mRNA_Ecto-sp13_S_contig7047.18114.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7047.18114.1
Unique NamemRNA_Ecto-sp13_S_contig7047.18114.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7047.18114.1 vs. uniprot
Match: D7FKU0_ECTSI (Putative serine rich protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU0_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 6.010e-45
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 1
Query:    1 PVATEPTECQGKRGVSFDFKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIWGEKDLDSTRLAN 225
            PVATEPTEC GKRGVSFDFKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIWGEKDLDSTRLAN
Sbjct:  121 PVATEPTECHGKRGVSFDFKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIWGEKDLDSTRLAN 195          
BLAST of mRNA_Ecto-sp13_S_contig7047.18114.1 vs. uniprot
Match: A0A017T4U7_9DELT (Putative secreted protein n=2 Tax=Chondromyces apiculatus TaxID=51 RepID=A0A017T4U7_9DELT)

HSP 1 Score: 70.1 bits (170), Expect = 1.960e-12
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 1
Query:    1 PVATEPTECQGKRGVSFDFKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIWGEKDLDSTRLA 222
            P ++ PT C  KRGV++ +    D+ AL+PG+SWWYNW+          A  + G +Y+PM+WG   LD  R A
Sbjct:   77 PPSSHPTGC--KRGVAYGYHSTADMQALSPGVSWWYNWTHVPDEGVRPDAYETLGVDYVPMVWGGDGLDGARAA 148          
BLAST of mRNA_Ecto-sp13_S_contig7047.18114.1 vs. uniprot
Match: A0A1G1TJI2_9BACT (Glyco_hydro_cc domain-containing protein n=1 Tax=Hymenobacter coccineus TaxID=1908235 RepID=A0A1G1TJI2_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 2.570e-12
Identity = 34/75 (45.33%), Postives = 42/75 (56.00%), Query Frame = 1
Query:    1 PVATEPTECQGKRGVSFDFKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIWGEKDLDSTRLAN 225
            P  T+      KRGV++DF  A DL ALAPG+SWWY W+P I  + V       G E++PM W E    ST  AN
Sbjct:   25 PAPTQAQTKSPKRGVAYDFTSAADLQALAPGLSWWYGWAP-IPKAAVANTYQGLGSEFVPMQWDEILDGSTVTAN 98          
BLAST of mRNA_Ecto-sp13_S_contig7047.18114.1 vs. uniprot
Match: H8H0W5_DEIGI (F5/8 type C domain-containing protein n=2 Tax=Deinococcus TaxID=1298 RepID=H8H0W5_DEIGI)

HSP 1 Score: 69.3 bits (168), Expect = 4.560e-12
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    4 VATEPTECQGKRGVSFDFKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIW 189
            +  + T    KRG+++D   A DL ALAPG+SWWYNWSPA      + A S+ G +++PM+W
Sbjct:   35 LTAQATAKSAKRGLAYDLATAPDLAALAPGVSWWYNWSPAPNGGAPQNAASTYGMDFVPMVW 96          
BLAST of mRNA_Ecto-sp13_S_contig7047.18114.1 vs. uniprot
Match: A0A4Q5XY15_9DELT (Glyco_hydro_cc domain-containing protein n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A4Q5XY15_9DELT)

HSP 1 Score: 67.8 bits (164), Expect = 1.010e-11
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   13 EPTECQGKRGVSFDFKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIWG 192
            +P     KRG+++ +  ADDL AL+PGMSWWYNWSP   A    +  S S   ++PM WG
Sbjct:   28 DPATKSAKRGIAYGYHSADDLKALSPGMSWWYNWSPRPEAGAASVYTSES-VSFVPMAWG 86          
BLAST of mRNA_Ecto-sp13_S_contig7047.18114.1 vs. uniprot
Match: A0A250IPT7_9DELT (Carbohydrate-binding protein n=1 Tax=Melittangium boletus DSM 14713 TaxID=1294270 RepID=A0A250IPT7_9DELT)

HSP 1 Score: 68.2 bits (165), Expect = 1.150e-11
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   34 KRGVSFDFKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIWG 192
            KRG+ + +  A+D+ AL+PGMSWWYNWSP   A    +A SS G  ++PM+WG
Sbjct:   34 KRGLGYGYHSAEDMRALSPGMSWWYNWSPTPEAGAASVA-SSVGVSFVPMVWG 85          
BLAST of mRNA_Ecto-sp13_S_contig7047.18114.1 vs. uniprot
Match: A0A1H0RAM0_9RALS (Glycosyl hydrolase catalytic core n=5 Tax=Burkholderiaceae TaxID=119060 RepID=A0A1H0RAM0_9RALS)

HSP 1 Score: 67.8 bits (164), Expect = 1.220e-11
Identity = 27/73 (36.99%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    1 PVATEPTECQGKRGVSFDFKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIWGEKDLDSTRL 219
            P +T       KRG+++D     D+ ALAPG+SWWYNWSP   AS     +++ G +++PM+W +   D+  +
Sbjct:   57 PSSTPGVTKSAKRGIAYDLASKADVAALAPGVSWWYNWSPRPSASAPTDPRAAYGMDFVPMLWNDYAFDAATV 129          
BLAST of mRNA_Ecto-sp13_S_contig7047.18114.1 vs. uniprot
Match: A0A439EYP3_9BURK (Glyco_hydro_cc domain-containing protein n=1 Tax=Cupriavidus sp. UYMSc13B TaxID=1774746 RepID=A0A439EYP3_9BURK)

HSP 1 Score: 66.2 bits (160), Expect = 3.210e-11
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    1 PVATEPTECQG-KRGVSFDFKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIWGEK 198
            P A+ P   +  KRGV++D   A D  ALAPG+SWWYNW+    AS    A ++ G +YIPM+W ++
Sbjct:    6 PPASSPLGSKSAKRGVAYDLASAADFAALAPGVSWWYNWASQPNASAPADATAAYGMDYIPMLWNDQ 72          
BLAST of mRNA_Ecto-sp13_S_contig7047.18114.1 vs. uniprot
Match: UPI000AF5ACF6 (glycoside hydrolase family protein n=2 Tax=unclassified Cupriavidus TaxID=2640874 RepID=UPI000AF5ACF6)

HSP 1 Score: 66.6 bits (161), Expect = 3.220e-11
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 1
Query:    1 PVATEPTECQGKRGVSFDFKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIWGEKDLDSTRL 219
            P AT       KRG+++D     D+ ALAPG+SWWYNWSP    +     +++ G +++PM+W +   D+  +
Sbjct:   57 PAATPGVTKSAKRGIAYDLATTADVAALAPGVSWWYNWSPRPSPTAPVDTRTAYGMDFVPMLWNDYAFDAATV 129          
BLAST of mRNA_Ecto-sp13_S_contig7047.18114.1 vs. uniprot
Match: A0A1W1UGF4_9DEIO (F5/8 type C domain-containing protein n=1 Tax=Deinococcus hopiensis KR-140 TaxID=695939 RepID=A0A1W1UGF4_9DEIO)

HSP 1 Score: 65.9 bits (159), Expect = 7.630e-11
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 1
Query:    1 PVATEPTECQGKRGVSFDFKDADDLDALAPGMSWWYNWSPAIIASEVKIAQSSSGCEYIPMIW 189
            P AT P     KRG+++D   A DL ALAPG+SWWYNW  +  A   + A S+ G +++PM+W
Sbjct:   37 PQATGPKSA--KRGIAYDLSTAADLAALAPGVSWWYNWGSSPNAGAPQDAGSTYGMDFVPMLW 97          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7047.18114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKU0_ECTSI6.010e-4598.67Putative serine rich protein n=2 Tax=Ectocarpus Ta... [more]
A0A017T4U7_9DELT1.960e-1240.54Putative secreted protein n=2 Tax=Chondromyces api... [more]
A0A1G1TJI2_9BACT2.570e-1245.33Glyco_hydro_cc domain-containing protein n=1 Tax=H... [more]
H8H0W5_DEIGI4.560e-1245.16F5/8 type C domain-containing protein n=2 Tax=Dein... [more]
A0A4Q5XY15_9DELT1.010e-1146.67Glyco_hydro_cc domain-containing protein n=1 Tax=M... [more]
A0A250IPT7_9DELT1.150e-1150.94Carbohydrate-binding protein n=1 Tax=Melittangium ... [more]
A0A1H0RAM0_9RALS1.220e-1136.99Glycosyl hydrolase catalytic core n=5 Tax=Burkhold... [more]
A0A439EYP3_9BURK3.210e-1144.78Glyco_hydro_cc domain-containing protein n=1 Tax=C... [more]
UPI000AF5ACF63.220e-1135.62glycoside hydrolase family protein n=2 Tax=unclass... [more]
A0A1W1UGF4_9DEIO7.630e-1146.03F5/8 type C domain-containing protein n=1 Tax=Dein... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7047contigEcto-sp13_S_contig7047:7005..7784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score161.8
Seed ortholog evalue1.3e-37
Seed eggNOG ortholog2880.D7FKU0
Preferred nameTOS1
Model size225
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0003843,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005975,GO:0005976,GO:0006073,GO:0006074,GO:0006075,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009250,GO:0009272,GO:0009277,GO:0009987,GO:0010383,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0030312,GO:0033692,GO:0034406,GO:0034407,GO:0034410,GO:0034411,GO:0034637,GO:0034645,GO:0035251,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0051273,GO:0051274,GO:0051278,GO:0070589,GO:0070592,GO:0070879,GO:0070880,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071944,GO:0071966,GO:0071969,GO:0071970,GO:1901576
Exons2
EggNOG free text desc.Putative TOS1-like glycosyl hydrolase (DUF2401)
EggNOG OGs2CBPA@1,2QSI7@2759
Cds size225
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463967.2307427-CDS-Ecto-sp13_S_contig7047:7004..71081681463967.2307427-CDS-Ecto-sp13_S_contig7047:7004..7108Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7047 7005..7108 +
1681463967.241628-CDS-Ecto-sp13_S_contig7047:7663..77841681463967.241628-CDS-Ecto-sp13_S_contig7047:7663..7784Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7047 7664..7784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7047.18114.1prot_Ecto-sp13_S_contig7047.18114.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7047 7005..7784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7047.18114.1

>prot_Ecto-sp13_S_contig7047.18114.1 ID=prot_Ecto-sp13_S_contig7047.18114.1|Name=mRNA_Ecto-sp13_S_contig7047.18114.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
PVATEPTECQGKRGVSFDFKDADDLDALAPGMSWWYNWSPAIIASEVKIA
QSSSGCEYIPMIWGEKDLDSTRLAN
back to top

mRNA from alignment at Ecto-sp13_S_contig7047:7005..7784+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7047.18114.1 ID=mRNA_Ecto-sp13_S_contig7047.18114.1|Name=mRNA_Ecto-sp13_S_contig7047.18114.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7047:7005..7784+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGTGGCGACGGAACCAACCGAGTGTCAGGGCAAGAGGGGTGTGTCCTT TGACTTCAAGGATGCCGATGACTTGGACGCTCTAGCTCCCGGCATGTCGT GGTGGTGAGCTGATCCTAACGGTCTGGGGTGTGCAATCGGTGCTACAGCA GTAGTTTACACATGGAACGGTTTACTGTGTACTGTTGTAGGTCGCAGGTA TCAAAAGGTTTCAAGATCTCCAGGGGGTGTTTAGGTGTTCCACGCGTGTG TTTCGGTTATCCATGTTTTGACTGTACTGCAATCCCAAACCCGAGACTAC TTGCAGGAGATATTCCATACTGCAGTCCCTACATGAATAAAAACACGTAT AATAGTTTCAAAGAGTGGTGAGAACGAGTGCAGATTCCGGGTATTTACAT AGGTGCAATCAATCCTATAAATCTTCAACCAACACACCCCTTGCTTTGCG TTGATGAATCGACGTTGTAGAACATTCTGGAAGCCTGTGCAAACATCACA GTCTTTTTGGAGGACTTACGACGTTGAGTGGAAGGCGGTCCACCAATGTC CCGTTTCATGGGGCTCCTACGTTCCGAGCTCTGACTTCAGGAACGCTCTC GGATACAGGCCGCGGATCGCACGCTGACGTGCGTTTCCGACATCGCCTGT CGTTGGCAGGTACAACTGGAGCCCGGCCATCATAGCATCGGAGGTGAAGA TCGCTCAATCCTCGTCGGGTTGCGAGTACATCCCCATGATATGGGGCGAG AAGGACTTGGACTCGACGCGCTTGGCGAAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7047:7005..7784+

>mRNA_Ecto-sp13_S_contig7047.18114.1 ID=mRNA_Ecto-sp13_S_contig7047.18114.1|Name=mRNA_Ecto-sp13_S_contig7047.18114.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7047:7005..7784+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGTGGCGACGGAACCAACCGAGTGTCAGGGCAAGAGGGGTGTGTCCTT
TGACTTCAAGGATGCCGATGACTTGGACGCTCTAGCTCCCGGCATGTCGT
GGTGGTACAACTGGAGCCCGGCCATCATAGCATCGGAGGTGAAGATCGCT
CAATCCTCGTCGGGTTGCGAGTACATCCCCATGATATGGGGCGAGAAGGA
CTTGGACTCGACGCGCTTGGCGAAC
back to top