mRNA_Ecto-sp13_S_contig71191.18216.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig71191.18216.1
Unique NamemRNA_Ecto-sp13_S_contig71191.18216.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: D8LHR8_ECTSI (CTLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR8_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 3.780e-31
Identity = 64/82 (78.05%), Postives = 66/82 (80.49%), Query Frame = 1
Query:    1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIV---------AVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
            VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNT G              +IRRENHHLGSIFCLGFSPDSSLLATG +
Sbjct:  719 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTCGMDSDSPVQEWPSTEVIRRENHHLGSIFCLGFSPDSSLLATGSN 800          
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: A0A8J1UHZ6_OWEFU (Ofus.G131431 protein n=3 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UHZ6_OWEFU)

HSP 1 Score: 73.6 bits (179), Expect = 1.430e-13
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
            +R+V F  +G L+AVG N +TLRVC  P+ + L  +   T   V+ +R  HH GSI+CLG++P   L+ATG +
Sbjct:  717 IRAVTFHPEGHLYAVGSNSKTLRVCSFPNVSNLKEDDEPTQTNVIFKRNKHHKGSIYCLGWNPGGDLIATGSN 789          
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: UPI000B902878 (WD repeat-containing protein 47 isoform X2 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI000B902878)

HSP 1 Score: 73.2 bits (178), Expect = 1.900e-13
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
            +R   F   G L+AVG N ++LR+C  P    L+ ++N     VL +R  HH GSI+CLG+SPD +LLATG +
Sbjct:  183 IRCAEFHPRGFLYAVGSNSKSLRICAYPDTKRLSKDSNPVQPNVLFKRNKHHRGSIYCLGWSPDGNLLATGSN 255          
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: UPI001604FDB0 (WD repeat-containing protein 47 isoform X1 n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI001604FDB0)

HSP 1 Score: 73.2 bits (178), Expect = 1.900e-13
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
            +R   F   G L+AVG N ++LR+C  P    L+ ++N     VL +R  HH GSI+CLG+SPD +LLATG +
Sbjct:  196 IRCAEFHPRGFLYAVGSNSKSLRICAYPDTKRLSKDSNPVQPNVLFKRNKHHRGSIYCLGWSPDGNLLATGSN 268          
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: UPI001198263E (WD repeat-containing protein 47 isoform X2 n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001198263E)

HSP 1 Score: 72.8 bits (177), Expect = 2.630e-13
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
            VR   F  +G L+AVG N +TLR+C  P   ++  N+  T   VL++R  HH GSI+CL +SP+  LLATG +
Sbjct:  288 VRCAEFHPNGKLYAVGSNTKTLRICTYPKIEDVKDNSAPTAPTVLLKRTKHHKGSIYCLAWSPEGDLLATGSN 360          
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: A0A094ZT64_SCHHA (WD repeat-containing protein 47 n=9 Tax=Schistosoma TaxID=6181 RepID=A0A094ZT64_SCHHA)

HSP 1 Score: 72.8 bits (177), Expect = 2.670e-13
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
            +R + F   G L+AVG N + LRVC+ PS   L++N   T   VL+RR+ +H GSI+C+ +SPD  ++ATG +
Sbjct:  772 IRCIAFHPSGRLYAVGSNSKFLRVCQYPSLQHLSANHVATSPVVLMRRQKYHKGSIYCVAWSPDGRIIATGSN 844          
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: A0A1D2MX29_ORCCI (WD repeat-containing protein 47 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MX29_ORCCI)

HSP 1 Score: 72.4 bits (176), Expect = 3.600e-13
Identity = 35/73 (47.95%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
            VR   F   G ++A+G N +TLRVC  P   EL  N       VL +R  HH GSI+CLG+SPD +LLATG +
Sbjct:  373 VRCAEFHPAGRVYAIGSNSKTLRVCAYPDLNELTENHVSYQPTVLFKRTKHHKGSIYCLGWSPDGNLLATGSN 445          
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: A0A226DWQ7_FOLCA (WD repeat-containing protein 47 n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DWQ7_FOLCA)

HSP 1 Score: 72.0 bits (175), Expect = 4.940e-13
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
            +R   F  +G ++A+G N +TLRVC  P   +L+ + +     VL +R  HH GSI+C+G+SPD +LLATG +
Sbjct:  429 IRCAEFHPEGKVYAIGSNSKTLRVCSYPDLGDLSESHHPYQPTVLFKRTKHHKGSIYCMGWSPDGALLATGSN 501          
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: A0A4Z2DH44_SCHJA (WD repeat-containing protein n=2 Tax=Schistosoma japonicum TaxID=6182 RepID=A0A4Z2DH44_SCHJA)

HSP 1 Score: 72.0 bits (175), Expect = 4.990e-13
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
            +R + F   G L+AVG N + LRVC+ P+   L+ N   T   VL+RR+ +H GSI+C+ +SPD  L+ATG +
Sbjct:  774 IRCIAFHPSGRLYAVGSNSKFLRVCQYPNVQRLSPNHVATSPVVLMRRQKYHRGSIYCVAWSPDGRLIATGSN 846          
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Match: A0A8J2J3C0_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2J3C0_9HEXA)

HSP 1 Score: 71.2 bits (173), Expect = 9.240e-13
Identity = 33/73 (45.21%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    1 VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRRENHHLGSIFCLGFSPDSSLLATGDD 219
            VR   F   G ++A+G N +TLRVC  P   +L  N       VL +R  HH GSI+C+G+SPD  LLATG +
Sbjct:  470 VRCAEFHPSGKVYAIGSNSKTLRVCAYPDLIDLTENHVAYQPTVLFKRTKHHKGSIYCMGWSPDGKLLATGSN 542          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71191.18216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHR8_ECTSI3.780e-3178.05CTLH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A8J1UHZ6_OWEFU1.430e-1343.84Ofus.G131431 protein n=3 Tax=Owenia fusiformis Tax... [more]
UPI000B9028781.900e-1345.21WD repeat-containing protein 47 isoform X2 n=1 Tax... [more]
UPI001604FDB01.900e-1345.21WD repeat-containing protein 47 isoform X1 n=1 Tax... [more]
UPI001198263E2.630e-1345.21WD repeat-containing protein 47 isoform X2 n=1 Tax... [more]
A0A094ZT64_SCHHA2.670e-1343.84WD repeat-containing protein 47 n=9 Tax=Schistosom... [more]
A0A1D2MX29_ORCCI3.600e-1347.95WD repeat-containing protein 47 n=1 Tax=Orchesella... [more]
A0A226DWQ7_FOLCA4.940e-1342.47WD repeat-containing protein 47 n=1 Tax=Folsomia c... [more]
A0A4Z2DH44_SCHJA4.990e-1343.84WD repeat-containing protein n=2 Tax=Schistosoma j... [more]
A0A8J2J3C0_9HEXA9.240e-1345.21Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71191contigEcto-sp13_S_contig71191:177..673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score123.2
Seed ortholog evalue4.9e-26
Seed eggNOG ortholog2880.D8LHR8
Preferred nameWDR47
Model size219
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGsKOG0641@1,KOG0641@2759
Cds size219
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463977.0088558-CDS-Ecto-sp13_S_contig71191:176..2621681463977.0088558-CDS-Ecto-sp13_S_contig71191:176..262Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71191 177..262 -
1681463977.0223854-CDS-Ecto-sp13_S_contig71191:540..6731681463977.0223854-CDS-Ecto-sp13_S_contig71191:540..673Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71191 541..673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71191.18216.1prot_Ecto-sp13_S_contig71191.18216.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig71191 177..673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig71191.18216.1

>prot_Ecto-sp13_S_contig71191.18216.1 ID=prot_Ecto-sp13_S_contig71191.18216.1|Name=mRNA_Ecto-sp13_S_contig71191.18216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
VRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASNTNGTIVAVLIRREN
HHLGSIFCLGFSPDSSLLATGDD
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mRNA from alignment at Ecto-sp13_S_contig71191:177..673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig71191.18216.1 ID=mRNA_Ecto-sp13_S_contig71191.18216.1|Name=mRNA_Ecto-sp13_S_contig71191.18216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=497bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71191:177..673- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAGGTCTGTGGGCTTCTCTGCCGACGGAGGCCTTTTCGCGGTGGGGTG CAACGACAGGACCCTGCGGGTTTGCAAGACACCCTCGGAGGCCGAGCTGG CTTCCAATACCAATGGTACGATCGTTGCCGTTTGTGGTGATGGTGGTGGT TATAGTGGTGGTGAGGCTGTCGTTGTTGCGGGTGTTGATGGAAGAATGCG GTAGAATGCGTCTCTGTTGTCGCCGACACTTCGCCGGTTACTTTACCGTT CCTCTCCCGTCTGCCTAGCGCGTCCAAGACGGTGTCCCCAGCGTGTCTCT GATAAAGTATCGATACTGGTACACCCTTGTCCCGTGAACCCTACCGTCCC GTTCGTTGCCTTGCAGGGATGGACAGCGACAGTCTGGTCCAGGAGTGGCC GTCGACGGAAGTGATAAGGAGGGAGAACCATCACCTCGGATCCATCTTCT GCCTCGGTTTCAGCCCCGACTCGTCTTTGCTCGCCACAGGTGACGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71191:177..673-

>mRNA_Ecto-sp13_S_contig71191.18216.1 ID=mRNA_Ecto-sp13_S_contig71191.18216.1|Name=mRNA_Ecto-sp13_S_contig71191.18216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71191:177..673- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAGGTCTGTGGGCTTCTCTGCCGACGGAGGCCTTTTCGCGGTGGGGTG
CAACGACAGGACCCTGCGGGTTTGCAAGACACCCTCGGAGGCCGAGCTGG
CTTCCAATACCAATGGTACGATCGTTGCCGTTTTGATAAGGAGGGAGAAC
CATCACCTCGGATCCATCTTCTGCCTCGGTTTCAGCCCCGACTCGTCTTT
GCTCGCCACAGGTGACGAC
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