mRNA_Ecto-sp13_S_contig70611.18134.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70611.18134.1
Unique NamemRNA_Ecto-sp13_S_contig70611.18134.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig70611.18134.1 vs. uniprot
Match: D7FJS7_ECTSI (MAP kinase phosphatase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS7_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.110e-48
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 1
Query:    1 FMYQAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQ 234
            FMY+AFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQ
Sbjct:   96 FMYKAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQ 173          
BLAST of mRNA_Ecto-sp13_S_contig70611.18134.1 vs. uniprot
Match: A0A6H5L2L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L8_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 2.540e-46
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1
Query:    1 FMYQAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQ 234
            FMYQAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQ
Sbjct:  216 FMYQAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQ 293          
BLAST of mRNA_Ecto-sp13_S_contig70611.18134.1 vs. uniprot
Match: A0A7S4DF41_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DF41_HETAK)

HSP 1 Score: 99.4 bits (246), Expect = 1.340e-24
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 FMYQAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRR 231
            FMYQAFDF++ A   RGR LVHCV+GVSRSC LA A+LM  + + YD+A   VR  R + +PN GF C LLEWQ+ R
Sbjct:  100 FMYQAFDFIEGARRARGRCLVHCVEGVSRSCALAAAYLMWRQTLPYDQALQAVRAARGVASPNIGFACQLLEWQKLR 176          
BLAST of mRNA_Ecto-sp13_S_contig70611.18134.1 vs. uniprot
Match: A0A7S2V0L7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0L7_9STRA)

HSP 1 Score: 102 bits (253), Expect = 6.260e-24
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 FMYQAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRR 231
            F+YQ+FDF+++  E  GRVLVHCV+GVSRSCT+ IA++ML +GV + EAY  VR  R +C+PN  FI +LL WQ+ R
Sbjct:  147 FLYQSFDFIESCREAGGRVLVHCVEGVSRSCTVCIAYVMLHRGVKFPEAYEYVRHARNVCSPNAAFIAALLSWQKMR 223          
BLAST of mRNA_Ecto-sp13_S_contig70611.18134.1 vs. uniprot
Match: I0YS19_COCSC (MAP kinase phosphatase 1 (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YS19_COCSC)

HSP 1 Score: 86.7 bits (213), Expect = 9.600e-20
Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    4 MYQAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRR 231
            +Y  FDF++AA    GRVL+HC QGVSRS TLAIA+LM  +   +DE    V+  R +  PN GF C LL WQRRR
Sbjct:   34 LYNVFDFIEAARLNGGRVLLHCSQGVSRSATLAIAYLMWKRSRPFDEVLTSVKAIRGVANPNIGFTCQLLNWQRRR 109          
BLAST of mRNA_Ecto-sp13_S_contig70611.18134.1 vs. uniprot
Match: A0A250XQD1_9CHLO (Uncharacterized protein n=2 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XQD1_9CHLO)

HSP 1 Score: 91.3 bits (225), Expect = 1.030e-19
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    4 MYQAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQ 234
            +Y A +F+ +A +  GRVLVHC QGVSRS T+ IA+LM   G  YDE + +V++ R +  PN GF C LL+WQ+RRQ
Sbjct:  149 LYDALEFIDSALKAGGRVLVHCSQGVSRSATIVIAYLMWKTGGSYDEVFAKVKEARGVANPNIGFTCQLLQWQKRRQ 225          
BLAST of mRNA_Ecto-sp13_S_contig70611.18134.1 vs. uniprot
Match: A0A059LEA0_9CHLO (Uncharacterized protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LEA0_9CHLO)

HSP 1 Score: 88.2 bits (217), Expect = 2.640e-19
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    4 MYQAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRR 231
            +Y  FDF++ A +  GRVL+HC QGVSRS TLA+AW+M T+   Y+E +  V+  R I  PN GF+C L++W +R+
Sbjct:  142 LYDVFDFIRGALDGGGRVLIHCSQGVSRSVTLAVAWIMWTRRACYEEVFEDVKLHRGIANPNIGFVCQLMQWSKRQ 217          
BLAST of mRNA_Ecto-sp13_S_contig70611.18134.1 vs. uniprot
Match: E1ZFD5_CHLVA (Uncharacterized protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZFD5_CHLVA)

HSP 1 Score: 85.1 bits (209), Expect = 4.030e-19
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    4 MYQAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRR 231
            +Y  FDF++ A  + GRVL+HC QGVSRS +LAIA+LM  +   YD+ +L V+  R +  PN GFIC LL+W +RR
Sbjct:   34 LYDVFDFIEEAT-RGGRVLIHCSQGVSRSASLAIAYLMWRQAAVYDDVFLAVKAARGVTNPNIGFICQLLQWHKRR 108          
BLAST of mRNA_Ecto-sp13_S_contig70611.18134.1 vs. uniprot
Match: A0A7S2WVL7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVL7_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 4.900e-19
Identity = 38/78 (48.72%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    1 FMYQAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQ 234
            F+YQ  D +    +  G+VLVHCVQGVSRSC L+IA+ M ++   Y +A+  V++ RPIC+PN  FIC+L+EW+++R+
Sbjct:  278 FVYQVIDVIDQVRQAGGKVLVHCVQGVSRSCALSIAYSMWSQKFSYRDAFDFVKRCRPICSPNIAFICNLVEWEKQRK 355          
BLAST of mRNA_Ecto-sp13_S_contig70611.18134.1 vs. uniprot
Match: A0A2P6VKG1_9CHLO (Tyrosine-phosphatase MKP1-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VKG1_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 6.590e-19
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    4 MYQAFDFMKAAEE---------QRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYLRVRQGRPICAPNTGFICSLLEWQRRRQ 234
            +Y  FDF++AA             GRVLVHC QGVSRS +LAIA+LM  +G  YD+A+  V+  R +  PN GFIC LL+W +RRQ
Sbjct:  149 LYDVFDFIEAATSGAGGGAAGTSPGRVLVHCSQGVSRSASLAIAYLMWKRGTPYDDAFQEVKASRGVANPNIGFICQLLQWYKRRQ 234          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70611.18134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJS7_ECTSI1.110e-4898.72MAP kinase phosphatase 1 n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L2L8_9PHAE2.540e-46100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4DF41_HETAK1.340e-2458.44Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V0L7_9STRA6.260e-2457.14Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
I0YS19_COCSC9.600e-2053.95MAP kinase phosphatase 1 (Fragment) n=1 Tax=Coccom... [more]
A0A250XQD1_9CHLO1.030e-1951.95Uncharacterized protein n=2 Tax=Chlamydomonas eust... [more]
A0A059LEA0_9CHLO2.640e-1948.68Uncharacterized protein n=1 Tax=Helicosporidium sp... [more]
E1ZFD5_CHLVA4.030e-1951.32Uncharacterized protein (Fragment) n=1 Tax=Chlorel... [more]
A0A7S2WVL7_9STRA4.900e-1948.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2P6VKG1_9CHLO6.590e-1950.00Tyrosine-phosphatase MKP1-like n=1 Tax=Micractiniu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70611contigEcto-sp13_S_contig70611:173..697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score163.7
Seed ortholog evalue3.4e-38
Seed eggNOG ortholog2880.D7FJS7
Model size234
KEGG koko:K04459,ko:K21278
KEGG Pathwayko04010,ko04726,ko05418,map04010,map04726,map05418
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.phosphatase
EggNOG OGsCOG2453@1,KOG1716@2759
EC3.1.3.16,3.1.3.48
Cds size231
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463968.6896832-CDS-Ecto-sp13_S_contig70611:172..3201681463968.6896832-CDS-Ecto-sp13_S_contig70611:172..320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70611 173..320 -
1681463968.7024863-CDS-Ecto-sp13_S_contig70611:611..6941681463968.7024863-CDS-Ecto-sp13_S_contig70611:611..694Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70611 612..694 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463968.7150314-UTR-Ecto-sp13_S_contig70611:694..6971681463968.7150314-UTR-Ecto-sp13_S_contig70611:694..697Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig70611 695..697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70611.18134.1prot_Ecto-sp13_S_contig70611.18134.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70611 173..694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70611.18134.1

>prot_Ecto-sp13_S_contig70611.18134.1 ID=prot_Ecto-sp13_S_contig70611.18134.1|Name=mRNA_Ecto-sp13_S_contig70611.18134.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MYQAFDFMKAAEEQRGRVLVHCVQGVSRSCTLAIAWLMLTKGVDYDEAYL
RVRQGRPICAPNTGFICSLLEWQRRRQ
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mRNA from alignment at Ecto-sp13_S_contig70611:173..697-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70611.18134.1 ID=mRNA_Ecto-sp13_S_contig70611.18134.1|Name=mRNA_Ecto-sp13_S_contig70611.18134.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70611:173..697- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTATGTACCAGGCCTTTGACTTCATGAAGGCCGCGGAGGAGCAAAGAGG AAGGGTGCTGGTGCACTGCGTGCAAGGGGTTTCCAGGTGAGTTTGGGCGT TTGTTGTCGTCTGGTCTCAGGAGGGGGTTGTAGGGGCGTCAGGATGTGAT CTGTTCTGTTCCCGTGAAAAGTCTTAAGTAGTGCGCGGTTTGGTCACTAG CCGACTTTTGTTGGTTATAAGCAGAAGCGGCAGCAGTAGCGGCAATACAC GCAAGCGCGATGTTGAGTGGGCGGTTGCGAGCAGTTGCGCTTGTCATTGC GACCACGGTATCATGCTCATGAGACGACAATGTCATGTCTCCTAAACGAG CGTCCGCCTCTCTTCCCTCCCGCCCAGGTCGTGCACGCTGGCCATCGCGT GGCTGATGCTCACCAAGGGGGTAGACTACGACGAGGCGTACCTGAGGGTG CGCCAGGGCAGGCCGATCTGCGCGCCCAACACGGGCTTCATCTGCAGCCT CCTCGAGTGGCAGCGAAGAAGGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70611:173..697-

>mRNA_Ecto-sp13_S_contig70611.18134.1 ID=mRNA_Ecto-sp13_S_contig70611.18134.1|Name=mRNA_Ecto-sp13_S_contig70611.18134.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70611:173..697- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACCAGGCCTTTGACTTCATGAAGGCCGCGGAGGAGCAAAGAGGAAG
GGTGCTGGTGCACTGCGTGCAAGGGGTTTCCAGGTCGTGCACGCTGGCCA
TCGCGTGGCTGATGCTCACCAAGGGGGTAGACTACGACGAGGCGTACCTG
AGGGTGCGCCAGGGCAGGCCGATCTGCGCGCCCAACACGGGCTTCATCTG
CAGCCTCCTCGAGTGGCAGCGAAGAAGGCAG
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