mRNA_Ecto-sp13_S_contig7137.18242.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7137.18242.1
Unique NamemRNA_Ecto-sp13_S_contig7137.18242.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7137.18242.1 vs. uniprot
Match: D8LD85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD85_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 9.240e-25
Identity = 60/104 (57.69%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:    1 MVSLMSSRKSAMMWRWHHPXXXXXXXXXXXXST--KKRRPK-CSFALLLLLAESLRCDSARACEEAILQVLNLGSNERSGPFPSSLGVRRALQLVLLNGHYYHP 303
            MV L+SS K+AM WRWHHP            +   K RRPK   F  +   +ESLRCDS +A   AILQVLNL SNERSGP PSSLGV RALQLVLLN H   P
Sbjct:    1 MVGLVSSGKNAMTWRWHHPMAHNSTTTTPTATAIDKTRRPKYIIFVRVAAPSESLRCDSTQAGGVAILQVLNLRSNERSGPIPSSLGVGRALQLVLLNSHQLSP 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7137.18242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD85_ECTSI9.240e-2557.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7137contigEcto-sp13_S_contig7137:1201..4258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size443
Hectar predicted targeting categorymitochondrion
Exons3
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463979.2119079-UTR-Ecto-sp13_S_contig7137:1200..12591681463979.2119079-UTR-Ecto-sp13_S_contig7137:1200..1259Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7137 1201..1259 -
1681463979.2233224-UTR-Ecto-sp13_S_contig7137:2956..30041681463979.2233224-UTR-Ecto-sp13_S_contig7137:2956..3004Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7137 2957..3004 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463979.2550738-CDS-Ecto-sp13_S_contig7137:3004..31111681463979.2550738-CDS-Ecto-sp13_S_contig7137:3004..3111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7137 3005..3111 -
1681463979.2733223-CDS-Ecto-sp13_S_contig7137:4029..42581681463979.2733223-CDS-Ecto-sp13_S_contig7137:4029..4258Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7137 4030..4258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7137.18242.1prot_Ecto-sp13_S_contig7137.18242.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7137 3005..4258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7137.18242.1

>prot_Ecto-sp13_S_contig7137.18242.1 ID=prot_Ecto-sp13_S_contig7137.18242.1|Name=mRNA_Ecto-sp13_S_contig7137.18242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MVSLMSSRKSAMMWRWHHPPAHNSSSSLSTPSTKKRRPKCSFALLLLLAE
SLRCDSARACEEAILQVLNLGSNERSGPFPSSLGVRRALQLVLLNGHYYH
PLFQVPFHISW*
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mRNA from alignment at Ecto-sp13_S_contig7137:1201..4258-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7137.18242.1 ID=mRNA_Ecto-sp13_S_contig7137.18242.1|Name=mRNA_Ecto-sp13_S_contig7137.18242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3058bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7137:1201..4258- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCAGCTTGATGAGCTCCAGGAAGAGCGCAATGATGTGGCGATGGCA
CCACCCACCGGCACACAATAGCAGCAGCAGCTTGTCAACACCATCGACCA
AGAAAAGACGACCGAAATGCTCGTTCGCGTTGCTACTGCTGCTGGCTGAA
TCCCTCAGGTGCGATTCCGCCCGAGCCTGTGAAGAAGCGATTTTACAAGT
TCTCAACCTCGGCAGTAACGAACGCTCCGGTAAGATGTTGCGGCTGCCGT
TCTTAAAGGAAGATCGTCTCACTAGCGGTGTGAATACTAGGACCAATGGA
GCCGAAATCCATTCCGCCGTCTTGTTCGGTTTAACGCGCCGGGGTTATTC
GGAGTTCGCTTATCCACGTGTTGCGATTTTTCTTGCTTCCCGTGACACCA
ATGTCGTGCGTGACGTACAGTAGGCCCCGCCTAACGCACCGCGATGCTGG
GGAAACGCAATTTTTTTGTTCCAACCCTATGAGGATTTGACAGGTTGCAC
GTTGCATACCCTAGGCCGACAACTCGTGTTTCTCTTGGGTCGGAGTTGGC
GAAGACCATGATTCAACCTAGGATTCTTGGACAAACGTGTTTCCGCCCTC
TAGTATGTGTACGTTTGCGGGGCCGTGGAACCTGTTCGCACTAAGTGCGG
ATCTCTATGATTTTCGGCATGCGCCAACGCGAGTGCTACATTTCGCATTC
CTCGCATCTCATGTGGTAGGTTGCTCGTTGCGTTGTCCTGTGAACATTTG
TGCCGGGAAACGGCACAAAGGAAGATGGGCAGCGGGAGAGGTTCCTGAAT
GGGCATGGGAATGCGATCTGAAATTAGGCTTGAAATTGTTTCACAATGTG
CATGGATGAAGCGCTGCATCATTGTATTTCTAATGCGTCCAATGTCACGT
TCAGCGATAGCAATCCGTGTTCAACATCGTGACTCGTTTCGCGGTTGGCC
GTTTCGGGTACCGTGTCTTTTCAGCCTTGTTGTGAGCCGAGAGACCTTGG
TGCCTTGGCACGGTCTGACGGATATCGCCCGCGTGACAGATGTGACGATC
CTACCATAGCACTATCAAAACATGCCCGGACGGTAAGCACTACCGCATCG
CACGTTCCTAAACGTTGCCCGCTTCTACTCTGGGTGTTTCGATTCAGGGC
CTTTTCCTTCGTCGCTGGGAGTACGGCGAGCTCTGCAGCTGGTACTCCTC
AACGGCCACTACTATCACCCACTCTTTCAAGTGCCATTCCATATCAGCTG
GTAACCCTGATGGCGTGACAGAAGCTTCGTCTTGAGCAGAACCAGCTTAC
CGGTGAGAGGGAATCGGTCCTGCCTTCGCTAGTAAGACGAGGGTTCAGGA
AAACGTAGAGTTTTTGCCAGAGCTTCTCGTTAGTGTTTCCTTTGTTTTCA
AGGCCTCCTGAAGTAACGGCCGTAGTGCTGGTATCCTGGGCGTCCTTCAA
CCGCACCCGCTAGCTGAGATCCCCGCTGGTCATCGAAACCTGTTGTGATG
GTGCCTGTAGGACTGGTACGCCGTATCAGCCGCTCATGATTGCCGACGTC
TTCGTGCCAGAATGTTTTCACGCGATACTTGGGTAACGGTCGTCTTTATC
ACCTCATGGTTGGACGAGGTGGCGACACACCACCGCTTCTTTTTTAACTT
GGGTACTTATGTTAATGGGGGGCGCGGCATCGGGAAGTGAACCAACGAGA
GGCGCACGCCACAATCGCCAAGGCGAAAATGCGAGCCCAGACCAAAGTTG
ATCCCACGGGTAGTTACAAGCGTTGCCAGGGTTTCTGATCTAAATTGGCG
AGTCAGCTTTGCAATATCTAGCACAACCCGTGCAGATGACTCCACCCCAC
GCCCAATATATCGTGACGACAGTGAACGAGTGGTGAGATACATTTTTTTA
TTGATACCCGTTGAAGATGCACTCCAACGACGTTCCCAGTTGCACCAAAA
TCCACCACGGAATATGGATATCGTCAAGGGGCCGGGCCATAGACGTTGTG
ATGGCCACGGTGGTTGCTACAAGATAAAGAAAACCTTGTTGTGAGAATTC
TGGTTACCCTGGAGTTGGCCCTGATGTAATTTCAAGACAAGAATGTCCCT
ACCTTGCGGAGAATGTGCGGTGGGTCCTGGACTACACGTGAAGACCTAGC
GCCTGTCGCATTTGAGACTTTTCGAAGCCGATAGGCCGGAAGAGCCAGGG
TGGCGGCCTCGGTAGGCCCGCCATCGGCACCTACAAGCTGAAATACGTTT
GCCATTTGTCAGCCTTTCCGGACATTTCTGCCGTTGATGTGGATACTGGT
AAATAGCCAGGCTAGTGCTGAAGTGTGTAGTTGTATGGGGTTTGGATGCA
ACGGGTGAACGAGACGATGCCAAAAGTAGGCTGGTTCAACACGAAAAAAG
CGGTGATTCGCGAAACCGATGGTGGGGTCATTTGCGTTGTGAATAGAATA
TTACCTCCCACATGAGAACCAATATCGCGCGCGGTTGCAAGCTGACCCCC
TCGGCAATATCGTATCGGTCCCCAGGCGCGGGGGCCCGAACAATGAACGT
TAGCATTCGGCAGGACAAAAGCATCGATTCACGTCTTAGCCGATTGGACT
ATGTGACCCCCACACGTTCCGCTGGCCTCATCGACTGAACCAAGCATATC
GGAAGCAACCTTCCGCCACAGTCACAAATCTGAAAACGTCGTCATGCACG
TGCTGCAGAAATATTTGGTGTACCTCTCGATCACACTTTTGCGCTCCAGT
TCCATTGGTGGGTCGGTCGTTCGAGCTCGATTCCACACACCAAAGTCGTT
CGTGAAAGTTGCTTCTGGTTCCAGAAATTTGCTGTGACTTGCAGCATCGA
AGAGGTGCTGACCGGATAATATCTCCCATCTACATGGGGATGTCGATGAG
AATACCTCCTCGAGCCAGGCCAATTCAGCGGCACTGTTGCTAAGGCGCGC
TCGGTCGCGCATGCTATCGCCAACACCCTCGGGTTTCGTTCCTTCACAGC
TGGGCAGGCTTGTGGTGCTACAGGAGCTACAGCATCTAGGCGAGAACTAA
CACCCCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7137:1201..4258-

>mRNA_Ecto-sp13_S_contig7137.18242.1 ID=mRNA_Ecto-sp13_S_contig7137.18242.1|Name=mRNA_Ecto-sp13_S_contig7137.18242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7137:1201..4258- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCAGCTTGATGAGCTCCAGGAAGAGCGCAATGATGTGGCGATGGCA
CCACCCACCGGCACACAATAGCAGCAGCAGCTTGTCAACACCATCGACCA
AGAAAAGACGACCGAAATGCTCGTTCGCGTTGCTACTGCTGCTGGCTGAA
TCCCTCAGGTGCGATTCCGCCCGAGCCTGTGAAGAAGCGATTTTACAAGT
TCTCAACCTCGGCAGTAACGAACGCTCCGGGCCTTTTCCTTCGTCGCTGG
GAGTACGGCGAGCTCTGCAGCTGGTACTCCTCAACGGCCACTACTATCAC
CCACTCTTTCAAGTGCCATTCCATATCAGCTGGTAA
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