mRNA_Ecto-sp13_S_contig7074.18153.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: D7FT74_ECTSI (UBX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT74_ECTSI) HSP 1 Score: 723 bits (1867), Expect = 1.290e-252 Identity = 390/451 (86.47%), Postives = 395/451 (87.58%), Query Frame = 2
Query: 842 DQIRTAGISYKESLLAVTAEGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLK-------------------VVQLRPEPQVTVIDTDMEIELDLPEKAREQLQEKGAQDRAKTLRAHMGAATTSSRGSSPTQSLSXXXXXXXXXXXXXXXXXXXXXRDTSTTGLSPMDDSESDXXXDLDSDDEGSTAGGPKKPAFDLEKHRLAKFQQLPDEPPRDAEGVFTCQLRTTEGKFTRRFRFADALGVLLDFCEAQGGVPGQYRLVMPFPRRVLTRDDASAGTTLREAGLTSKQESVILERL 2137
DQIRTAGISYKESLLAVTA+GEGDKILLPPSALE LSRQDAVGLGPMLFELTCTTSG APT+QQQ EKAP L GGT TTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISAN DPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGD+LSVWRRGKEFSLK VV+LRPEPQVTVIDTDMEIELDLPEKAREQLQEKGAQDRAKTLRAHMGAAT SSRGSSPTQSLS RDTSTTGLSPMDDSESD DLDSDDE ST GGPKK AFDLEKHRLAKFQQLP+EPPRD EGVFTCQLRTTEGKFTRRFRFADALGVLLDFCEAQGGVPGQYRLVMPFPRRVLTRDDASAGTTL EAGLTSKQESVILERL
Sbjct: 71 DQIRTAGISYKESLLAVTADGEGDKILLPPSALECLSRQDAVGLGPMLFELTCTTSGAAPTSQQQPEKAPALQGGTITTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANDDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDHLSVWRRGKEFSLKSEDSHSPLTPEREPPLTMQVVELRPEPQVTVIDTDMEIELDLPEKAREQLQEKGAQDRAKTLRAHMGAATISSRGSSPTQSLSPPPSGRGYAVGGKGSSVAAGGRDTSTTGLSPMDDSESDDDSDLDSDDERSTPGGPKKGAFDLEKHRLAKFQQLPEEPPRDEEGVFTCQLRTTEGKFTRRFRFADALGVLLDFCEAQGGVPGQYRLVMPFPRRVLTRDDASAGTTLHEAGLTSKQESVILERL 521
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: A0A4D9CT31_9STRA (UBX domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CT31_9STRA) HSP 1 Score: 178 bits (452), Expect = 7.650e-45 Identity = 108/237 (45.57%), Postives = 143/237 (60.34%), Query Frame = 2
Query: 854 TAGISYKESLLAVTAEGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAA--AHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLKVVQLRPEPQVTVIDTDMEIELDLPEKAREQLQE 1558
TAGI+Y L T GEGDKI+LPPSALE+L++QDA+ LGPMLF+L+ + + K+ +L G R THAGVLEF A++G IGLP KV SL+ + SR E + G E PA V V+YVRL K T+A+V P T L V EL+ MLE N++NHATL+ GD L VW RG+ F L+V L P VTVIDTD+ +++++PE+ E+ +E
Sbjct: 71 TAGITYSCDLWPYTVSGEGDKIILPPSALETLTQQDALALGPMLFQLSLLPA--------EGNKSKQLPAGA----RVTHAGVLEFSAEDGRIGLPLKVRKSLVAEPEETREDGSRGMKERVEGPGGEEGDSRASPAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVTGLEPTQAVTVIDTDLTVDVEVPEEQTERERE 295
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: A0A7S3XVE0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVE0_HETAK) HSP 1 Score: 130 bits (328), Expect = 1.560e-31 Identity = 71/141 (50.35%), Postives = 91/141 (64.54%), Query Frame = 2
Query: 1085 TTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLKVVQLRPEPQVTVIDTD 1507
TTH GVLEF A+EG +GLP KV+ SL G A Q +N + + A + V ++Y+RL KATFA++ PE GLSQ+ E+RA+LEHNMRNHATL++GD L VW RGK F +V++LRP TVIDTD
Sbjct: 14 TTHCGVLEFTAEEGCVGLPPKVLASL-GIAPEQ----------------DNTQHQGVAPSSVGQVQIKYIRLEKATFAKIRPEKAGLSQIDEIRAVLEHNMRNHATLSLGDKLIVWFRGKAFECEVLELRPAAACTVIDTD 137
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: A0A1V9YQB9_9STRA (UBX domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQB9_9STRA) HSP 1 Score: 127 bits (319), Expect = 2.770e-27 Identity = 87/242 (35.95%), Postives = 127/242 (52.48%), Query Frame = 2
Query: 830 QEEADQIR----TAGISYKESLLAVTAEGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLKVVQLRPEPQVTVIDTDMEIELDLPEKA 1540
