mRNA_Ecto-sp13_S_contig70855.18167.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70855.18167.1
Unique NamemRNA_Ecto-sp13_S_contig70855.18167.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: D8LEW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEW6_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 5.520e-21
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1
Query:    1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAKKAKKSS 135
            EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAKKAKKSS
Sbjct:  591 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAKKAKKSS 635          
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: A0A2H1CGP1_FASHE (Uncharacterized protein n=1 Tax=Fasciola hepatica TaxID=6192 RepID=A0A2H1CGP1_FASHE)

HSP 1 Score: 57.8 bits (138), Expect = 7.530e-9
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1
Query:    1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAK 117
            E L++KG+KCGGT  +RAARLFS++ LAPEDYP +L AK
Sbjct:  162 ETLIAKGIKCGGTLSERAARLFSIRDLAPEDYPAKLRAK 200          
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: UPI00146DB8CA (replication stress response regulator SDE2 isoform X1 n=3 Tax=Notothenioidei TaxID=8205 RepID=UPI00146DB8CA)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-8
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1
Query:    1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAKKAK 126
            +ELMS+G+KCGGT  +RAARLFS++ L PED P  L AKK K
Sbjct:  557 QELMSRGLKCGGTLSERAARLFSVRALKPEDVPAALLAKKKK 598          
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: A0A504YQD7_FASGI (Replication stress response regulator SDE2 n=2 Tax=Fasciola TaxID=6191 RepID=A0A504YQD7_FASGI)

HSP 1 Score: 56.2 bits (134), Expect = 5.590e-8
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1
Query:    1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAK 117
            E L++KG+KCGGT  +RAARLFS++ LAPEDYP +L  K
Sbjct:  311 ETLIAKGIKCGGTLSERAARLFSIRGLAPEDYPAKLRTK 349          
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: A0A183AP33_9TREM (Replication stress response regulator SDE2 n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183AP33_9TREM)

HSP 1 Score: 55.8 bits (133), Expect = 7.430e-8
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query:    1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAK 117
            E L SKG+KCGGT  +RA RLFS++ LAPEDYP +L AK
Sbjct:  281 ETLTSKGLKCGGTLSERATRLFSIRDLAPEDYPAKLRAK 319          
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: A0A4S2MCZ7_OPIFE (Replication stress response regulator SDE2 n=1 Tax=Opisthorchis felineus TaxID=147828 RepID=A0A4S2MCZ7_OPIFE)

HSP 1 Score: 55.8 bits (133), Expect = 7.580e-8
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1
Query:    1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAK 117
            E L+++G+KCGGT  +RAARLFS++ L PEDYP +L AK
Sbjct:  303 ESLVARGLKCGGTIQERAARLFSIRGLQPEDYPPKLLAK 341          
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: A0A7R8WK62_9CRUS (Replication stress response regulator SDE2 n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WK62_9CRUS)

HSP 1 Score: 54.7 bits (130), Expect = 1.990e-7
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1
Query:    7 LMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAKKAKKSS 135
            L ++G+KCGGT  QRA RLFS+K LAPE+YP    AKK KK +
Sbjct:  301 LENRGLKCGGTLTQRAERLFSVKGLAPENYPASALAKKKKKQT 343          
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: G7YF47_CLOSI (Replication stress response regulator SDE2 n=2 Tax=Clonorchis sinensis TaxID=79923 RepID=G7YF47_CLOSI)

HSP 1 Score: 53.9 bits (128), Expect = 3.700e-7
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1
Query:    1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAK 117
            E L+++G+KCGGT  +RAARLFS++ L PEDYP ++ AK
Sbjct:  325 ESLVARGLKCGGTIQERAARLFSIRGLQPEDYPPKIRAK 363          
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: UPI000B907EA6 (protein SDE2 homolog n=1 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=UPI000B907EA6)

HSP 1 Score: 52.8 bits (125), Expect = 4.310e-7
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1
Query:    1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAKKAK 126
            EELMS+G+KCGGT  +RAARLFS++ L+P+     L AK AK
Sbjct:  135 EELMSRGLKCGGTLSERAARLFSVRGLSPDQMDSALLAKAAK 176          
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Match: UPI001B3AE8F8 (replication stress response regulator SDE2 isoform X1 n=2 Tax=Toxotes jaculatrix TaxID=941984 RepID=UPI001B3AE8F8)

HSP 1 Score: 53.1 bits (126), Expect = 6.960e-7
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1
Query:    1 EELMSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAKKAK 126
            EELMS+G+KCGGT  +RAARLFS++ L P+    EL AK  K
Sbjct:  355 EELMSRGLKCGGTLSERAARLFSIRGLTPDQIDPELLAKPGK 396          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70855.18167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEW6_ECTSI5.520e-21100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2H1CGP1_FASHE7.530e-966.67Uncharacterized protein n=1 Tax=Fasciola hepatica ... [more]
UPI00146DB8CA1.630e-864.29replication stress response regulator SDE2 isoform... [more]
A0A504YQD7_FASGI5.590e-864.10Replication stress response regulator SDE2 n=2 Tax... [more]
A0A183AP33_9TREM7.430e-866.67Replication stress response regulator SDE2 n=1 Tax... [more]
A0A4S2MCZ7_OPIFE7.580e-861.54Replication stress response regulator SDE2 n=1 Tax... [more]
A0A7R8WK62_9CRUS1.990e-760.47Replication stress response regulator SDE2 n=1 Tax... [more]
G7YF47_CLOSI3.700e-758.97Replication stress response regulator SDE2 n=2 Tax... [more]
UPI000B907EA64.310e-759.52protein SDE2 homolog n=1 Tax=Acanthochromis polyac... [more]
UPI001B3AE8F86.960e-759.52replication stress response regulator SDE2 isoform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70855contigEcto-sp13_S_contig70855:558..695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score86.3
Seed ortholog evalue3.9e-15
Seed eggNOG ortholog2880.D8LEW6
Model size138
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.cell cycle
EggNOG OGsKOG2242@1,KOG2242@2759,KOG2827@1,KOG2827@2759
Cds size129
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463971.506949-CDS-Ecto-sp13_S_contig70855:557..6861681463971.506949-CDS-Ecto-sp13_S_contig70855:557..686Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70855 558..686 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463971.5177243-UTR-Ecto-sp13_S_contig70855:686..6951681463971.5177243-UTR-Ecto-sp13_S_contig70855:686..695Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig70855 687..695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70855.18167.1prot_Ecto-sp13_S_contig70855.18167.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70855 558..686 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70855.18167.1

>prot_Ecto-sp13_S_contig70855.18167.1 ID=prot_Ecto-sp13_S_contig70855.18167.1|Name=mRNA_Ecto-sp13_S_contig70855.18167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
MSKGVKCGGTHYQRAARLFSLKRLAPEDYPQELFAKKAKKSS*
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mRNA from alignment at Ecto-sp13_S_contig70855:558..695-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70855.18167.1 ID=mRNA_Ecto-sp13_S_contig70855.18167.1|Name=mRNA_Ecto-sp13_S_contig70855.18167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70855:558..695- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGCTCATGTCGAAGGGGGTCAAGTGCGGAGGAACACACTACCAGCG GGCGGCGCGTCTGTTCTCTCTCAAGAGACTGGCGCCCGAGGACTACCCGC AGGAGCTGTTCGCAAAGAAGGCCAAGAAATCGTCATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70855:558..695-

>mRNA_Ecto-sp13_S_contig70855.18167.1 ID=mRNA_Ecto-sp13_S_contig70855.18167.1|Name=mRNA_Ecto-sp13_S_contig70855.18167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70855:558..695- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGAAGGGGGTCAAGTGCGGAGGAACACACTACCAGCGGGCGGCGCG
TCTGTTCTCTCTCAAGAGACTGGCGCCCGAGGACTACCCGCAGGAGCTGT
TCGCAAAGAAGGCCAAGAAATCGTCATAA
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