mRNA_Ecto-sp13_S_contig7046.18111.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7046.18111.1
Unique NamemRNA_Ecto-sp13_S_contig7046.18111.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7046.18111.1 vs. uniprot
Match: D8LGI0_ECTSI (SFM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI0_ECTSI)

HSP 1 Score: 535 bits (1377), Expect = 1.210e-184
Identity = 313/328 (95.43%), Postives = 315/328 (96.04%), Query Frame = 1
Query:   70 MSEDADMKDAPEGVKAEEAEPMEKEAKNGDDMIPXXXXXXXXXXXXXASSGSDAIKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVAKKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEEAEKIEGMVAPKPSFVPRKMQMGGEPAAGAXXXXXXXXXPPAAKKVEVVYTPASDALLEARAAIATMSFGRAKSRLAGAKRRRGTPEEASAVDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHPAAYSSDKTLL 1053
            MSEDADMKDAPEGVKAEEAEP EKEAKNGDD + XXXXXXXXXXXXX  SGSDAIKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEA+RRARTMVVPTKTEDVAKKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEEAEKIEGMVAPKPSFVPRKMQMGGEPAAGA XXXXX   PPAAKKVEVVYTPASDALLEARAAIATMSFGRAKSRLAGAKRRRGTPEE SAVDRRAVETFSTMKNLAINSSQF DDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGV WHP AYSSDKTLL
Sbjct:    1 MSEDADMKDAPEGVKAEEAEPKEKEAKNGDDKMXXXXXXXXXXXXXXXXSGSDAIKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEADRRARTMVVPTKTEDVAKKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEEAEKIEGMVAPKPSFVPRKMQMGGEPAAGAAXXXXX---PPAAKKVEVVYTPASDALLEARAAIATMSFGRAKSRLAGAKRRRGTPEETSAVDRRAVETFSTMKNLAINSSQFADDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVTWHPEAYSSDKTLL 325          
BLAST of mRNA_Ecto-sp13_S_contig7046.18111.1 vs. uniprot
Match: A0A835YL38_9STRA (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL38_9STRA)

HSP 1 Score: 210 bits (535), Expect = 4.260e-59
Identity = 128/270 (47.41%), Postives = 168/270 (62.22%), Query Frame = 1
Query:  220 GSDAIKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVAKKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEEAEKIEGMVAPKPSFVPRKMQMGGEPAAGAXXXXXXXXXPPAAKKVEVVYTPASDALLEARAAIATMSFGRAKSRLAGAKRRRGTPEEASAVDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHPAA 1029
            G+ A++ A  +GNINIH    TE+M+LS  S+E Q +HA +L++VEA RRARTM VPT  E+VA+ LR+LGQP+RLFSE +AD+RERLR  +A  +++ E    +  ++A              EPA  A              K EVVYT A+  L+EAR  IA+ SF  A  RLA AKRRR     ASA D  A    + +K L IN S  GD+RPLSA++VSPDG  VAS +W+ + KLW++++L    V RGH ER+TGVAWHP A
Sbjct:   28 GASAVEKARASGNINIHDIAQTEVMELSAASREEQDKHAEMLRKVEAHRRARTMAVPTLPEEVARALRRLGQPIRLFSETLADVRERLREHLAQLQLDGEGDAAVASLLA------------AAEPAKAAAAAVEEG-------KAEVVYTVAAAPLIEAREVIASYSFAAAPQRLARAKRRRLDSAVASAEDAAAAAACTRLKGLVINVSAVGDERPLSAVRVSPDGSLVASAAWSGVAKLWNMKDLRPCGVFRGHKERLTGVAWHPRA 278          
BLAST of mRNA_Ecto-sp13_S_contig7046.18111.1 vs. uniprot
Match: A0A7S2WFU9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFU9_9STRA)

