mRNA_Ecto-sp13_S_contig70527.18122.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70527.18122.1
Unique NamemRNA_Ecto-sp13_S_contig70527.18122.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70527.18122.1 vs. uniprot
Match: A0A6H5JFL8_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL8_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.970e-20
Identity = 57/71 (80.28%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:   97 TPSPVAMMMPSHSDGGRSDDSRXXXXXXXXXXXXXXXG--NEACAKFNEQCGGQHYTGTTCCEAGLTCKHW 303
            TPSPVAMMMPSHS G  SDDS     XXXXXXXXX     NEACAKFNEQCGGQHYTGTTCCEAGLTCK W
Sbjct:  464 TPSPVAMMMPSHSHGDDSDDSYSGSSXXXXXXXXXSDDSRNEACAKFNEQCGGQHYTGTTCCEAGLTCKEW 534
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BLAST of mRNA_Ecto-sp13_S_contig70527.18122.1 vs. uniprot
Match: D7G832_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G832_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.570e-13
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1 
Query:  214 EACAKFNEQCGGQHYTGTTCCEAGLTCKHW 303
            EACAKFNEQCGGQHYTGTTCCEAGLTCKHW
Sbjct:  263 EACAKFNEQCGGQHYTGTTCCEAGLTCKHW 292
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70527.18122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFL8_9PHAE1.970e-2080.28CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G832_ECTSI1.570e-13100.00EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70527contigEcto-sp13_S_contig70527:297..599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size303
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionCellulose/chitin-binding protein
Ec32 orthologEc-11_000640.1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463967.732487-CDS-Ecto-sp13_S_contig70527:296..5991681463967.732487-CDS-Ecto-sp13_S_contig70527:296..599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70527 297..599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70527.18122.1prot_Ecto-sp13_S_contig70527.18122.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70527 297..599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70527.18122.1

>prot_Ecto-sp13_S_contig70527.18122.1 ID=prot_Ecto-sp13_S_contig70527.18122.1|Name=mRNA_Ecto-sp13_S_contig70527.18122.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
ATPAPAREATPAPVDEATPAPQAEAAPTPRVETPSPVAMMMPSHSDGGRS
DDSRDDSSDDSSDDSSDDSGNEACAKFNEQCGGQHYTGTTCCEAGLTCKH
W
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mRNA from alignment at Ecto-sp13_S_contig70527:297..599-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70527.18122.1 ID=mRNA_Ecto-sp13_S_contig70527.18122.1|Name=mRNA_Ecto-sp13_S_contig70527.18122.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70527:297..599- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTACCCCCGCCCCCGCGCGCGAGGCTACCCCCGCCCCCGTGGACGAGGC
TACCCCCGCTCCCCAGGCGGAAGCTGCGCCTACGCCTCGTGTGGAAACCC
CGAGTCCGGTGGCGATGATGATGCCGTCGCATTCTGACGGAGGCCGCAGT
GACGACAGCAGGGACGACAGCAGTGACGACAGCAGTGACGACAGCAGTGA
CGACAGCGGGAACGAGGCGTGCGCCAAGTTCAACGAGCAGTGCGGTGGGC
AGCACTACACTGGCACCACTTGCTGCGAAGCCGGACTAACCTGCAAGCAC
TGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70527:297..599-

>mRNA_Ecto-sp13_S_contig70527.18122.1 ID=mRNA_Ecto-sp13_S_contig70527.18122.1|Name=mRNA_Ecto-sp13_S_contig70527.18122.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70527:297..599- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTACCCCCGCCCCCGCGCGCGAGGCTACCCCCGCCCCCGTGGACGAGGC
TACCCCCGCTCCCCAGGCGGAAGCTGCGCCTACGCCTCGTGTGGAAACCC
CGAGTCCGGTGGCGATGATGATGCCGTCGCATTCTGACGGAGGCCGCAGT
GACGACAGCAGGGACGACAGCAGTGACGACAGCAGTGACGACAGCAGTGA
CGACAGCGGGAACGAGGCGTGCGCCAAGTTCAACGAGCAGTGCGGTGGGC
AGCACTACACTGGCACCACTTGCTGCGAAGCCGGACTAACCTGCAAGCAC
TGG
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