mRNA_Ecto-sp13_S_contig7134.18239.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7134.18239.1 vs. uniprot
Match: D7FXK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK6_ECTSI) HSP 1 Score: 532 bits (1371), Expect = 4.950e-186 Identity = 256/288 (88.89%), Postives = 266/288 (92.36%), Query Frame = 1
Query: 1 RMKVLWTLLLGAAPVAFAEDSTAAEWLGDHSIQGDGLVTETGGFLQRKVSKND---SHRGPRSSPKSRPSRKRNNDGVKAEFSLEYEHIGCFADKKTDRVLEHVMKSPLMTSAMCAEHCFGRRATYMALQYGYECWCSRYTELDYSRHSRTAGTDKSDADLCDLNCYGYNAETCGGFYAFDLYKLNGPMPSDSREYVGCFADDQGDRALANEIKFQDNMTQAVCRVYCERFGSSFYATQYGDECWCGATNDVEEYKRHGDGECVAGCFGEPAIACGGYYAFSLFEYLD 855
RMKVLWTLLLGAAPVAFAEDSTAA WLGDHSIQG+GLV ETG LQRKVSK + SH G RSS KSRP RKRNNDGVKAEFSLEYEHIGCFAD KTDRVL H+MKSPLMTSAMCAEHCFGRRATYMALQYGYECWCSRYTELDYSRHS GTDK DADLCDL+CYG +AETCGG YAFDLYKL+GPMPSDSREYVGCFADDQ DRALAN+IKFQDNMTQ VCRVYCERFGSSFYATQYGDECWCGAT+DVEEYKRHGDGEC+AGCFG+PAIACGGYYAFSLFEYLD
Sbjct: 229 RMKVLWTLLLGAAPVAFAEDSTAAVWLGDHSIQGEGLVAETGSSLQRKVSKKNEGPSHHGARSSRKSRPCRKRNNDGVKAEFSLEYEHIGCFADNKTDRVLGHLMKSPLMTSAMCAEHCFGRRATYMALQYGYECWCSRYTELDYSRHS---GTDKGDADLCDLSCYGCDAETCGGLYAFDLYKLDGPMPSDSREYVGCFADDQEDRALANKIKFQDNMTQDVCRVYCERFGSSFYATQYGDECWCGATDDVEEYKRHGDGECIAGCFGDPAIACGGYYAFSLFEYLD 513
BLAST of mRNA_Ecto-sp13_S_contig7134.18239.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI) HSP 1 Score: 258 bits (659), Expect = 3.970e-76 Identity = 117/201 (58.21%), Postives = 142/201 (70.65%), Query Frame = 1
Query: 247 YEHIGCFADKKTDRVLEHVMKSPLMTSAMCAEHCFGRRATYMALQYGYECWCSRYTELDYSRHSRTAGTDKSDADLCDLNCYGYNAETCGGFYAFDLYKLNGPMPSDSREYVGCFADDQGDRALANEIKFQDNMTQAVCRVYCERFGSSFYATQYGDECWCGATNDVEEYKRHGDGECVAGCFGEPAIACGGYYAFSLFEY 849
Y ++GCFAD K DRV E++ S MT+A+C E+C RRATYMA QYGYECWCS E++Y RHS +CD C G A+ CGGF AFDLYK+ P EYVGCFADD+ DR L +EIK Q +MTQAVCR YCE + FYATQYGDECWCG +ND E+YKRHG G C+AGC G+P +ACGG+ AF+LF++
Sbjct: 433 YSYVGCFADSKEDRVFEYMKTSSTMTTAVCLEYCLDRRATYMATQYGYECWCSVDAEVEYDRHSD---------GVCDHACGGDAADICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQAVCRTYCEERDAYFYATQYGDECWCGMSNDEEDYKRHGRGSCLAGCSGDPTVACGGFDAFNLFKF 624
BLAST of mRNA_Ecto-sp13_S_contig7134.18239.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE) HSP 1 Score: 239 bits (611), Expect = 1.520e-72 Identity = 106/191 (55.50%), Postives = 130/191 (68.06%), Query Frame = 1
Query: 247 YEHIGCFADKKTDRVLEHVMKSPLMTSAMCAEHCFGRRATYMALQYGYECWCSRYTELDYSRHSRTAGTDKSDADLCDLNCYGYNAETCGGFYAFDLYKLNGPMPSDSREYVGCFADDQGDRALANEIKFQDNMTQAVCRVYCERFGSSFYATQYGDECWCGATNDVEEYKRHGDGECVAGCFGEPAIACG 819
Y ++GCFAD K DRV E++ SP MT+A+C E+C RRAT+MA Q+G ECWCS E++Y RHS +CD C G + CGGF AFDLYK+ P EYVGCFADD+ DR L +EIK Q +MTQ VCR YCE + FYATQYGDECWCG + D ++YKRHG G C+AGC G+P +ACG
Sbjct: 11 YSYVGCFADSKDDRVFEYMKTSPTMTTAVCLEYCLDRRATFMATQFGIECWCSVDAEIEYDRHSD---------GVCDCECGGEATDICGGFDAFDLYKITEPTEPTGDEYVGCFADDREDRLLGDEIKLQPDMTQTVCRTYCEERDAYFYATQYGDECWCGMSEDEQDYKRHGRGSCLAGCSGDPTVACG 192
BLAST of mRNA_Ecto-sp13_S_contig7134.18239.1 vs. uniprot
Match: A0A6H5JN72_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN72_9PHAE) HSP 1 Score: 243 bits (620), Expect = 4.120e-72 Identity = 117/217 (53.92%), Postives = 140/217 (64.52%), Query Frame = 1
Query: 247 YEHIGCFADKKTDRVLEHVMKSPLMTSAMCAEHCFGRRATYMALQYGYECWCSRYTELDYSRHSRTAG-TDKSDADLCDLNCYGYNAE----TCGGFYAFD------------LYKLNGPMPSDSREYVGCFADDQGDRALANEIKFQDNMTQAVCRVYCERFGSSFYATQYGDECWCGATNDVEEYKRHGDGECVAGCFGEPAIACGGYYAFSLFE 846
Y H+GCF+D K DRVLE ++ S MT AMC EHC RRATYMA QYG+ECWCS ++LDY+RHS D D LC C G +C A + LYK+ P + EYVGCFADD DR L NEIK+Q +MTQAVCR YCE FG+ FYATQYGDECWCG ++D E+YKRHG G CVA C G+P ACGG+ +F+LF+
Sbjct: 451 YTHVGCFSDNKEDRVLEAMITSSAMTGAMCYEHCVDRRATYMATQYGFECWCSHDSDLDYARHSDDLERVDGRDYGLCGTRCEGDKVRILHGSCRQREALENHAMGEIRNLHYLYKITEPTEPEGEEYVGCFADDGDDRLLKNEIKYQPDMTQAVCRTYCEGFGAHFYATQYGDECWCGTSDDKEDYKRHGHGSCVAQCSGDPTTACGGFDSFNLFK 667
BLAST of mRNA_Ecto-sp13_S_contig7134.18239.1 vs. uniprot
Match: D8LED9_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED9_ECTSI) HSP 1 Score: 235 bits (599), Expect = 1.110e-69 Identity = 109/201 (54.23%), Postives = 135/201 (67.16%), Query Frame = 1
Query: 247 YEHIGCFADKKTDRVLEHVMKSPLMTSAMCAEHCFGRRATYMALQYGYECWCSRYTELDYSRHSRTAGTDKSDADLCDLNCYGYNAETCGGFYAFDLYKLNGPMPSDSREYVGCFADDQGDRALANEIKFQDNMTQAVCRVYCERFGSSFYATQYGDECWCGATNDVEEYKRHGDGECVAGCFGEPAIACGGYYAFSLFEY 849
Y ++GCFAD K DRV E++ S MT+A+C E+C RRATYMA QYG ECWCS E +Y RHS +CD C G A+ CGGF AFDLYK+ P EYVGCFAD+ D L EIK Q +MTQAVCR YCE ++FYATQ G+ECWCG + + E+Y R G G C+AGC G+PA+ACGG+ AF+LF++
Sbjct: 400 YSYVGCFADNKHDRVFEYMRTSFTMTTAVCLEYCLERRATYMATQYGIECWCSVDAETEYDRHSD---------GVCDHACGGDEADYCGGFDAFDLYKITEPREPTGDEYVGCFADNPEDWVLGGEIKSQPDMTQAVCRTYCEDLDANFYATQNGEECWCGMSEEEEDYTRSGRGSCLAGCSGDPAVACGGFNAFNLFKF 591
BLAST of mRNA_Ecto-sp13_S_contig7134.18239.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI) HSP 1 Score: 203 bits (517), Expect = 1.170e-55 Identity = 97/203 (47.78%), Postives = 132/203 (65.02%), Query Frame = 1
Query: 247 YEHIGCFADKKTDRVLEHV-MKSPLMTSAMCAEHCFGRRATYMALQYGYECWCSRYTELDYSRHSRTAGTDKSDADLCDLNCYGYNAETCGGFYAFDLYKLN-GPMPSDSREYVGCFADDQGDRALANEIKFQDNMTQAVCRVYCERFGSSFYATQYGDECWCGATNDVEEYKRHGDGECVAGCFGEPAIACGGYYAFSLFEY 849
YEH+GCF D ++DRVL+ + S MT+ +C E C + A YMA Q+G ECWCSR LDY RH D +CD C G +ETCGG ++F+LY+L+ P P D EYVGC+ D++GDR L++ I D+MT AVCR +C + +Y TQ+ ECWCG ++D +Y+RHG+G C C G+ +ACGGY A+SLF+Y
Sbjct: 1145 YEHVGCFQDSQSDRVLQRSGLISGDMTAELCYETCSTKGAAYMATQWGVECWCSRDGSLDYDRHG--------DTGVCDYPCRGDESETCGGVHSFNLYRLSWAPAPEDE-EYVGCYTDNKGDRVLSDMIS-SDDMTAAVCREHCADKDAPYYGTQFSSECWCGTSDDDADYERHGEGVCHMACSGDGTVACGGYDAYSLFKY 1337
BLAST of mRNA_Ecto-sp13_S_contig7134.18239.1 vs. uniprot
Match: A0A6H5JLD0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD0_9PHAE) HSP 1 Score: 184 bits (466), Expect = 2.480e-54 Identity = 96/203 (47.29%), Postives = 116/203 (57.14%), Query Frame = 1
Query: 304 MKSPLMTSAMCAEHCFGRRATYMALQYGYECWCSRYTELDYSRHSRTAGTDKSDADLCDLNCYGYNAETCGGFYAF---------------DLYKLNGPMPSDSR----EYVGCFADDQGDRALANEIKFQDNMTQAVCRVYCERFGSSFYATQYGDECWCGATNDVEEYKRHGDGECVAGCFGEPAIACGGYYAFSLFEYLD 855
M+ L + MC EHC A YMA Q+G+EC CS +LDY+RHS GTD LC C G T + DLYK+ P + EYVGCFADD DR L NEIK Q +MTQ VCRVYCE + + FYATQYGDECWCG +ND E+YKRHG G C+ C G+ A CGG+ AF+L++ D
Sbjct: 1 MRVFLCRTQMCYEHCHSEGAAYMATQFGFECLCSHDADLDYARHSE--GTD----GLCMTECEGDTLPTSTSWRGRSSRRNVCLELALLFPDLYKIAEPKEVEXXXXXXEYVGCFADDPEDRLLGNEIKHQPDMTQVVCRVYCEGYDAQFYATQYGDECWCGMSNDEEDYKRHGSGSCLMECSGDSATVCGGFNAFNLYKNKD 197
BLAST of mRNA_Ecto-sp13_S_contig7134.18239.1 vs. uniprot
Match: D8LED5_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED5_ECTSI) HSP 1 Score: 190 bits (482), Expect = 9.480e-54 Identity = 95/182 (52.20%), Postives = 113/182 (62.09%), Query Frame = 1
Query: 331 MCAEHCFGRRATYMALQYGYECWCSRYTELDYSRHSRTAGTDKSDADLCDLNCYGYNAETCGGFYAFDLYK-------LNGPMPSDSREYVGCFADDQGDRALANEIKFQDNMTQAVCRVYCERFGSSFYATQYGDECWCGATNDVEEYKRHGDGECVAGCFGEPAIACGGYYAFSLFEYLD 855
MC EHC+ A YMA Q+G+ECWCS T+LDYSRHS D D LC C G +TC A D L + EYVGCFADD DR L NEIK+Q +MTQAVCR YCE + + FYATQYGDECWCG +ND E+YKRHG G C+ C G+P CGG AF+L++ +D
Sbjct: 276 MCYEHCYSEGAAYMATQFGFECWCSDDTDLDYSRHSDNI--DGGDG-LCTTACQG---DTCWRERALDACAVLVDRRALLVEEGDEVDEYVGCFADDPEDRLLGNEIKYQPDMTQAVCRTYCEGYDAHFYATQYGDECWCGMSNDEEDYKRHGSGSCLMECSGDPGTVCGGNDAFNLYKNMD 451
BLAST of mRNA_Ecto-sp13_S_contig7134.18239.1 vs. uniprot
Match: D8LGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI) HSP 1 Score: 161 bits (407), Expect = 1.930e-42 Identity = 80/202 (39.60%), Postives = 113/202 (55.94%), Query Frame = 1
Query: 247 YEHIGCFADKKTDRVLEHV-MKSPLMTSAMCAEHCFGRRATYMALQYGYECWCSRYTELDYSRHSRTAGTDKSDADLCDLNCYGYNAETCGGFYAFDLYKLNGPMPSDSREYVGCFADDQGDRALANEIKFQDNMTQAVCRVYCERFGSSFYATQYGDECWCGATNDVEEYKRHGDGECVAGCFGEPAIACGGYYAFSLFEY 849
YEH+GC+ D H+ + MT+ MC + C + +M Q G EC CSR +L YS D +CD+ C G + ETCGG DLYKL D EYVGC++D R + ++ + MT +CR +CE + +YATQYG+EC+CG ++D E+Y+ HG G C C G+ ACGGY+AFSL+++
Sbjct: 44 YEHVGCYVDNGMVNARPHLPLVMETMTNEMCYDRCHELGSFFMGTQKGNECRCSREEDLAYSAF---------DFGVCDIPCAGDSDETCGGQLTIDLYKLTAAQTPDHEEYVGCWSDANESRVM-EDMLVDEGMTTDMCRDHCESSDAVYYATQYGNECFCGYSSDPEDYETHGLGTCHMHCGGDSGSACGGYWAFSLYQF 235
BLAST of mRNA_Ecto-sp13_S_contig7134.18239.1 vs. uniprot
Match: D7FQI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI3_ECTSI) HSP 1 Score: 163 bits (412), Expect = 1.170e-41 Identity = 89/207 (43.00%), Postives = 115/207 (55.56%), Query Frame = 1
Query: 253 HIGCFADKKTDRVLEHVMKSPLMTSAMCAEHCFGRRA--TYMALQYGYECWCSRYTELDYSRHSRTAGTDKSDADLCDLNCYGYNAETCGGFYAFDLYKLNGPMPSDSRE--YVGCFADDQGDRALANEIKFQDNMTQAVCRVYCERFGSSFYATQYGDECWCGAT----NDVEEYKRHGDGECVA-GCFGEPAIACGGYYAFSLFE 846
++GCFAD K DRVL M S MT +CA +C TY A Q+G ECWC+R ++DYSRH + CD C G + TCGG+ AFDL+KL S E Y+GCFADD+GDR L ++I D MT C +C F+A Q+G ECWCG +D++ Y RHG C C G+ + CGGY +FSL+
Sbjct: 182 YVGCFADDKEDRVLGSKMSSGSMTPEVCAAYCADDSPSHTYYATQWGRECWCAR--DVDYSRHGEGS---------CDYTCTGDSGTTCGGYDAFDLFKLEEDSLSPPSEDYYLGCFADDKGDRVLEDKISASD-MTLETCEEHCTALDKPFFALQWGKECWCGGCELQDDDLDRYDRHGIASCTDYPCTGDGSRQCGGYDSFSLYN 376 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7134.18239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7134.18239.1 >prot_Ecto-sp13_S_contig7134.18239.1 ID=prot_Ecto-sp13_S_contig7134.18239.1|Name=mRNA_Ecto-sp13_S_contig7134.18239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=284bp MKVLWTLLLGAAPVAFAEDSTAAEWLGDHSIQGDGLVTETGGFLQRKVSKback to top mRNA from alignment at Ecto-sp13_S_contig7134:4..4061- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7134.18239.1 ID=mRNA_Ecto-sp13_S_contig7134.18239.1|Name=mRNA_Ecto-sp13_S_contig7134.18239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4058bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7134:4..4061- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7134:4..4061- >mRNA_Ecto-sp13_S_contig7134.18239.1 ID=mRNA_Ecto-sp13_S_contig7134.18239.1|Name=mRNA_Ecto-sp13_S_contig7134.18239.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=852bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7134:4..4061- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |