prot_Ecto-sp13_S_contig70959.18183.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig70959.18183.1
Unique Nameprot_Ecto-sp13_S_contig70959.18183.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length113
Homology
BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: D7FSG2_ECTSI (WD-repeat protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSG2_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 2.390e-61
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0
Query:    8 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 111
            YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPT GQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV
Sbjct:  151 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTTGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 254          
BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: A0A091N3D6_9PASS (DNA excision repair protein ERCC-8 (Fragment) n=2 Tax=Acanthisitta chloris TaxID=57068 RepID=A0A091N3D6_9PASS)

HSP 1 Score: 117 bits (293), Expect = 2.980e-29
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 0
Query:    8 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 111
            YP DTG+F S + D  +KVWDTNTL +   F F++ VYS  MSP   +H LIAVG+ SP+ +LCD++SG+ +H L GH +AV A +WSPR EF+LATGSAD  V
Sbjct:   83 YPHDTGMFTSSSFDKTLKVWDTNTLQLADTFHFQETVYSHHMSPIATKHCLIAVGTKSPKVQLCDLKSGSSSHILQGHRQAVLAVSWSPRHEFILATGSADGKV 186          
BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: A0A8B9FYU3_9PSIT (ERCC excision repair 8, CSA ubiquitin ligase complex subunit n=1 Tax=Amazona collaria TaxID=241587 RepID=A0A8B9FYU3_9PSIT)

HSP 1 Score: 116 bits (291), Expect = 5.410e-29
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 0
Query:    8 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 111
            YP DTG+F S + D  +K+WDTNTL     F FK  VYS  MSP    H L+AVG+ SP+ +LCD++SG+F+H L GH + V A AWSPR E++LATGSAD  V
Sbjct:   50 YPHDTGMFTSSSFDKTLKIWDTNTLKSADAFHFKGTVYSHHMSPVATNHCLVAVGTKSPKVQLCDLKSGSFSHILQGHRQEVLAVAWSPRHEYVLATGSADGRV 153          
BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: UPI0010A8561E (DNA excision repair protein ERCC-8 isoform X2 n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=UPI0010A8561E)

HSP 1 Score: 116 bits (290), Expect = 7.920e-29
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 0
Query:    8 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 111
            YP DTG+F S + D  +K+WDTNTL    EF F+  VYS  MSP   +H LIAVG+ SP+ +LCD++SG+ +H L GH + + A +WSPRSE++LATGSAD  V
Sbjct:   80 YPHDTGIFTSSSFDKTLKIWDTNTLQPADEFHFEGTVYSHHMSPIATKHCLIAVGTKSPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRSEYILATGSADSRV 183          
BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: A0A0Q3PY90_AMAAE (DNA excision repair protein ERCC-8 n=7 Tax=Psittaciformes TaxID=9223 RepID=A0A0Q3PY90_AMAAE)

HSP 1 Score: 116 bits (291), Expect = 8.360e-29
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 0
Query:    8 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 111
            YP DTG+F S + D  +K+WDTNTL     F FK  VYS  MSP    H L+AVG+ SP+ +LCD++SG+F+H L GH + V A AWSPR E++LATGSAD  V
Sbjct:  108 YPHDTGMFTSSSFDKTLKIWDTNTLKSADAFHFKGTVYSHHMSPVATNHCLVAVGTKSPKVQLCDLKSGSFSHILQGHRQEVLAVAWSPRHEYVLATGSADGRV 211          
BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: Q0JHK7_ORYSJ (Os01g0857900 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q0JHK7_ORYSJ)

HSP 1 Score: 110 bits (276), Expect = 1.040e-28
Identity = 55/104 (52.88%), Postives = 68/104 (65.38%), Query Frame = 0
Query:    8 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 111
            YPVDTGLFV+ + D  VKVWDTN+  VV++F    KVYSA+MSP    H LIA GS   Q  LCDI SGAF H LSGH + + +  WS  SE++L +G  D  +
Sbjct:    5 YPVDTGLFVTASFDQYVKVWDTNSTQVVMDFKMPGKVYSAAMSPIATTHMLIATGSADVQVHLCDIASGAFTHTLSGHRDGIMSLEWSTSSEWILMSGGCDGAI 108          
BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: A0A453FYU7_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FYU7_AEGTS)

HSP 1 Score: 113 bits (283), Expect = 1.260e-28
Identity = 56/104 (53.85%), Postives = 69/104 (66.35%), Query Frame = 0
Query:    8 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 111
            YPVDTGLFV+ + D  VKVWDTN+  VV++F    KVYSA+MSP    H LIA GS   Q RLCDI SGAF H LSGH + + +  WS  SE++L +G  D  +
Sbjct:  104 YPVDTGLFVTASFDNYVKVWDTNSTQVVMDFKMPGKVYSAAMSPIATTHMLIATGSADVQVRLCDIASGAFTHTLSGHHDGIMSLEWSTSSEWILMSGGCDGAI 207          
BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: A0A2P2LJE2_RHIMU (WD-repeat protein n=3 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2LJE2_RHIMU)

HSP 1 Score: 113 bits (283), Expect = 1.730e-28
Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 0
Query:    8 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 111
            YP+DTGLFV+G+ D  VK+WDTNT  +V+ F    KVY  +MSP    H LIA G++  Q RLCDI SGAF+H LSGH + V +  WS  SE++L TG  D  +
Sbjct:  112 YPIDTGLFVTGSYDHTVKIWDTNTTQMVMNFKLPGKVYKTAMSPLSTSHMLIAAGTEDVQVRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLVTGGCDGAI 215          
BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: A0A6I8NHV3_ORNAN (ERCC excision repair 8, CSA ubiquitin ligase complex subunit n=5 Tax=Monotremata TaxID=9255 RepID=A0A6I8NHV3_ORNAN)

HSP 1 Score: 116 bits (290), Expect = 1.880e-28
Identity = 56/104 (53.85%), Postives = 74/104 (71.15%), Query Frame = 0
Query:    8 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 111
            YP DTG+F S + D  +K+WDTNTL    EF F+  VYS  MSP   +H LIAVG+ SP+ +LCD++SG+ +H L GH + + A +WSPRSE++LATGSAD  V
Sbjct:  146 YPHDTGIFTSSSFDKTLKIWDTNTLQPADEFHFEGTVYSHHMSPIATKHCLIAVGTKSPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRSEYILATGSADSRV 249          
BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Match: A0A7K8W6D5_9FURN (ERCC8 protein (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7K8W6D5_9FURN)

HSP 1 Score: 112 bits (281), Expect = 2.150e-28
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 0
Query:    8 YPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTV 111
            YP DTG+F S + D  +K+WDTNTL     F F+  VYS  MSP   +H LIAVG+ SP+ +LCD++SG+ +H L GH +AV A +WSPR E++LATGSAD  V
Sbjct:   83 YPHDTGMFTSSSFDKTLKIWDTNTLQPADIFHFEGTVYSHHMSPVATKHCLIAVGTKSPKVQLCDLKSGSSSHILQGHRQAVLAVSWSPRHEYVLATGSADGKV 186          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70959.18183.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSG2_ECTSI2.390e-6199.04WD-repeat protein, putative n=2 Tax=Ectocarpus Tax... [more]
A0A091N3D6_9PASS2.980e-2955.77DNA excision repair protein ERCC-8 (Fragment) n=2 ... [more]
A0A8B9FYU3_9PSIT5.410e-2954.81ERCC excision repair 8, CSA ubiquitin ligase compl... [more]
UPI0010A8561E7.920e-2953.85DNA excision repair protein ERCC-8 isoform X2 n=1 ... [more]
A0A0Q3PY90_AMAAE8.360e-2954.81DNA excision repair protein ERCC-8 n=7 Tax=Psittac... [more]
Q0JHK7_ORYSJ1.040e-2852.88Os01g0857900 protein n=1 Tax=Oryza sativa subsp. j... [more]
A0A453FYU7_AEGTS1.260e-2853.85Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A2P2LJE2_RHIMU1.730e-2851.92WD-repeat protein n=3 Tax=Rhizophora mucronata Tax... [more]
A0A6I8NHV3_ORNAN1.880e-2853.85ERCC excision repair 8, CSA ubiquitin ligase compl... [more]
A0A7K8W6D5_9FURN2.150e-2853.85ERCC8 protein (Fragment) n=4 Tax=Neognathae TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 5..113
e-value: 2.1E-37
score: 130.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 12..28
e-value: 0.044
score: 14.7
coord: 80..111
e-value: 1.4E-4
score: 22.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 82..113
score: 10.442
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 11..31
score: 8.871
IPR042238DNA excision repair protein Rad28/ERCC8/Ckn1/ATCSA-1PANTHERPTHR46202FAMILY NOT NAMEDcoord: 8..112
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..113
score: 12.684
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 9..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70959contigEcto-sp13_S_contig70959:19..631 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70959.18183.1mRNA_Ecto-sp13_S_contig70959.18183.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig70959 19..631 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig70959.18183.1 ID=prot_Ecto-sp13_S_contig70959.18183.1|Name=mRNA_Ecto-sp13_S_contig70959.18183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
GLKLSERYPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMS
PTIGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEF
LLATGSADQTVGV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat
IPR042238Rad28/ERCC8/Ckn1/ATCSA-1
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf