prot_Ecto-sp13_S_contig70527.18122.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig70527.18122.1
Unique Name	prot_Ecto-sp13_S_contig70527.18122.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	101

Homology

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BLAST of mRNA_Ecto-sp13_S_contig70527.18122.1 vs. uniprot
Match: A0A6H5JFL8_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL8_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.970e-20
Identity = 57/71 (80.28%), Postives = 57/71 (80.28%), Query Frame = 0

Query:   33 TPSPVAMMMPSHSDGGRSDDSRXXXXXXXXXXXXXXXG--NEACAKFNEQCGGQHYTGTTCCEAGLTCKHW 101
            TPSPVAMMMPSHS G  SDDS     XXXXXXXXX     NEACAKFNEQCGGQHYTGTTCCEAGLTCK W
Sbjct:  464 TPSPVAMMMPSHSHGDDSDDSYSGSSXXXXXXXXXSDDSRNEACAKFNEQCGGQHYTGTTCCEAGLTCKEW 534

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BLAST of mRNA_Ecto-sp13_S_contig70527.18122.1 vs. uniprot
Match: D7G832_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G832_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.570e-13
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0

Query:   72 EACAKFNEQCGGQHYTGTTCCEAGLTCKHW 101
            EACAKFNEQCGGQHYTGTTCCEAGLTCKHW
Sbjct:  263 EACAKFNEQCGGQHYTGTTCCEAGLTCKHW 292

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig70527.18122.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig70527.18122.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JFL8_9PHAE	1.970e-20	80.28	CBM1 domain-containing protein n=1 Tax=Ectocarpus ...	[more]
D7G832_ECTSI	1.570e-13	100.00	EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000254	Cellulose-binding domain, fungal	PFAM	PF00734	CBM_1	coord: 79..100 e-value: 2.0E-6 score: 27.6
IPR035971	Cellulose-binding domain superfamily	SUPERFAMILY	57180	Cellulose-binding domain	coord: 77..100

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig70527	contig	Ecto-sp13_S_contig70527:297..599 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig70527.18122.1	mRNA_Ecto-sp13_S_contig70527.18122.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig70527 297..599 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig70527.18122.1 ID=prot_Ecto-sp13_S_contig70527.18122.1|Name=mRNA_Ecto-sp13_S_contig70527.18122.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
ATPAPAREATPAPVDEATPAPQAEAAPTPRVETPSPVAMMMPSHSDGGRS
DDSRDDSSDDSSDDSSDDSGNEACAKFNEQCGGQHYTGTTCCEAGLTCKH
W

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000254	Cellulose-bd_dom_fun
IPR035971	CBD_sf