mRNA_Ecto-sp13_S_contig71191.18216.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: D8LHR8_ECTSI (CTLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR8_ECTSI) HSP 1 Score: 123 bits (309), Expect = 3.780e-31 Identity = 64/82 (78.05%), Postives = 66/82 (80.49%), Query Frame = 1
Query: 1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIV---------AVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNT G +IRRENHHLGSIFCLGFSPDSSLLATG +
Sbjct: 719 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTCGMDSDSPVQEWPSTEVIRRENHHLGSIFCLGFSPDSSLLATGSN 800
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: A0A8J1UHZ6_OWEFU (Ofus.G131431 protein n=3 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UHZ6_OWEFU) HSP 1 Score: 73.6 bits (179), Expect = 1.430e-13 Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
+R+V F +G L+AVG N +TLRVC P+ + L + T V+ +R HH GSI+CLG++P L+ATG +
Sbjct: 717 IRAVTFHPEGHLYAVGSNSKTLRVCSFPNVSNLKEDDEPTQTNVIFKRNKHHKGSIYCLGWNPGGDLIATGSN 789
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: UPI000B902878 (WD repeat-containing protein 47 isoform X2 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI000B902878) HSP 1 Score: 73.2 bits (178), Expect = 1.900e-13 Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
+R F G L+AVG N ++LR+C P L+ ++N VL +R HH GSI+CLG+SPD +LLATG +
Sbjct: 183 IRCAEFHPRGFLYAVGSNSKSLRICAYPDTKRLSKDSNPVQPNVLFKRNKHHRGSIYCLGWSPDGNLLATGSN 255
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: UPI001604FDB0 (WD repeat-containing protein 47 isoform X1 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI001604FDB0) HSP 1 Score: 73.2 bits (178), Expect = 1.900e-13 Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
+R F G L+AVG N ++LR+C P L+ ++N VL +R HH GSI+CLG+SPD +LLATG +
Sbjct: 196 IRCAEFHPRGFLYAVGSNSKSLRICAYPDTKRLSKDSNPVQPNVLFKRNKHHRGSIYCLGWSPDGNLLATGSN 268
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: UPI001198263E (WD repeat-containing protein 47 isoform X2 n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001198263E) HSP 1 Score: 72.8 bits (177), Expect = 2.630e-13 Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
VR F +G L+AVG N +TLR+C P ++ N+ T VL++R HH GSI+CL +SP+ LLATG +
Sbjct: 288 VRCAEFHPNGKLYAVGSNTKTLRICTYPKIEDVKDNSAPTAPTVLLKRTKHHKGSIYCLAWSPEGDLLATGSN 360
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: A0A094ZT64_SCHHA (WD repeat-containing protein 47 n=9 Tax=Schistosoma TaxID=6181 RepID=A0A094ZT64_SCHHA) HSP 1 Score: 72.8 bits (177), Expect = 2.670e-13 Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 1
Query: 1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
+R + F G L+AVG N + LRVC+ PS L++N T VL+RR+ +H GSI+C+ +SPD ++ATG +
Sbjct: 772 IRCIAFHPSGRLYAVGSNSKFLRVCQYPSLQHLSANHVATSPVVLMRRQKYHKGSIYCVAWSPDGRIIATGSN 844
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: A0A1D2MX29_ORCCI (WD repeat-containing protein 47 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MX29_ORCCI) HSP 1 Score: 72.4 bits (176), Expect = 3.600e-13 Identity = 35/73 (47.95%), Postives = 44/73 (60.27%), Query Frame = 1
Query: 1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
VR F G ++A+G N +TLRVC P EL N VL +R HH GSI+CLG+SPD +LLATG +
Sbjct: 373 VRCAEFHPAGRVYAIGSNSKTLRVCAYPDLNELTENHVSYQPTVLFKRTKHHKGSIYCLGWSPDGNLLATGSN 445
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: A0A226DWQ7_FOLCA (WD repeat-containing protein 47 n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DWQ7_FOLCA) HSP 1 Score: 72.0 bits (175), Expect = 4.940e-13 Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
+R F +G ++A+G N +TLRVC P +L+ + + VL +R HH GSI+C+G+SPD +LLATG +
Sbjct: 429 IRCAEFHPEGKVYAIGSNSKTLRVCSYPDLGDLSESHHPYQPTVLFKRTKHHKGSIYCMGWSPDGALLATGSN 501
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: A0A4Z2DH44_SCHJA (WD repeat-containing protein n=2 Tax=Schistosoma japonicum TaxID=6182 RepID=A0A4Z2DH44_SCHJA) HSP 1 Score: 72.0 bits (175), Expect = 4.990e-13 Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
+R + F G L+AVG N + LRVC+ P+ L+ N T VL+RR+ +H GSI+C+ +SPD L+ATG +
Sbjct: 774 IRCIAFHPSGRLYAVGSNSKFLRVCQYPNVQRLSPNHVATSPVVLMRRQKYHRGSIYCVAWSPDGRLIATGSN 846
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: A0A8J2J3C0_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2J3C0_9HEXA) HSP 1 Score: 71.2 bits (173), Expect = 9.240e-13 Identity = 33/73 (45.21%), Postives = 43/73 (58.90%), Query Frame = 1
Query: 1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
VR F G ++A+G N +TLRVC P +L N VL +R HH GSI+C+G+SPD LLATG +
Sbjct: 470 VRCAEFHPSGKVYAIGSNSKTLRVCAYPDLIDLTENHVAYQPTVLFKRTKHHKGSIYCMGWSPDGKLLATGSN 542 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig71191.18216.1 >prot_Ecto-sp13_S_contig71191.18216.1 ID=prot_Ecto-sp13_S_contig71191.18216.1|Name=mRNA_Ecto-sp13_S_contig71191.18216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENback to top mRNA from alignment at Ecto-sp13_S_contig71191:177..673- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig71191.18216.1 ID=mRNA_Ecto-sp13_S_contig71191.18216.1|Name=mRNA_Ecto-sp13_S_contig71191.18216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=497bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71191:177..673- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71191:177..673- >mRNA_Ecto-sp13_S_contig71191.18216.1 ID=mRNA_Ecto-sp13_S_contig71191.18216.1|Name=mRNA_Ecto-sp13_S_contig71191.18216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71191:177..673- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |