prot_Ecto-sp13_S_contig7137.18242.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7137.18242.1
Unique Nameprot_Ecto-sp13_S_contig7137.18242.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length112
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7137.18242.1 vs. uniprot
Match: D8LD85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD85_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 3.740e-25
Identity = 60/104 (57.69%), Postives = 66/104 (63.46%), Query Frame = 0 
Query:    1 MVSLMSSRKSAMMWRWHHPXXXXXXXXXXXXST--KKRRPK-CSFALLLLLAESLRCDSARACEEAILQVLNLGSNERSGPFPSSLGVRRALQLVLLNGHYYHP 101
            MV L+SS K+AM WRWHHP            +   K RRPK   F  +   +ESLRCDS +A   AILQVLNL SNERSGP PSSLGV RALQLVLLN H   P
Sbjct:    1 MVGLVSSGKNAMTWRWHHPMAHNSTTTTPTATAIDKTRRPKYIIFVRVAAPSESLRCDSTQAGGVAILQVLNLRSNERSGPIPSSLGVGRALQLVLLNSHQLSP 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7137.18242.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD85_ECTSI3.740e-2557.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 49..53
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 40..48
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 54..111
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7137contigEcto-sp13_S_contig7137:3005..4258 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7137.18242.1mRNA_Ecto-sp13_S_contig7137.18242.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7137 1201..4258 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7137.18242.1 ID=prot_Ecto-sp13_S_contig7137.18242.1|Name=mRNA_Ecto-sp13_S_contig7137.18242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MVSLMSSRKSAMMWRWHHPPAHNSSSSLSTPSTKKRRPKCSFALLLLLAE
SLRCDSARACEEAILQVLNLGSNERSGPFPSSLGVRRALQLVLLNGHYYH
PLFQVPFHISW*
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