mRNA_Ecto-sp13_S_contig7074.18153.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7074.18153.1
Unique NamemRNA_Ecto-sp13_S_contig7074.18153.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: D7FT74_ECTSI (UBX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT74_ECTSI)

HSP 1 Score: 723 bits (1867), Expect = 1.290e-252
Identity = 390/451 (86.47%), Postives = 395/451 (87.58%), Query Frame = 2
Query:  842 DQIRTAGISYKESLLAVTAEGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLK-------------------VVQLRPEPQVTVIDTDMEIELDLPEKAREQLQEKGAQDRAKTLRAHMGAATTSSRGSSPTQSLSXXXXXXXXXXXXXXXXXXXXXRDTSTTGLSPMDDSESDXXXDLDSDDEGSTAGGPKKPAFDLEKHRLAKFQQLPDEPPRDAEGVFTCQLRTTEGKFTRRFRFADALGVLLDFCEAQGGVPGQYRLVMPFPRRVLTRDDASAGTTLREAGLTSKQESVILERL 2137
            DQIRTAGISYKESLLAVTA+GEGDKILLPPSALE LSRQDAVGLGPMLFELTCTTSG APT+QQQ EKAP L GGT TTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISAN DPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGD+LSVWRRGKEFSLK                   VV+LRPEPQVTVIDTDMEIELDLPEKAREQLQEKGAQDRAKTLRAHMGAAT SSRGSSPTQSLS                     RDTSTTGLSPMDDSESD   DLDSDDE ST GGPKK AFDLEKHRLAKFQQLP+EPPRD EGVFTCQLRTTEGKFTRRFRFADALGVLLDFCEAQGGVPGQYRLVMPFPRRVLTRDDASAGTTL EAGLTSKQESVILERL
Sbjct:   71 DQIRTAGISYKESLLAVTADGEGDKILLPPSALECLSRQDAVGLGPMLFELTCTTSGAAPTSQQQPEKAPALQGGTITTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANDDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDHLSVWRRGKEFSLKSEDSHSPLTPEREPPLTMQVVELRPEPQVTVIDTDMEIELDLPEKAREQLQEKGAQDRAKTLRAHMGAATISSRGSSPTQSLSPPPSGRGYAVGGKGSSVAAGGRDTSTTGLSPMDDSESDDDSDLDSDDERSTPGGPKKGAFDLEKHRLAKFQQLPEEPPRDEEGVFTCQLRTTEGKFTRRFRFADALGVLLDFCEAQGGVPGQYRLVMPFPRRVLTRDDASAGTTLHEAGLTSKQESVILERL 521          
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: A0A4D9CT31_9STRA (UBX domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CT31_9STRA)

HSP 1 Score: 178 bits (452), Expect = 7.650e-45
Identity = 108/237 (45.57%), Postives = 143/237 (60.34%), Query Frame = 2
Query:  854 TAGISYKESLLAVTAEGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAA--AHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLKVVQLRPEPQVTVIDTDMEIELDLPEKAREQLQE 1558
            TAGI+Y   L   T  GEGDKI+LPPSALE+L++QDA+ LGPMLF+L+   +        +  K+ +L  G     R THAGVLEF A++G IGLP KV  SL+       +  SR   E +   G  E      PA      V V+YVRL K T+A+V P T  L  V EL+ MLE N++NHATL+ GD L VW RG+ F L+V  L P   VTVIDTD+ +++++PE+  E+ +E
Sbjct:   71 TAGITYSCDLWPYTVSGEGDKIILPPSALETLTQQDALALGPMLFQLSLLPA--------EGNKSKQLPAGA----RVTHAGVLEFSAEDGRIGLPLKVRKSLVAEPEETREDGSRGMKERVEGPGGEEGDSRASPAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVTGLEPTQAVTVIDTDLTVDVEVPEEQTERERE 295          
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: A0A7S3XVE0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVE0_HETAK)

HSP 1 Score: 130 bits (328), Expect = 1.560e-31
Identity = 71/141 (50.35%), Postives = 91/141 (64.54%), Query Frame = 2
Query: 1085 TTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLKVVQLRPEPQVTVIDTD 1507
            TTH GVLEF A+EG +GLP KV+ SL G A  Q                +N + +  A   +  V ++Y+RL KATFA++ PE  GLSQ+ E+RA+LEHNMRNHATL++GD L VW RGK F  +V++LRP    TVIDTD
Sbjct:   14 TTHCGVLEFTAEEGCVGLPPKVLASL-GIAPEQ----------------DNTQHQGVAPSSVGQVQIKYIRLEKATFAKIRPEKAGLSQIDEIRAVLEHNMRNHATLSLGDKLIVWFRGKAFECEVLELRPAAACTVIDTD 137          
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: A0A1V9YQB9_9STRA (UBX domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQB9_9STRA)

HSP 1 Score: 127 bits (319), Expect = 2.770e-27
Identity = 87/242 (35.95%), Postives = 127/242 (52.48%), Query Frame = 2
Query:  830 QEEADQIR----TAGISYKESLLAVTAEGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLKVVQLRPEPQVTVIDTDMEIELDLPEKA 1540
            QEE D++     T GISY+++L AV  + +GDKI LP SALE+L+ Q+A+ +G + FELTC  + T                        THA VLEFVADEG+IG+P K+ +SL       +P  + D                        + VR+VRLAK  F ++ P   G      + +A+LE  ++ H TLT GD L V + G  F + V  +RPEPQV +++ D+E+++ LP +A
Sbjct:   61 QEELDRLEEERVTGGISYRKTLRAVPIDNDGDKITLPVSALEALNPQNALDMGVLSFELTCPLATTK-----------------------THASVLEFVADEGSIGIPPKIAMSL-----RLMPLDSVD------------------------IDVRFVRLAKGQFVQLQPLADGFGDRQLDFKALLERTLKTHTTLTEGDILLVRQGGVTFDVAVRAIRPEPQVKILNVDLEVDV-LPSEA 249          
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: A0A3R7KPJ2_9STRA (UBX domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KPJ2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.980e-27
Identity = 96/250 (38.40%), Postives = 132/250 (52.80%), Query Frame = 2
Query:  821 ARKQEEA--DQIRTAGISYKESLLAVTAEGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVS-ELRAMLEHNMRNHATLTVGDYLSVWRRGKE-FSLKVVQLRPEPQVTVIDTDMEIELDLPEKAREQLQE 1558
            AR+++ A  +Q  T GI Y + L+ V   G+GDKI LP SALE L+ Q+A+ LG   FEL+    G      QQ E    L          THAGVLEFVADEGT+GLP KV  SL     H +P                           E++ VR+VRL K  FAR+     G      + + MLE ++R+H TL VGD L V R G+E F + V +L+PE  V +++TD+E+++ +P +A  Q +E
Sbjct:   60 ARQEQHALEEQRLTGGIKYLQQLIPVPTTGDGDKITLPVSALEELNPQNALELGVFTFELSYEEHG------QQGENERIL----------THAGVLEFVADEGTVGLPPKVAASLFQQTEH-LP---------------------------ESIRVRFVRLEKGKFARLQARGDGFGDRQIDFKHMLERSLRSHTTLMVGDVLFV-RHGRETFEVVVAELKPEAAVNILNTDLEVDI-VPSEAATQAKE 263          
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: A0A7J9FTA0_9ROSI (Uncharacterized protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J9FTA0_9ROSI)

HSP 1 Score: 120 bits (301), Expect = 4.450e-27
Identity = 75/222 (33.78%), Postives = 116/222 (52.25%), Query Frame = 2
Query:  860 GISYKESLLAVTAEGEGDKILLPPSALESLSRQDAVGLGPMLFELTCT-TSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLKVVQLRPEPQVTVIDTDMEIEL 1522
            G+ + + L AV  +G GDKI LPPS    LS Q A   GPM F L+     G++ T   ++E             RTTH+GVLEF ADEG++ +P  V  +L    A  +P                             V VRYVRL+K T+A++ P+ +G S +   +A+LE ++R HATL+  D L+V      + L+V++L+P   ++V++TD+E+++
Sbjct:   10 GVVFYKILEAVPFQGSGDKIKLPPSCFTELSDQGAFDKGPMYFRLSLVHQEGSSATKDDEKEN-----------NRTTHSGVLEFTADEGSVAIPPHVWSNLFPMDAPNIPL----------------------------VEVRYVRLSKGTYAKLQPDGIGFSDLPNHKAILETSLRQHATLSQDDVLTVKYGELTYKLRVLELKPSSSISVLETDIEVDI 192          
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: I0YPZ2_COCSC (UBX domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YPZ2_COCSC)

HSP 1 Score: 125 bits (313), Expect = 4.830e-27
Identity = 126/416 (30.29%), Postives = 175/416 (42.07%), Query Frame = 2
Query:  911 DKILLPPSALESLSRQDAVGLGPMLFELTCTTSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQV--SELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLKVVQLRPEPQVTVIDTDMEIELDLPEKAREQL-QEKGAQDRAKTLRAHMGAATTSSRGSSPTQSLSXXXXXXXXXXXXXXXXXXXXXRDTSTTGLSPMDDSESDXXXDLDSDDEGSTAGGPKKPAFDLEKHRLAKFQQLPDEPPRDAEGVFTCQLRTTEG-KFTRRFRFADALGVLLDFCEAQGGV---PGQYRLVMPFPRRVLTRDDASAGTTLREAGLTSKQESVILERL 2137
            + +LLP S  + L RQDA   G  LFE+  ++  T            EL              VL F A EGTIG+P +V  +  G  A   P   +                         V V Y RL K  + R  P +    +    ++RA+LE  +  H+TL+ GD++SV   G  F L V +LRP   V+VIDT+ME E++   +  ++L QE+ A+  A   R    AA                                      +   L    ++E         + E +        A DLE+ R  K   LP EPP D E V +C +R   G +F+RRFR +D L  L DF +AQ G    PG YRLV  FPRRV+     +   TL + GL S+QE ++LE L
Sbjct:   61 EAVLLPASVGDDLMRQDAPKNGAQLFEIASSSGNTTHAGASLCRLMLELQPKRPLC-------VLAFTAAEGTIGMPPQVARNAFGDGASVSPEGAT-------------------------VDVLYRRLPKGEYVRFQPWSADFQREVGGDVRAVLEAALERHSTLSEGDWISVPFAGTAFDLTVQKLRPGRAVSVIDTEMEAEVEPSLETEQRLAQEEAARAEADRRREQELAAM-------------------------------------AQEALRQAAEAE---------EREKAEXXXXXXAAVDLERLRQEKAAALPPEPPAD-EAVTSCLIRLPNGARFSRRFRASDPLLHLFDFVDAQEGAGEGPGSYRLVAQFPRRVIGPHLPAPDATLADVGLASRQEVLLLEPL 397          
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: A0A2K1KSX3_PHYPA (C2H2-type domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KSX3_PHYPA)

HSP 1 Score: 129 bits (323), Expect = 5.890e-27
Identity = 81/223 (36.32%), Postives = 120/223 (53.81%), Query Frame = 2
Query:  860 GISYKESLLAVTAEGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGTAPTAQQQREKAPELH--GGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLKVVQLRPEPQVTVIDTDMEIEL 1522
            GI +     A+   G+GDKI LP S+ E LS Q A+  GPM FE++    G+ P+         E H   G ++  R+THAGVLEF A+EG + LP  V  +    A    P   S +NI                 G+    VRYVRL K T+A++ PE    + V   +A+LE  +R HA+LT GD L+V   G ++ L+V++L+P   V+V++TD+E+++
Sbjct:   75 GIIFNRVFKALLVAGKGDKIRLPASSFEQLSSQSAIDKGPMFFEVSAVHHGSRPSTSSSAASHLEQHEINGESSKPRSTHAGVLEFTAEEGVVELPPHVWHN----AGFSDPEYLS-KNIH---------------RGIPEARVRYVRLPKGTYAKLQPEGGDFADVFNHKAVLETELRQHASLTEGDLLTVHHGGVDYGLRVLELKPRTNVSVLETDLEVDV 277          
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: W7T6G4_9STRA (Ubiquitin fusion degradaton n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6G4_9STRA)

HSP 1 Score: 123 bits (309), Expect = 6.040e-27
Identity = 79/191 (41.36%), Postives = 108/191 (56.54%), Query Frame = 2
Query:  980 MLFELTCTTSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAA--AHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLKVVQLRPEPQVTVIDTDMEIELDLPEKARE 1546
            MLF+L+   +        +  K+ +L  G     R THAGVLEF A++G IGLP KV  SL        +  SR  ++ +   G  E    E  A      V V+YVRL K T+A+V P T  L  V EL+ MLE N++NHATL+ GD L VW RG+ F L+V+ L P   VTVIDTD+ +++++PE+  E
Sbjct:    1 MLFQLSLLPA--------EGNKSKQLPAGA----RVTHAGVLEFSAEDGRIGLPLKVRKSLEAEPEETREDGSRGMEKRMEGPGGEEGDSRESSAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVIGLEPTQAVTVIDTDLTVDVEVPEEQTE 179          
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Match: A0A068USR7_COFCA (C2H2-type domain-containing protein n=4 Tax=Coffea TaxID=13442 RepID=A0A068USR7_COFCA)

HSP 1 Score: 127 bits (319), Expect = 6.860e-27
Identity = 84/249 (33.73%), Postives = 124/249 (49.80%), Query Frame = 2
Query:  818 QARKQEEADQIRTAGISYKESLLAVTAEGEGDKILLPPSALESLSRQDAVGLGPMLFELTCTTSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANGDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYLSVWRRGKEFSLKVVQLRPEPQVTVIDTDMEIEL----DLPEKAREQL 1552
            +A +Q E D++   G+ +   L A+  +G GDKI LPPS    LS Q A   GP+ F L+             ++   E     +   RTTHAGVLEF ADEG++G+P  V  +L  A    +P                             V VRYV L K TFA++ P+  G S +   +A+LE ++R HATL+ GD L V      ++L V++L+P   V+V++TD+E+++      PEKA  Q+
Sbjct:   61 KANQQMEEDRLVGRGVIFSRMLEAMPYQGNGDKIKLPPSCFSELSEQGAFDKGPLHFSLSVIV----------KDDLSETMNSGSQNRRTTHAGVLEFTADEGSVGVPPHVWSNLFPAETSMLPM----------------------------VEVRYVWLPKGTFAKLQPDEYGFSDIPNHKAVLETSLRQHATLSEGDMLRVNHGALTYNLHVLELKPSSSVSVLETDIEVDIIGSDSNPEKANHQV 271          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7074.18153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT74_ECTSI1.290e-25286.47UBX domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9CT31_9STRA7.650e-4545.57UBX domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S3XVE0_HETAK1.560e-3150.35Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1V9YQB9_9STRA2.770e-2735.95UBX domain-containing protein n=1 Tax=Achlya hypog... [more]
A0A3R7KPJ2_9STRA2.980e-2738.40UBX domain-containing protein n=3 Tax=Phytophthora... [more]
A0A7J9FTA0_9ROSI4.450e-2733.78Uncharacterized protein n=2 Tax=Gossypium TaxID=36... [more]
I0YPZ2_COCSC4.830e-2730.29UBX domain-containing protein n=1 Tax=Coccomyxa su... [more]
A0A2K1KSX3_PHYPA5.890e-2736.32C2H2-type domain-containing protein n=1 Tax=Physco... [more]
W7T6G4_9STRA6.040e-2741.36Ubiquitin fusion degradaton n=1 Tax=Nannochloropsi... [more]
A0A068USR7_COFCA6.860e-2733.73C2H2-type domain-containing protein n=4 Tax=Coffea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7074contigEcto-sp13_S_contig7074:4407..7769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score647.9
Seed ortholog evalue3e-183
Seed eggNOG ortholog2880.D7FT74
Preferred nameubxn8
Model size2643
KEGG koko:K14016,ko:K18726
KEGG Pathwayko04141,map04141
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.ER-associated misfolded protein catabolic process
EggNOG OGsCOG5140@1,KOG1363@1,KOG1363@2759,KOG1816@2759
Ec32 ortholog descriptionUbiquitin fusion degradation protein UFD1
Ec32 orthologEc-06_003840.1
Cds size1161
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463970.4773552-UTR-Ecto-sp13_S_contig7074:4406..49091681463970.4773552-UTR-Ecto-sp13_S_contig7074:4406..4909Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7074 4407..4909 -
1681463970.5213697-UTR-Ecto-sp13_S_contig7074:6760..75991681463970.5213697-UTR-Ecto-sp13_S_contig7074:6760..7599Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7074 6761..7599 -
1681463970.5319946-UTR-Ecto-sp13_S_contig7074:7629..77691681463970.5319946-UTR-Ecto-sp13_S_contig7074:7629..7769Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7074 7630..7769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463970.4931338-CDS-Ecto-sp13_S_contig7074:4909..55901681463970.4931338-CDS-Ecto-sp13_S_contig7074:4909..5590Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7074 4910..5590 -
1681463970.5103202-CDS-Ecto-sp13_S_contig7074:6280..67601681463970.5103202-CDS-Ecto-sp13_S_contig7074:6280..6760Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7074 6281..6760 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7074.18153.1prot_Ecto-sp13_S_contig7074.18153.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7074 4910..6760 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7074.18153.1

>prot_Ecto-sp13_S_contig7074.18153.1 ID=prot_Ecto-sp13_S_contig7074.18153.1|Name=mRNA_Ecto-sp13_S_contig7074.18153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=387bp
MLFELTCTTSGTAPTAQQQREKAPELHGGTTTTTRTTHAGVLEFVADEGT
IGLPRKVVLSLLGAAAHQVPSRTSDENISANGDPENAKAERPAVEGLENV
VVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDYLSV
WRRGKEFSLKVVQLRPEPQVTVIDTDMEIELDLPEKAREQLQEKGAQDRA
KTLRAHMGAATTSSRGSSPTQSLSPPPSGGGYVVGGKGSSVAAGGRDTST
TGLSPMDDSESDDDSDLDSDDEGSTAGGPKKPAFDLEKHRLAKFQQLPDE
PPRDAEGVFTCQLRTTEGKFTRRFRFADALGVLLDFCEAQGGVPGQYRLV
MPFPRRVLTRDDASAGTTLREAGLTSKQESVILERL*
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mRNA from alignment at Ecto-sp13_S_contig7074:4407..7769-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7074.18153.1 ID=mRNA_Ecto-sp13_S_contig7074.18153.1|Name=mRNA_Ecto-sp13_S_contig7074.18153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7074:4407..7769- (Ectocarpus species13 EcNAP12_S_4_19m)
TAGTGGGGAGGGGTCACCCACAAAACAACCCGGTGACACCAAGTGACGAG GCAGGTGGATGCGCCGGCGATAGGCCTTTTTTCACATGCTTTCGTCCCTC GCAAACTCGTTTCCCAGCATCTTGTCGCCTAGCGGTCTGTTATCGACTAC TCGTATCACACGAGTGGCGCCATGCGCACAGCGCCGGAGGCATCCCTTGT CATTGCCGCTGCTTGAGTGTGGGAACGGGTCACCGAAGAACGAAACTGGT CATACGGCAAACAGCCATCTCCAGCAGCGATAGGGATAGGTCTTTAGTTA CAGCGTGTCGACACTACCAGCTCGATTTTCGAACCTCCTTTGGCCTCACA GTCTCCATCATCGGCCCTTCAAGAGACAGCATACTCACATCTAGGGGGGA TACCTTTAAGCCGTTGCTGTTGTGGCCTGCTTCGAAATACCAAATCGGTG GTGGGGTACACACAACGAGTGCAGCGTTGGAGCGCTTTTTTTCATCGACC GCAGTGTTCGAGTTGAGAAACCAAAAAAAAGCTTTACAACAAGGACGGTC CTGTCCCAAATGCCAAAGAAGGACGAGGTTTTCTTTGCCGCGCACAAATT GCCCGAGATGATTTCAGCATTCAAGAACTAGCAAACATTTGTGATTTGGA TCAAATCACCTGTACGTACGCCAAAGCATGTAAGGGGCACGCTCGTCGCC CGAAGAGGGAAGCATTTTAGAGCCTCGGCTTGGTTCCGACAGAATGAAGC GGAAGAACTCACCTATCTTGTTCGGGGTTTGAATTTTTCCTGTTCCCTTT TCTGGTGGGAATTGTTCGTAACCGATCTCGTTTGCCGTGTAACCCAACAG GCGAGGAAACAGGAAGAGGCGGATCAAATCCGAACTGCCGGCATCAGCTA CAAGGAGTCTCTCCTGGCGGTCACAGCGGAAGGCGAGGGGGACAAGATTC TCCTGCCACCATCCGCCCTAGAATCCCTTTCCAGGCAGGACGCGGTTGGC CTTGGACCCATGCTGTTCGAACTCACTTGCACCACCTCCGGTACCGCTCC CACTGCTCAGCAGCAGCGGGAAAAGGCCCCGGAATTGCACGGCGGCACGA CGACAACAACCCGAACGACGCACGCCGGGGTGTTGGAATTCGTCGCCGAC GAGGGCACTATCGGACTTCCTCGAAAAGTGGTGCTCAGCCTTTTGGGGGC TGCCGCACACCAGGTGCCGTCCCGCACGAGCGACGAAAACATCAGTGCGA ACGGCGACCCAGAAAATGCGAAGGCTGAGAGGCCGGCGGTGGAAGGGCTC GAGAACGTGGTGGTGAGGTATGTCCGCCTCGCGAAGGCCACTTTCGCGAG GGTGGTACCGGAGACGGTGGGACTGTCCCAGGTATCGGAGCTGAGAGCGA TGTTGGAGCATAACATGCGCAACCATGCGACGTTGACGGTTGGGGATTAC CTGAGCGTGTGGAGACGAGGAAAGGAGTTCAGCCTGAAGGTGAGAAGTAT GACTGGAGTAGAGTGAACCGTCTCTCGAGGGTACAGAACAAGCGCCGGGA AGTCAGCATCATTGTGGTGGCGGGGTGTTTCATGTTTGGTTGCGGACGCT GCCGAGTATCCAGATGATTGTTTGCGCTACTGTCAGCAGGAGGTGCCGTC CGAAAAGTGGGTTGTGATTTGAATGGTCTTGTTGGAGTGACAGGGTTTTC GTTCCGGAATGCTTCGCTGCGTTTCGTTTCTATTTCCCCCAATGGCACGC GTCGAAGTCTTTAGTCTAGGTCTAGACATCTCGGCAGCGTTGTGTCCGAT CACGCGACACACGTGCAACTTGCGCGCACGGCGTGTTACCGTTGTATGTT AACTAAACATTTTGGCGCACGGCCTGAACGATGCCGTCGTGATGTTTCGA GGCTTGGTGAAACGTGAACCCCCCTAGCTGCAATCCAATCACATCCGCAT GCAGAGATCTGGACAACACTGAAGACGTACTTTATTTGTGTTCAGGGGGG TAGGGGCGTGAGAAAACTCTGTTAAACCGGCGGATATTCGATGCTTCGCA ACCGACGGCGCGGACGATTCTTACCTCTCGCTCTCGCTACTGTAGGCGCT CGGTAGTGATAAAAAGAGTGAAAAATAAACTCCCACTCCCCGATCACCCC CGAACGCGAACCGCTTCGGAACAACGCAGGTGGTTCAGCTGCGCCCTGAG CCTCAGGTAACCGTGATCGACACCGACATGGAGATAGAGCTAGACTTGCC GGAAAAGGCGAGAGAACAGCTCCAGGAAAAGGGTGCGCAAGACCGAGCGA AGACCTTGCGCGCGCACATGGGCGCCGCAACGACCTCATCCCGCGGCTCT TCCCCGACGCAGAGCTTGTCCCCGCCCCCATCTGGAGGAGGATACGTCGT GGGGGGCAAGGGTTCATCGGTAGCGGCAGGTGGCAGGGACACCAGCACAA CCGGGCTTTCCCCGATGGATGACAGCGAAAGCGATGACGATTCAGACCTC GACTCCGATGACGAGGGATCGACAGCCGGAGGTCCGAAGAAACCCGCCTT CGACCTCGAAAAGCACCGCCTGGCCAAGTTCCAGCAACTCCCGGATGAGC CGCCTAGAGATGCGGAAGGCGTGTTCACCTGTCAGCTAAGGACTACCGAG GGGAAGTTCACGAGGCGCTTCCGTTTCGCAGACGCCTTGGGAGTGTTGTT GGATTTTTGTGAAGCCCAAGGCGGCGTCCCGGGTCAGTACAGGCTGGTCA TGCCGTTCCCGAGAAGGGTTTTGACAAGAGATGATGCATCGGCGGGCACG ACGTTGCGCGAAGCAGGGCTCACCTCGAAGCAGGAATCGGTGATTTTGGA GAGACTCTAAATGTATGCAAAGCCAGATTGTTGTTGTATTAGTTATGTCT GTTTTTCTCTCCCGACCGTGATCTGACGCTCAGGTGGTTGTTGGTGTTTC CTGCTTTTGATTGACGTGATTGCGTCACCGCTGACGTTGGGCGAAAGCGC AGCATCTGTAGGTCTTGCGGAGGTCACTTGCCGGCGTATGGGTACATTCG GCTTTTGTTTTGTTCTCATACTTTTTGTGTACATTCGGGAGGTGTGTCCG TCGAGTGATTGACTGTGGAGGCCGTTTAGCGCGCTTTGGAGGCGCAACAG CCCTCGGAATCCTTGTCTGTGTTTGTGGTGGTCCCTCGGTGAACGTGGAA CGTAATGCGTCAAGTAGATGTCAATTAGAAAACAATGGTAGGCTTTGTAC AGAAAAAGGCCGGCGAGGAAGCTTGAGCATCGATTCAGCACAAAGTTGTT GAACATTTGTTCGCCTGCCCAAAACCAGGGAAAGAGGGGAAATGCCGCGG TTTGTCCAGCTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7074:4407..7769-

>mRNA_Ecto-sp13_S_contig7074.18153.1 ID=mRNA_Ecto-sp13_S_contig7074.18153.1|Name=mRNA_Ecto-sp13_S_contig7074.18153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1161bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7074:4407..7769- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGTTCGAACTCACTTGCACCACCTCCGGTACCGCTCCCACTGCTCA
GCAGCAGCGGGAAAAGGCCCCGGAATTGCACGGCGGCACGACGACAACAA
CCCGAACGACGCACGCCGGGGTGTTGGAATTCGTCGCCGACGAGGGCACT
ATCGGACTTCCTCGAAAAGTGGTGCTCAGCCTTTTGGGGGCTGCCGCACA
CCAGGTGCCGTCCCGCACGAGCGACGAAAACATCAGTGCGAACGGCGACC
CAGAAAATGCGAAGGCTGAGAGGCCGGCGGTGGAAGGGCTCGAGAACGTG
GTGGTGAGGTATGTCCGCCTCGCGAAGGCCACTTTCGCGAGGGTGGTACC
GGAGACGGTGGGACTGTCCCAGGTATCGGAGCTGAGAGCGATGTTGGAGC
ATAACATGCGCAACCATGCGACGTTGACGGTTGGGGATTACCTGAGCGTG
TGGAGACGAGGAAAGGAGTTCAGCCTGAAGGTGGTTCAGCTGCGCCCTGA
GCCTCAGGTAACCGTGATCGACACCGACATGGAGATAGAGCTAGACTTGC
CGGAAAAGGCGAGAGAACAGCTCCAGGAAAAGGGTGCGCAAGACCGAGCG
AAGACCTTGCGCGCGCACATGGGCGCCGCAACGACCTCATCCCGCGGCTC
TTCCCCGACGCAGAGCTTGTCCCCGCCCCCATCTGGAGGAGGATACGTCG
TGGGGGGCAAGGGTTCATCGGTAGCGGCAGGTGGCAGGGACACCAGCACA
ACCGGGCTTTCCCCGATGGATGACAGCGAAAGCGATGACGATTCAGACCT
CGACTCCGATGACGAGGGATCGACAGCCGGAGGTCCGAAGAAACCCGCCT
TCGACCTCGAAAAGCACCGCCTGGCCAAGTTCCAGCAACTCCCGGATGAG
CCGCCTAGAGATGCGGAAGGCGTGTTCACCTGTCAGCTAAGGACTACCGA
GGGGAAGTTCACGAGGCGCTTCCGTTTCGCAGACGCCTTGGGAGTGTTGT
TGGATTTTTGTGAAGCCCAAGGCGGCGTCCCGGGTCAGTACAGGCTGGTC
ATGCCGTTCCCGAGAAGGGTTTTGACAAGAGATGATGCATCGGCGGGCAC
GACGTTGCGCGAAGCAGGGCTCACCTCGAAGCAGGAATCGGTGATTTTGG
AGAGACTCTAA
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