mRNA_Ecto-sp13_S_contig7111.18209.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7111.18209.1
Unique NamemRNA_Ecto-sp13_S_contig7111.18209.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7111.18209.1 vs. uniprot
Match: D8LLS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS5_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.080e-42
Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:    1 MRRLLDKGVPIDAETEDGDTPLSLAISAGGVGSVGFLVKAGAALDLADKEGRSCLDLAAVMFSLFPEEVREEGFDVHPVI 240
            MRRLLDKGVPIDAETE+GDTPLSLAISAGGVGSVGFLVKAGAALDLADKEGR+CLDLAAVMFSLFP++VRE+G  VHPVI
Sbjct:   20 MRRLLDKGVPIDAETENGDTPLSLAISAGGVGSVGFLVKAGAALDLADKEGRNCLDLAAVMFSLFPKKVREKGVGVHPVI 99
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BLAST of mRNA_Ecto-sp13_S_contig7111.18209.1 vs. uniprot
Match: A0A6H5KV01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV01_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.300e-22
Identity = 53/73 (72.60%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 MRRLLDKGVPIDAETEDGDTPLSLAISAGGVGSVGFLVKAGAALDLADKEGRSCLDLAAVMFSLFPEEVREEG 219
            MRRLLDKGVPIDAETE+GDTPLSLAISAGGVGSVGFLVKAGAALDLADK     L      F L   +V  E 
Sbjct:    1 MRRLLDKGVPIDAETENGDTPLSLAISAGGVGSVGFLVKAGAALDLADKVIIRFLQNNGATFKLIDSDVIAES 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7111.18209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLS5_ECTSI1.080e-4291.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV01_9PHAE1.300e-2272.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7111contigEcto-sp13_S_contig7111:5510..6234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size240
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-02_002690.1
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463976.3657646-CDS-Ecto-sp13_S_contig7111:5509..56021681463976.3657646-CDS-Ecto-sp13_S_contig7111:5509..5602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7111 5510..5602 -
1681463976.3756933-CDS-Ecto-sp13_S_contig7111:6087..62341681463976.3756933-CDS-Ecto-sp13_S_contig7111:6087..6234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7111 6088..6234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7111.18209.1prot_Ecto-sp13_S_contig7111.18209.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7111 5510..6234 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7111.18209.1

>prot_Ecto-sp13_S_contig7111.18209.1 ID=prot_Ecto-sp13_S_contig7111.18209.1|Name=mRNA_Ecto-sp13_S_contig7111.18209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
MRRLLDKGVPIDAETEDGDTPLSLAISAGGVGSVGFLVKAGAALDLADKE
GRSCLDLAAVMFSLFPEEVREEGFDVHPVI
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mRNA from alignment at Ecto-sp13_S_contig7111:5510..6234-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7111.18209.1 ID=mRNA_Ecto-sp13_S_contig7111.18209.1|Name=mRNA_Ecto-sp13_S_contig7111.18209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=725bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7111:5510..6234- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGACGGCTCCTGGACAAGGGCGTCCCGATCGACGCGGAGACGGAAGA
CGGCGACACGCCGCTGAGCCTAGCCATTAGCGCCGGCGGCGTGGGATCCG
TCGGGTTCCTGGTGAAGGCCGGTGCTGCCCTCGATCTAGCGGACAAGGTG
CGTCTTACGTCTCGCATCTTGTTTTTTGTGCACGCGGACAGCAAGTGGTC
TGGGCGCTTTTTGGCGCGTCTTGCGGGTTGCAAGTGCTGTGTGTGTGTGT
GTGGTTTTGTGTGCCTGTGGAAGTGTTGTGTGCTTGTCACGCGTGTTTTT
GCGTGGCTATGTGCAAGTTTTTTGCGCATGTCTAGGGTGTTTCGACCTGT
CCAATCGTTGTGTCGCATCCTTCCGGTGTTCCGTGTGCGGGTGCAGCAGT
GCACATGTTTGCCGACGACTACCAAACTAAACAAGGTCCACGATCTCGAA
GAGCCAGCTACTGGAGTTCACGATGTCGGAGGTGCCTCTGATGGAATAGG
AACGGCAACACAGGAATGCTGACACACACTACGTCGATGGCCGAATGACG
TATGCCAAGCCAAGCAACAACTGAGCCCCCCGCCCCCCCTGGCCTCCAAT
GATTTCACGGTGTGCTTTTTTTTTCTTGTCAGGAGGGCCGTAGCTGTCTG
GACCTTGCCGCTGTGATGTTCAGCCTTTTCCCGGAAGAGGTGAGGGAGGA
GGGGTTTGACGTGCATCCCGTGATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7111:5510..6234-

>mRNA_Ecto-sp13_S_contig7111.18209.1 ID=mRNA_Ecto-sp13_S_contig7111.18209.1|Name=mRNA_Ecto-sp13_S_contig7111.18209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7111:5510..6234- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGACGGCTCCTGGACAAGGGCGTCCCGATCGACGCGGAGACGGAAGA
CGGCGACACGCCGCTGAGCCTAGCCATTAGCGCCGGCGGCGTGGGATCCG
TCGGGTTCCTGGTGAAGGCCGGTGCTGCCCTCGATCTAGCGGACAAGGAG
GGCCGTAGCTGTCTGGACCTTGCCGCTGTGATGTTCAGCCTTTTCCCGGA
AGAGGTGAGGGAGGAGGGGTTTGACGTGCATCCCGTGATC
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