mRNA_Ecto-sp13_S_contig71347.18240.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig71347.18240.1
Unique NamemRNA_Ecto-sp13_S_contig71347.18240.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig71347.18240.1 vs. uniprot
Match: D7FVI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI4_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 1.800e-71
Identity = 126/140 (90.00%), Postives = 127/140 (90.71%), Query Frame = 1 
Query:    1 TSTNNTAPASETMPPPSTPXPSARDTLENNPLIDEDDILRHLIPFVADNEGYLFVAGVASTWYKAWVGGQLPKNTCLGNVVESASRLAWASSRLSTGGGTSXXXXXXASDPWVWDESVCRRAAAGGHLGALKYARKQGCP 420
            TS N  APASETMPP   P  SA+DTLENNPLIDEDDILRHLIPFVADNEGYLFVAGVASTWYKAWVGGQLPKNTCLGNVVESASRLAWASSRL TGG   XXXXXXAS PWVWDESVCRRAAAGGHLGALKYARKQGCP
Sbjct:    5 TSNNKAAPASETMPP-MPPPASAQDTLENNPLIDEDDILRHLIPFVADNEGYLFVAGVASTWYKAWVGGQLPKNTCLGNVVESASRLAWASSRLGTGGXXXXXXXXXASTPWVWDESVCRRAAAGGHLGALKYARKQGCP 143
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BLAST of mRNA_Ecto-sp13_S_contig71347.18240.1 vs. uniprot
Match: A0A6H5JXW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXW6_9PHAE)

HSP 1 Score: 231 bits (590), Expect = 3.020e-71
Identity = 122/141 (86.52%), Postives = 124/141 (87.94%), Query Frame = 1 
Query:    1 TSTNNTAPASETMPPPSTPXP-SARDTLENNPLIDEDDILRHLIPFVADNEGYLFVAGVASTWYKAWVGGQLPKNTCLGNVVESASRLAWASSRLSTGGGTSXXXXXXASDPWVWDESVCRRAAAGGHLGALKYARKQGCP 420
            TS N  APASETMPP    X  SA+DTLENNPLIDEDDILRHLIPFVADNEGYLFVAGVASTWY+AWVGGQLPKNTCLGNVVESASRLAWASSRLSTGG TS      AS PWVWDESVCRRAAAGGHLGALKYARKQGCP
Sbjct:    5 TSKNKAAPASETMPPTXXXXXASAQDTLENNPLIDEDDILRHLIPFVADNEGYLFVAGVASTWYRAWVGGQLPKNTCLGNVVESASRLAWASSRLSTGGSTSGG----ASTPWVWDESVCRRAAAGGHLGALKYARKQGCP 141
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BLAST of mRNA_Ecto-sp13_S_contig71347.18240.1 vs. uniprot
Match: A0A6H5KXW1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXW1_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.530e-14
Identity = 54/111 (48.65%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:   88 NPLIDEDDILRHLIPFVADNEGYLFVAGVASTWYKAWVGGQLPKNTCLGNVVESASRLAWASSRLSTGGGTSXXXXXXASDPWVWDESVCRRAAAGGHLGALKYARKQGCP 420
            NPL D   ILRHLI F A N G+LFVAGV+ +W  AW G + P  T +   V+S SRL WA  R S  G               W  SVC RAA+GGHL  L+YAR  GCP
Sbjct:  726 NPLADPT-ILRHLISFAARN-GFLFVAGVSRSWRDAW-GVERPPETEVDAAVQSPSRLGWA--RASGLG---------------WGPSVCARAASGGHLATLRYARALGCP 816
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71347.18240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVI4_ECTSI1.800e-7190.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXW6_9PHAE3.020e-7186.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXW1_9PHAE1.530e-1448.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71347contigEcto-sp13_S_contig71347:30..689 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score240.7
Seed ortholog evalue6.3e-61
Seed eggNOG ortholog2880.D7FVI4
Model size660
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionAnkyrin-repeat protein similar to EsV-1-2
Ec32 orthologEc-05_005960.1
Cds size660
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463979.1061115-CDS-Ecto-sp13_S_contig71347:29..6891681463979.1061115-CDS-Ecto-sp13_S_contig71347:29..689Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71347 30..689 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71347.18240.1prot_Ecto-sp13_S_contig71347.18240.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig71347 30..689 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig71347.18240.1

>prot_Ecto-sp13_S_contig71347.18240.1 ID=prot_Ecto-sp13_S_contig71347.18240.1|Name=mRNA_Ecto-sp13_S_contig71347.18240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=220bp
TSTNNTAPASETMPPPSTPPPSARDTLENNPLIDEDDILRHLIPFVADNE
GYLFVAGVASTWYKAWVGGQLPKNTCLGNVVESASRLAWASSRLSTGGGT
SGGAGGGASDPWVWDESVCRRAAAGGHLGALKYARKQGCPWDATCTREAA
AGGHLSLLRWAHANGCEWDASTPACAARYGDLDTLRFVRRNGCPWDKTTC
SEAARGGHLEILKWARSKVC
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mRNA from alignment at Ecto-sp13_S_contig71347:30..689-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig71347.18240.1 ID=mRNA_Ecto-sp13_S_contig71347.18240.1|Name=mRNA_Ecto-sp13_S_contig71347.18240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71347:30..689- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCTCTACCAACAACACCGCTCCCGCTTCCGAGACCATGCCGCCGCCGTC
GACGCCGCCGCCGTCGGCTCGGGACACCTTAGAGAACAACCCCCTCATCG
ACGAGGACGACATCCTCCGGCACCTCATTCCCTTCGTCGCTGACAACGAG
GGATACCTCTTCGTGGCCGGCGTCGCCTCGACTTGGTACAAGGCTTGGGT
CGGAGGACAGCTCCCGAAAAACACGTGCCTCGGAAACGTCGTCGAATCTG
CGTCTCGCCTGGCGTGGGCCAGCAGCAGGCTCAGCACCGGCGGCGGCACC
AGCGGCGGTGCCGGCGGCGGAGCCAGCGACCCGTGGGTGTGGGATGAGAG
CGTTTGCAGGAGAGCCGCCGCTGGAGGGCACCTGGGCGCTCTCAAGTACG
CACGGAAGCAGGGCTGTCCTTGGGACGCAACTTGCACCCGCGAGGCGGCG
GCGGGGGGACACCTCTCGCTGCTGCGCTGGGCGCACGCCAACGGGTGCGA
GTGGGACGCCTCCACCCCGGCGTGCGCGGCCAGGTACGGCGACCTCGACA
CGCTCCGGTTCGTCAGGAGGAACGGGTGCCCGTGGGACAAGACTACCTGT
TCCGAGGCGGCGCGTGGTGGACACCTGGAAATTCTTAAGTGGGCGAGATC
CAAGGTGTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71347:30..689-

>mRNA_Ecto-sp13_S_contig71347.18240.1 ID=mRNA_Ecto-sp13_S_contig71347.18240.1|Name=mRNA_Ecto-sp13_S_contig71347.18240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71347:30..689- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCTCTACCAACAACACCGCTCCCGCTTCCGAGACCATGCCGCCGCCGTC
GACGCCGCCGCCGTCGGCTCGGGACACCTTAGAGAACAACCCCCTCATCG
ACGAGGACGACATCCTCCGGCACCTCATTCCCTTCGTCGCTGACAACGAG
GGATACCTCTTCGTGGCCGGCGTCGCCTCGACTTGGTACAAGGCTTGGGT
CGGAGGACAGCTCCCGAAAAACACGTGCCTCGGAAACGTCGTCGAATCTG
CGTCTCGCCTGGCGTGGGCCAGCAGCAGGCTCAGCACCGGCGGCGGCACC
AGCGGCGGTGCCGGCGGCGGAGCCAGCGACCCGTGGGTGTGGGATGAGAG
CGTTTGCAGGAGAGCCGCCGCTGGAGGGCACCTGGGCGCTCTCAAGTACG
CACGGAAGCAGGGCTGTCCTTGGGACGCAACTTGCACCCGCGAGGCGGCG
GCGGGGGGACACCTCTCGCTGCTGCGCTGGGCGCACGCCAACGGGTGCGA
GTGGGACGCCTCCACCCCGGCGTGCGCGGCCAGGTACGGCGACCTCGACA
CGCTCCGGTTCGTCAGGAGGAACGGGTGCCCGTGGGACAAGACTACCTGT
TCCGAGGCGGCGCGTGGTGGACACCTGGAAATTCTTAAGTGGGCGAGATC
CAAGGTGTGT
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