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL 100
            MPTILCCMC+ PI  N  + CV C+++QVD+TEGI   + +HQCRGC R+ RP WV  +LESREL+A+CL+KI+ L +VKL+DA+WIWTEPHSRRLK+KL
Sbjct:    8 MPTILCCMCATPIVANAANTCVSCLKSQVDVTEGIPKEVIIHQCRGCMRWSRPPWVAAELESRELLAMCLKKINNLNRVKLIDANWIWTEPHSRRLKLKL 107          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7151.18259.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNZ8_ECTSI2.070e-63100.0060S ribosomal export protein NMD3 n=2 Tax=Ectocarp... [more]
A0A835ZB23_9STRA3.960e-4474.4960S ribosomal export protein NMD3 n=1 Tax=Tribonem... [more]
A0A7R9U6W2_9STRA1.780e-4366.0060S ribosomal export protein NMD3 (Fragment) n=1 T... [more]
A0A2J7RRM0_9NEOP1.220e-4064.6560S ribosomal export protein NMD3 n=1 Tax=Cryptote... [more]
T0RPV6_SAPDV3.490e-4065.0060S ribosomal export protein NMD3 n=4 Tax=Saproleg... [more]
A0A2J7RRM1_9NEOP1.490e-3964.6560S ribosomal export protein NMD3 n=1 Tax=Cryptote... [more]
A0A6G0XWA3_9STRA2.560e-3964.0060S ribosomal export protein NMD3 n=1 Tax=Aphanomy... [more]
A0A1X7T227_AMPQE3.250e-3964.7160S ribosomal export protein NMD3 n=2 Tax=Amphimed... [more]
W2I7I2_PHYPR5.090e-3964.0060S ribosomal export protein NMD3 n=9 Tax=Peronosp... [more]
D0MSQ0_PHYIT5.220e-3964.0060S ribosomal export protein NMD3 n=18 Tax=Peronos... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007064Nmd3, N-terminalPFAMPF04981NMD3coord: 6..100
e-value: 3.6E-25
score: 88.9
NoneNo IPR availablePANTHERPTHR12746:SF260S RIBOSOMAL EXPORT PROTEIN NMD3coord: 2..100
IPR039768Ribosomal export protein Nmd3PANTHERPTHR12746NONSENSE-MEDIATED MRNA DECAY PROTEIN 3coord: 2..100

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7151contigEcto-sp13_S_contig7151:7115..7701 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7151.18259.1mRNA_Ecto-sp13_S_contig7151.18259.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7151 7103..7701 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7151.18259.1 ID=prot_Ecto-sp13_S_contig7151.18259.1|Name=mRNA_Ecto-sp13_S_contig7151.18259.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MPTILCCMCSLPIPPNPTSMCVLCIRTQVDITEGIATNLTMHQCRGCQRY
LRPGWVECKLESRELMAVCLRKISGLKKVKLVDASWIWTEPHSRRLKVKL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007064Nmd3_N
IPR039768Nmd3