QEE D++ T GISY+++L AV + +GDKI LP SALE+L+ Q+A+ +G + FELTC + T THA VLEFVADEG+IG+P K+ +SL +P + D + VR+VRLAK F ++ P G + +A+LE ++ H TLT GD L V + G F + V +RPEPQV +++ D+E+++ LP +A
Sbjct: 61 QEELDRLEEERVTGGISYRKTLRAVPIDNDGDKITLPVSALEALNPQNALDMGVLSFELTCPLATTK-----------------------THASVLEFVADEGSIGIPPKIAMSL-----RLMPLDSVD------------------------IDVRFVRLAKGQFVQLQPLADGFGDRQLDFKALLERTLKTHTTLTEGDILLVRQGGVTFDVAVRAIRPEPQVKILNVDLEVDV-LPSEA 249
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: A0A3R7KPJ2_9STRA (UBX domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KPJ2_9STRA) HSP 1 Score: 127 bits (320), Expect = 2.980e-27 Identity = 96/250 (38.40%), Postives = 132/250 (52.80%), Query Frame = 2
Query: 821 ARKQEEA--DQIRTAGISYKESLLAVTAEGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMRNHATLTVGDYLSVWRRGKE-FSLKVVQLRPEPQVTVIDTDMEIELDLPEKAREQLQE 1558
AR+++ A +Q T GI Y + L+ V G+GDKI LP SALE L+ Q+A+ LG FEL+ G QQ E L THAGVLEFVADEGT+GLP KV SL H +P E++ VR+VRL K FAR+ G + + MLE ++R+H TL VGD L V R G+E F + V +L+PE V +++TD+E+++ +P +A Q +E
Sbjct: 60 ARQEQHALEEQRLTGGIKYLQQLIPVPTTGDGDKITLPVSALEELNPQNALELGVFTFELSYEEHG------QQGENERIL----------THAGVLEFVADEGTVGLPPKVAASLFQQTEH-LP---------------------------ESIRVRFVRLEKGKFARLQARGDGFGDRQIDFKHMLERSLRSHTTLMVGDVLFV-RHGRETFEVVVAELKPEAAVNILNTDLEVDI-VPSEAATQAKE 263
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: A0A7J9FTA0_9ROSI (Uncharacterized protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J9FTA0_9ROSI) HSP 1 Score: 120 bits (301), Expect = 4.450e-27 Identity = 75/222 (33.78%), Postives = 116/222 (52.25%), Query Frame = 2
Query: 860 GISYKESLLAVTAEGEGDKILLPPSALESLSRQDAVGLGPMLFELTCT-TSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLKVVQLRPEPQVTVIDTDMEIEL 1522
G+ + + L AV +G GDKI LPPS LS Q A GPM F L+ G++ T ++E RTTH+GVLEF ADEG++ +P V +L A +P V VRYVRL+K T+A++ P+ +G S + +A+LE ++R HATL+ D L+V + L+V++L+P ++V++TD+E+++
Sbjct: 10 GVVFYKILEAVPFQGSGDKIKLPPSCFTELSDQGAFDKGPMYFRLSLVHQEGSSATKDDEKEN-----------NRTTHSGVLEFTADEGSVAIPPHVWSNLFPMDAPNIPL----------------------------VEVRYVRLSKGTYAKLQPDGIGFSDLPNHKAILETSLRQHATLSQDDVLTVKYGELTYKLRVLELKPSSSISVLETDIEVDI 192
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: I0YPZ2_COCSC (UBX domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YPZ2_COCSC) HSP 1 Score: 125 bits (313), Expect = 4.830e-27 Identity = 126/416 (30.29%), Postives = 175/416 (42.07%), Query Frame = 2
Query: 911 DKILLPPSALESLSRQDAVGLGPMLFELTCTTSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQV--SELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLKVVQLRPEPQVTVIDTDMEIELDLPEKAREQL-QEKGAQDRAKTLRAHMGAATTSSRGSSPTQSLSXXXXXXXXXXXXXXXXXXXXXRDTSTTGLSPMDDSESDXXXDLDSDDEGSTAGGPKKPAFDLEKHRLAKFQQLPDEPPRDAEGVFTCQLRTTEG-KFTRRFRFADALGVLLDFCEAQGGV---PGQYRLVMPFPRRVLTRDDASAGTTLREAGLTSKQESVILERL 2137
+ +LLP S + L RQDA G LFE+ ++ T EL VL F A EGTIG+P +V + G A P + V V Y RL K + R P + + ++RA+LE + H+TL+ GD++SV G F L V +LRP V+VIDT+ME E++ + ++L QE+ A+ A R AA + L ++E + E + A DLE+ R K LP EPP D E V +C +R G +F+RRFR +D L L DF +AQ G PG YRLV FPRRV+ + TL + GL S+QE ++LE L
Sbjct: 61 EAVLLPASVGDDLMRQDAPKNGAQLFEIASSSGNTTHAGASLCRLMLELQPKRPLC-------VLAFTAAEGTIGMPPQVARNAFGDGASVSPEGAT-------------------------VDVLYRRLPKGEYVRFQPWSADFQREVGGDVRAVLEAALERHSTLSEGDWISVPFAGTAFDLTVQKLRPGRAVSVIDTEMEAEVEPSLETEQRLAQEEAARAEADRRREQELAAM-------------------------------------AQEALRQAAEAE---------EREKAEXXXXXXAAVDLERLRQEKAAALPPEPPAD-EAVTSCLIRLPNGARFSRRFRASDPLLHLFDFVDAQEGAGEGPGSYRLVAQFPRRVIGPHLPAPDATLADVGLASRQEVLLLEPL 397
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: A0A2K1KSX3_PHYPA (C2H2-type domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KSX3_PHYPA) HSP 1 Score: 129 bits (323), Expect = 5.890e-27 Identity = 81/223 (36.32%), Postives = 120/223 (53.81%), Query Frame = 2
Query: 860 GISYKESLLAVTAEGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGTAPTAQQQREKAPELH--GGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLKVVQLRPEPQVTVIDTDMEIEL 1522
GI + A+ G+GDKI LP S+ E LS Q A+ GPM FE++ G+ P+ E H G ++ R+THAGVLEF A+EG + LP V + A P S +NI G+ VRYVRL K T+A++ PE + V +A+LE +R HA+LT GD L+V G ++ L+V++L+P V+V++TD+E+++
Sbjct: 75 GIIFNRVFKALLVAGKGDKIRLPASSFEQLSSQSAIDKGPMFFEVSAVHHGSRPSTSSSAASHLEQHEINGESSKPRSTHAGVLEFTAEEGVVELPPHVWHN----AGFSDPEYLS-KNIH---------------RGIPEARVRYVRLPKGTYAKLQPEGGDFADVFNHKAVLETELRQHASLTEGDLLTVHHGGVDYGLRVLELKPRTNVSVLETDLEVDV 277
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: W7T6G4_9STRA (Ubiquitin fusion degradaton n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6G4_9STRA) HSP 1 Score: 123 bits (309), Expect = 6.040e-27 Identity = 79/191 (41.36%), Postives = 108/191 (56.54%), Query Frame = 2
Query: 980 MLFELTCTTSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAA--AHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLKVVQLRPEPQVTVIDTDMEIELDLPEKARE 1546
MLF+L+ + + K+ +L G R THAGVLEF A++G IGLP KV SL + SR ++ + G E E A V V+YVRL K T+A+V P T L V EL+ MLE N++NHATL+ GD L VW RG+ F L+V+ L P VTVIDTD+ +++++PE+ E
Sbjct: 1 MLFQLSLLPA--------EGNKSKQLPAGA----RVTHAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDGSRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVIGLEPTQAVTVIDTDLTVDVEVPEEQTE 179
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: A0A068USR7_COFCA (C2H2-type domain-containing protein n=4 Tax=Coffea TaxID=13442 RepID=A0A068USR7_COFCA) HSP 1 Score: 127 bits (319), Expect = 6.860e-27 Identity = 84/249 (33.73%), Postives = 124/249 (49.80%), Query Frame = 2
Query: 818 QARKQEEADQIRTAGISYKESLLAVTAEGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLKVVQLRPEPQVTVIDTDMEIEL----DLPEKAREQL 1552
+A +Q E D++ G+ + L A+ +G GDKI LPPS LS Q A GP+ F L+ ++ E + RTTHAGVLEF ADEG++G+P V +L A +P V VRYV L K TFA++ P+ G S + +A+LE ++R HATL+ GD L V ++L V++L+P V+V++TD+E+++ PEKA Q+
Sbjct: 61 KANQQMEEDRLVGRGVIFSRMLEAMPYQGNGDKIKLPPSCFSELSEQGAFDKGPLHFSLSVIV----------KDDLSETMNSGSQNRRTTHAGVLEFTADEGSVGVPPHVWSNLFPAETSMLPM----------------------------VEVRYVWLPKGTFAKLQPDEYGFSDIPNHKAVLETSLRQHATLSEGDMLRVNHGALTYNLHVLELKPSSSVSVLETDIEVDIIGSDSNPEKANHQV 271 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7074.18153.1 >prot_Ecto-sp13_S_contig7074.18153.1 ID=prot_Ecto-sp13_S_contig7074.18153.1|Name=mRNA_Ecto-sp13_S_contig7074.18153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=387bp MLFELTCTTSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGTback to top mRNA from alignment at Ecto-sp13_S_contig7074:4407..7769- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7074.18153.1 ID=mRNA_Ecto-sp13_S_contig7074.18153.1|Name=mRNA_Ecto-sp13_S_contig7074.18153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7074:4407..7769- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7074:4407..7769- >mRNA_Ecto-sp13_S_contig7074.18153.1 ID=mRNA_Ecto-sp13_S_contig7074.18153.1|Name=mRNA_Ecto-sp13_S_contig7074.18153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1161bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7074:4407..7769- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |