mRNA_Ecto-sp13_S_contig70855.18167.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: D8LEW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEW6_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 5.520e-21 Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1
Query: 1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAKKAKKSS 135
EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAKKAKKSS
Sbjct: 591 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAKKAKKSS 635
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: A0A2H1CGP1_FASHE (Uncharacterized protein n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1CGP1_FASHE) HSP 1 Score: 57.8 bits (138), Expect = 7.530e-9 Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1
Query: 1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAK 117
E L++KG+KCGGT +RAARLFS++ LAPEDYP +L AK
Sbjct: 162 ETLIAKGIKCGGTLSERAARLFSIRDLAPEDYPAKLRAK 200
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: UPI00146DB8CA (replication stress response regulator SDE2 isoform X1 n=3 Tax=Notothenioidei TaxID=8205 RepID=UPI00146DB8CA) HSP 1 Score: 57.8 bits (138), Expect = 1.630e-8 Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1
Query: 1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAKKAK 126
+ELMS+G+KCGGT +RAARLFS++ L PED P L AKK K
Sbjct: 557 QELMSRGLKCGGTLSERAARLFSVRALKPEDVPAALLAKKKK 598
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: A0A504YQD7_FASGI (Replication stress response regulator SDE2 n=2 Tax=Fasciola TaxID=6191 RepID=A0A504YQD7_FASGI) HSP 1 Score: 56.2 bits (134), Expect = 5.590e-8 Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAK 117
E L++KG+KCGGT +RAARLFS++ LAPEDYP +L K
Sbjct: 311 ETLIAKGIKCGGTLSERAARLFSIRGLAPEDYPAKLRTK 349
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: A0A183AP33_9TREM (Replication stress response regulator SDE2 n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183AP33_9TREM) HSP 1 Score: 55.8 bits (133), Expect = 7.430e-8 Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query: 1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAK 117
E L SKG+KCGGT +RA RLFS++ LAPEDYP +L AK
Sbjct: 281 ETLTSKGLKCGGTLSERATRLFSIRDLAPEDYPAKLRAK 319
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: A0A4S2MCZ7_OPIFE (Replication stress response regulator SDE2 n=1 Tax=Opisthorchis felineus TaxID=147828 RepID=A0A4S2MCZ7_OPIFE) HSP 1 Score: 55.8 bits (133), Expect = 7.580e-8 Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAK 117
E L+++G+KCGGT +RAARLFS++ L PEDYP +L AK
Sbjct: 303 ESLVARGLKCGGTIQERAARLFSIRGLQPEDYPPKLLAK 341
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: A0A7R8WK62_9CRUS (Replication stress response regulator SDE2 n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WK62_9CRUS) HSP 1 Score: 54.7 bits (130), Expect = 1.990e-7 Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1
Query: 7 LMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAKKAKKSS 135
L ++G+KCGGT QRA RLFS+K LAPE+YP AKK KK +
Sbjct: 301 LENRGLKCGGTLTQRAERLFSVKGLAPENYPASALAKKKKKQT 343
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: G7YF47_CLOSI (Replication stress response regulator SDE2 n=2 Tax=Clonorchis sinensis TaxID=79923 RepID=G7YF47_CLOSI) HSP 1 Score: 53.9 bits (128), Expect = 3.700e-7 Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAK 117
E L+++G+KCGGT +RAARLFS++ L PEDYP ++ AK
Sbjct: 325 ESLVARGLKCGGTIQERAARLFSIRGLQPEDYPPKIRAK 363
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: UPI000B907EA6 (protein SDE2 homolog n=1 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=UPI000B907EA6) HSP 1 Score: 52.8 bits (125), Expect = 4.310e-7 Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1
Query: 1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAKKAK 126
EELMS+G+KCGGT +RAARLFS++ L+P+ L AK AK
Sbjct: 135 EELMSRGLKCGGTLSERAARLFSVRGLSPDQMDSALLAKAAK 176
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: UPI001B3AE8F8 (replication stress response regulator SDE2 isoform X1 n=2 Tax=Toxotes jaculatrix TaxID=941984 RepID=UPI001B3AE8F8) HSP 1 Score: 53.1 bits (126), Expect = 6.960e-7 Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1
Query: 1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAKKAK 126
EELMS+G+KCGGT +RAARLFS++ L P+ EL AK K
Sbjct: 355 EELMSRGLKCGGTLSERAARLFSIRGLTPDQIDPELLAKPGK 396 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig70855.18167.1 >prot_Ecto-sp13_S_contig70855.18167.1 ID=prot_Ecto-sp13_S_contig70855.18167.1|Name=mRNA_Ecto-sp13_S_contig70855.18167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp MSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAKKAKKSS*back to top mRNA from alignment at Ecto-sp13_S_contig70855:558..695- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig70855.18167.1 ID=mRNA_Ecto-sp13_S_contig70855.18167.1|Name=mRNA_Ecto-sp13_S_contig70855.18167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70855:558..695- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70855:558..695- >mRNA_Ecto-sp13_S_contig70855.18167.1 ID=mRNA_Ecto-sp13_S_contig70855.18167.1|Name=mRNA_Ecto-sp13_S_contig70855.18167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70855:558..695- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |