mRNA_Ecto-sp13_S_contig7047.18113.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7047.18113.1
Unique NamemRNA_Ecto-sp13_S_contig7047.18113.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7047.18113.1 vs. uniprot
Match: D7FKU1_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU1_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 2.360e-35
Identity = 113/135 (83.70%), Postives = 118/135 (87.41%), Query Frame = 1 
Query:    1 MIRSLIAAGANPNITSTQGLTPIGLAVNMGFDRCLAVLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKILTGSSPYPAKLRKRLTTNYKLDTPEGRCRQILLVSPAYKARSWQWPASTIATSA 405
            MIRSLIAAGANPNI STQGLTPIGLAVNMGFD        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  I T SSPY AKL+KRLTTNYKLDTPEGRCRQ++LV+ AY ARSWQWPAS +ATSA
Sbjct:  233 MIRSLIAAGANPNIISTQGLTPIGLAVNMGFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNIHTDSSPYAAKLQKRLTTNYKLDTPEGRCRQVMLVAKAYNARSWQWPASALATSA 367
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7047.18113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKU1_ECTSI2.360e-3583.70Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7047contigEcto-sp13_S_contig7047:36..470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score137.5
Seed ortholog evalue4.9e-30
Seed eggNOG ortholog2880.D7FKU1
Model size437
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size435
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463967.2025058-CDS-Ecto-sp13_S_contig7047:35..4701681463967.2025058-CDS-Ecto-sp13_S_contig7047:35..470Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7047 36..470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7047.18113.1prot_Ecto-sp13_S_contig7047.18113.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7047 36..470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7047.18113.1

>prot_Ecto-sp13_S_contig7047.18113.1 ID=prot_Ecto-sp13_S_contig7047.18113.1|Name=mRNA_Ecto-sp13_S_contig7047.18113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MIRSLIAAGANPNITSTQGLTPIGLAVNMGFDRCLAVLLRSGGSPHSNNS
TGPTLLQSAFLELYPTCLAFLLQAGANPEKILTGSSPYPAKLRKRLTTNY
KLDTPEGRCRQILLVSPAYKARSWQWPASTIATSANPDEQKEEDG
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mRNA from alignment at Ecto-sp13_S_contig7047:36..470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7047.18113.1 ID=mRNA_Ecto-sp13_S_contig7047.18113.1|Name=mRNA_Ecto-sp13_S_contig7047.18113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7047:36..470+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCCGCTCTCTCATCGCTGCCGGAGCCAACCCCAACATCACATCGAC
CCAAGGCCTCACACCGATCGGACTTGCCGTCAACATGGGATTCGACAGGT
GCCTGGCCGTTCTCTTGCGGTCCGGTGGGTCTCCGCATTCTAATAACAGT
ACTGGTCCCACCCTTCTCCAATCGGCATTCCTCGAGCTCTATCCTACCTG
CCTCGCGTTTCTCCTCCAAGCCGGGGCAAACCCCGAGAAAATACTCACGG
GCTCCTCACCCTATCCAGCGAAGCTGCGAAAGCGCTTGACCACAAATTAC
AAGCTCGACACGCCGGAGGGACGCTGTCGGCAAATTTTGCTCGTGTCCCC
GGCGTACAAGGCGCGCTCGTGGCAATGGCCGGCGTCTACTATCGCGACAT
CAGCAAACCCAGATGAGCAGAAGGAAGAGGACGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7047:36..470+

>mRNA_Ecto-sp13_S_contig7047.18113.1 ID=mRNA_Ecto-sp13_S_contig7047.18113.1|Name=mRNA_Ecto-sp13_S_contig7047.18113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7047:36..470+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCCGCTCTCTCATCGCTGCCGGAGCCAACCCCAACATCACATCGAC
CCAAGGCCTCACACCGATCGGACTTGCCGTCAACATGGGATTCGACAGGT
GCCTGGCCGTTCTCTTGCGGTCCGGTGGGTCTCCGCATTCTAATAACAGT
ACTGGTCCCACCCTTCTCCAATCGGCATTCCTCGAGCTCTATCCTACCTG
CCTCGCGTTTCTCCTCCAAGCCGGGGCAAACCCCGAGAAAATACTCACGG
GCTCCTCACCCTATCCAGCGAAGCTGCGAAAGCGCTTGACCACAAATTAC
AAGCTCGACACGCCGGAGGGACGCTGTCGGCAAATTTTGCTCGTGTCCCC
GGCGTACAAGGCGCGCTCGTGGCAATGGCCGGCGTCTACTATCGCGACAT
CAGCAAACCCAGATGAGCAGAAGGAAGAGGACGGG
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