HSP 1 Score: 195 bits (495), Expect = 7.560e-54
Identity = 124/275 (45.09%), Postives = 164/275 (59.64%), Query Frame = 1
Query:  223 SDAIKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVAKKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEEAEKIEGMVAPKPSFVPRKMQMGGEPAAGAXXXXXXXXXPPAAKKVEVVYTPASDALLEARAAIATMSFGRAKSRLAGAKRRRGTPEEASAVDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRG---HSERVTGVAWHPAAYSS 1038
            S A++AAV+AGNINI +    E+++LS  S + Q  HA LL++VEAERRAR++VVPT  E+V ++LR +GQPVRLF EN+ADIRERLR FIA                         + Q+ G+ A G          P A +K   VY+ AS  L+EAR  I   S      R+AG KRRR + EE + VD  A ET+  M+ LAI++SQF D+RPL A + +P    VAS S    +KLWD E+LE + +L G   H+ER TG+AWHP A+ S
Sbjct:   17 SAALQAAVRAGNINIAEGGKMEVLELSATSLDEQDRHAVLLRRVEAERRARSIVVPTNPEEVRQQLRSIGQPVRLFGENLADIRERLREFIA-------------------------RRQLDGDEAPGMLTEPMEEDKPKAPEKKADVYSEASADLVEARQRIFDYSSTHTVERMAGVKRRRESAEERARVDESAKETYKDMRALAISASQFADERPLGACRCAPHADVVASASLAPYIKLWDTESLESKGILGGPGAHTERATGLAWHPQAFGS 266          
BLAST of mRNA_Ecto-sp13_S_contig7046.18111.1 vs. uniprot
Match: A0A2P4X876_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X876_9STRA)

HSP 1 Score: 174 bits (440), Expect = 7.850e-47
Identity = 111/284 (39.08%), Postives = 171/284 (60.21%), Query Frame = 1
Query:  211 ASSGSDA--IKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVAKKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEEAEKIEGMVAPKPSFVPRKMQMGGEPAAGAXXXXXXXXXPPAAKKVEVVYTPA-SDALLEARAAIA--TMSFGRAKSRLAGAKRRRGTPEEASAVDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHPAAYSSDKT 1047
            +SSG  A  ++AA++AGN+N+     TE+++LSE S+ AQ++HA+LL+++EAE+RAR + VPT  E+V ++LRQLG+P+ LF E  AD RERLR  ++  E+E EE   +  ++A       +++  G   +  A             ++ ++ Y P  ++ L  ARAAI   T +   A+ +    +R+    E A  VD+ A E ++T   +A  +SQ GD RPL++++ S DG  VA+GSW+ LVK+WD  +    KV RGH +RVTGVAWHP    S+ T
Sbjct:   28 SSSGRMASNLEAAIRAGNVNVSDNVETEVLELSESSRAAQEKHAQLLRRIEAEKRARNIAVPTSVEEVIRRLRQLGEPITLFGERPADRRERLREILSRLELEAEETGFVHQVLA---DIQKQEVGTGAGESGAATREERRAGRYTKPQEDQLFYVPIKNEKLKSARAAIFAHTTTVVGARLKRERQERQMSAEERARTVDQHAAELYATALKMANIASQNGDVRPLASVRFSADGNHVATGSWSSLVKVWDASSANEVKVFRGHEDRVTGVAWHPNNVFSEMT 308          
BLAST of mRNA_Ecto-sp13_S_contig7046.18111.1 vs. uniprot
Match: W2R6V2_PHYPN (SFM domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2R6V2_PHYPN)

HSP 1 Score: 177 bits (448), Expect = 9.210e-47
Identity = 112/278 (40.29%), Postives = 166/278 (59.71%), Query Frame = 1
Query:  223 SDAIKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVAKKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEEAEKIEGMVAPKPSFVPRKMQMGGEPAAGAXXXXXXXXXPPAAKKVEVVYTPA-SDALLEARAAIATMSFGRAKSRLAGAKR--RRGTPEEASAVDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHPAAYSSDKT 1047
            S  ++AA++AGN+N+     TE++ LSE S+ AQ++HA+LL+++EAE+RAR + VPT  E+V ++LRQLG+P+ LF E  AD RERLR  ++  E+E EE   +  ++A        + Q  G  AAGA         P   ++ ++ Y P  ++AL   RA I   +     +RL   ++  R    E A  +D  A E ++T   +A  +SQ GD RPL++++ S DG  VA+GSW+ LVK+WD  N    KV RGH +RVTGVAWHP +  S+ T
Sbjct:   34 SSNLEAAIRAGNVNVSDNVETEVLQLSESSRAAQEKHAQLLRRIEAEKRARNIAVPTIVEEVIRRLRQLGEPITLFGERPADRRERLREILSRLELEAEETGFVHEVLADI------QRQDAGAGAAGAEGAARKATKP---QEDQLFYVPIKNEALKGVRATIFAHTASVVGTRLKRERQEQRMSLEERARTIDHHAAELYATALKMANVASQNGDVRPLASVRYSADGAHVATGSWSSLVKIWDATNANEVKVFRGHEDRVTGVAWHPTSAFSEMT 302          
BLAST of mRNA_Ecto-sp13_S_contig7046.18111.1 vs. uniprot
Match: A0A3R7GQX6_9STRA (SFM domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GQX6_9STRA)

HSP 1 Score: 177 bits (450), Expect = 5.540e-46
Identity = 115/277 (41.52%), Postives = 167/277 (60.29%), Query Frame = 1
Query:  232 IKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVAKKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEEAEKIEGMVAP--KPSFVPRKMQMGGEPAAGAXXXXXXXXXPPAAKKVEVVYTPA-SDALLEARAAIA--TMSFGRAKSRLAGAKRRRGTPEEASAVDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHPAAYSSDKT 1047
            ++ A++AGN+N+     TE++ LSE S+ AQ++HA+LL+++EAE+RAR + VPT  E+V ++LRQLG+P+ LF E  AD RERLR  ++  E+E EE   +  ++A   K   VP     GGE  AG           P  ++ E+ Y P  +D L + RAAI   T S   A+ +    +++    E A  VD  A E ++T   +A  +SQ GD RPL++++ S DG  VA+GSW+ LVK+WD  N    KV RGH +RVTGVAWHP+   S+ T
Sbjct:   40 LETAMRAGNVNVSDNVETEVLQLSESSRAAQEKHAQLLRRIEAEKRARNIAVPTSVEEVIRRLRQLGEPITLFGERPADRRERLRGILSQLELEAEETGFVHQVLADIQKQGAVPG----GGETIAGETGAEADQSDKP--QEDELFYVPIKNDQLKKVRAAIFDHTTSIVGARLKRERQEKQMSEEERARTVDHHAAELYATTLRMANIASQNGDVRPLASVRYSADGAHVATGSWSSLVKVWDATNAAEIKVFRGHEDRVTGVAWHPSNTFSEMT 310          
BLAST of mRNA_Ecto-sp13_S_contig7046.18111.1 vs. uniprot
Match: A0A662XLR5_9STRA (SFM domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XLR5_9STRA)

HSP 1 Score: 175 bits (443), Expect = 5.820e-46
Identity = 121/279 (43.37%), Postives = 172/279 (61.65%), Query Frame = 1
Query:  232 IKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVAKKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEEAEKIEGMVAPKPSFVPRKMQMGGEPAAG--AXXXXXXXXXPPAAKKVE--VVYTPASDALLE-ARAAIATMSFGRAKSRLAGAKRRR--GTPEEASAVDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHPAAYSSDKT 1047
            ++AA++AGN+N+     TE++ LSE S+ AQ++HA+LL+++EAE+RAR + VPT  ++V ++LRQLG+PV LF E  AD RERLR  ++  E+E EE   +  ++A          + G  P AG  A XXXXXXXX    K  E  + Y P  +  L+ ARAAI   S     +RL   ++ +     E   AVDR A E ++T   +A  +SQ GD RPL++++ SPDG  VA+GSW+ LVK+WD  +    KV RGH +RVTG+AWHP    S+ T
Sbjct:   43 LEAAIRAGNVNVSDNVETEVLQLSESSRAAQEKHAQLLRRIEAEKRARNIAVPTSVDEVIRRLRQLGEPVTLFGERPADRRERLRELLSRLELEAEETGFVHQVLADI-------QKQGSAPGAGEEAAXXXXXXXXXXXXKPQEDQLFYVPIKNVELKNARAAIFAHSVSAGSARLKRERQEKQLSAEERTRAVDRHAAELYATAAKMANIASQNGDVRPLASVRYSPDGAHVATGSWSSLVKVWDATSAVEVKVFRGHEDRVTGLAWHPTNVFSEMT 314          
BLAST of mRNA_Ecto-sp13_S_contig7046.18111.1 vs. uniprot
Match: G4ZDF0_PHYSP (SFM domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZDF0_PHYSP)

HSP 1 Score: 172 bits (435), Expect = 7.340e-45
Identity = 109/276 (39.49%), Postives = 165/276 (59.78%), Query Frame = 1
Query:  232 IKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVAKKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEEAEKIEGMVAPKPSFVPRKMQMGGEPAAG-AXXXXXXXXXPPAAKKVEVVYTPA-SDALLEARAAIA--TMSFGRAKSRLAGAKRRRGTPEEASAVDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHPAAYSSDKT 1047
            ++AA++AGN+N+     TE++ LSE S+ AQ++HA+LL+++EAE+RAR + VPT  E+V ++LRQLG+P+ LF E  AD RERLR  ++  E+E EE     G V    + + ++    G PA G A             ++ ++ Y P  +D L  ARAA+   T S   A+ +    +++    E A  +D  A E ++T   +A  +SQ GD RPL++++ S DG  VA+GSW+ LVK+WD  N    KV RGH +RV+ VAWHP+   S+ T
Sbjct:   37 LEAAIRAGNVNVSDNVETEVLQLSESSRAAQEKHAQLLRRIEAEKRARNIAVPTSVEEVIRRLRQLGEPITLFGERPADRRERLREILSRLELEAEET----GFVHQVLADIQKQDGGAGAPAEGTAAGDEGAAGQASKPQEDQLFYVPIKNDGLKTARAAVFAHTTSVVGARLKRERQEKQMSAEERARTMDHHAAELYATALRMANIASQNGDVRPLASVRYSADGAHVATGSWSSLVKVWDANNAAEVKVFRGHEDRVSAVAWHPSNTFSEMT 308          
BLAST of mRNA_Ecto-sp13_S_contig7046.18111.1 vs. uniprot
Match: A0A3M6VKG6_9STRA (SFM domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKG6_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.020e-44
Identity = 115/282 (40.78%), Postives = 166/282 (58.87%), Query Frame = 1
Query:  232 IKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVAKKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEEAEKIEGMVAP--KPSFVPRKMQMGGEPAAGAXXXXXXXXXPPAAKKVEVVYTPA-SDALLEARAAIATMSFGRAKSRLAGAK-------RRRGTPEEASAVDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHPAAYSSDKT 1047
            ++AA++AGN+N+     TE+++LSE S+  Q++HA LL+++EAE+RAR +VVPT  E V ++LRQLG+P+ LF E  AD RERLR  ++  E+E+EE   +  ++A   +  F       G E  AG              ++ ++ Y P  +D L   RAAI    F  A SR+ GA+       R R   E A  VD  A E ++T   +A  +SQ GD RPLS+++ S DG  VA+GSW+ LVK+WD  +    KV RGH +R+TGVAWHP+   S+ T
Sbjct:   37 LEAAIRAGNVNVSDNVETEVLELSESSRAVQEKHAHLLRRIEAEKRARNIVVPTIVEVVIRRLRQLGEPITLFGERPADRRERLREILSRLELEEEETGFVHQVLADIQQQGF---GADAGVEKTAGRGETALDNVTK--LEENQLFYVPIQNDRLKNVRAAI----FSHA-SRVVGARLKRERQERNRSPEERARTVDHHAAELYTTALKMANIASQNGDVRPLSSVRYSADGAHVATGSWSSLVKIWDATSANEVKVFRGHEDRITGVAWHPSYTLSEMT 308          
BLAST of mRNA_Ecto-sp13_S_contig7046.18111.1 vs. uniprot
Match: M4B2G3_HYAAE (SFM domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B2G3_HYAAE)

HSP 1 Score: 171 bits (433), Expect = 1.370e-44
Identity = 111/282 (39.36%), Postives = 164/282 (58.16%), Query Frame = 1
Query:  211 ASSGSDAIKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVAKKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEEAEKIEGMVAPKPSFVPRKMQMGGEPAAGAXXXXXXXXXPPAAKKVEVVYTP-ASDALLEARAAIATMSFGRAKSRLAGAKRRRG--TPEEASAVDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHPAAYSSDKT 1047
            AS+ + + + A++ GN+N+     TE+++LSE S+ AQ++HA+LL++VEAE+RAR + VPT  E+V +KLRQLG+P+ LF E  AD RERLR  ++  ++E EE   +  +              G E AAGA            A + ++ Y P  ++ + + RA I   +     +RL   ++ R     E A  VD+ A   +S  + +A  +SQ GD RP+SA++ S DGG VA+GSW+ LVK+WD  N    KV RGH +RVTGVAWHP    S+ T
Sbjct:   27 ASTVNASGEVAIRVGNVNVSDAVETEVLELSESSRAAQEKHAQLLRRVEAEKRARNVAVPTVVEEVIRKLRQLGEPITLFGERPADRRERLREILSRLDVEAEENGYVRQVFGDIEKQEIAADAAGDERAAGAGETATGKLS--RAHESQLFYVPLTNEKMKKVRATIFAHASSATGARLKRERQERSMSAEERARTVDQYAAGLYSAAQKMANVASQNGDVRPISAVRFSADGGHVATGSWSSLVKVWDATNANEVKVFRGHEDRVTGVAWHPTKAFSEMT 306          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7046.18111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGI0_ECTSI1.210e-18495.43SFM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YL38_9STRA4.260e-5947.41Quinon protein alcohol dehydrogenase-like superfam... [more]
A0A7S2WFU9_9STRA7.560e-5445.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2P4X876_9STRA7.850e-4739.08U4/U6 small nuclear ribonucleoprotein Prp4 (Fragme... [more]
W2R6V2_PHYPN9.210e-4740.29SFM domain-containing protein n=14 Tax=Phytophthor... [more]
A0A3R7GQX6_9STRA5.540e-4641.52SFM domain-containing protein n=2 Tax=Phytophthora... [more]
A0A662XLR5_9STRA5.820e-4643.37SFM domain-containing protein n=2 Tax=Nothophytoph... [more]
G4ZDF0_PHYSP7.340e-4539.49SFM domain-containing protein n=5 Tax=Phytophthora... [more]
A0A3M6VKG6_9STRA1.020e-4440.78SFM domain-containing protein n=2 Tax=Peronospora ... [more]
M4B2G3_HYAAE1.370e-4439.36SFM domain-containing protein n=1 Tax=Hyaloperonos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7046contigEcto-sp13_S_contig7046:2..6065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score538.9
Seed ortholog evalue2e-150
Seed eggNOG ortholog2880.D8LGI0
Model size1166
KEGG koko:K12662
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015030,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0017069,GO:0017070,GO:0030532,GO:0030621,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046540,GO:0070013,GO:0071001,GO:0071005,GO:0071011,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Exons8
EggNOG free text desc.U4 snRNA binding
EggNOG OGsKOG0272@1,KOG0272@2759
Ec32 ortholog descriptionU4/U6 small nuclear ribonucleoprotein PRP4-like protein
Ec32 orthologEc-10_001990.1
Cds size1164
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7046.18111.1prot_Ecto-sp13_S_contig7046.18111.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7046 2..6065 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463967.0229347-CDS-Ecto-sp13_S_contig7046:1..921681463967.0229347-CDS-Ecto-sp13_S_contig7046:1..92Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7046 2..92 -
1681463967.0366743-CDS-Ecto-sp13_S_contig7046:743..8591681463967.0366743-CDS-Ecto-sp13_S_contig7046:743..859Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7046 744..859 -
1681463967.0470188-CDS-Ecto-sp13_S_contig7046:1067..11361681463967.0470188-CDS-Ecto-sp13_S_contig7046:1067..1136Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7046 1068..1136 -
1681463967.0579016-CDS-Ecto-sp13_S_contig7046:1567..17591681463967.0579016-CDS-Ecto-sp13_S_contig7046:1567..1759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7046 1568..1759 -
1681463967.069094-CDS-Ecto-sp13_S_contig7046:2292..24871681463967.069094-CDS-Ecto-sp13_S_contig7046:2292..2487Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7046 2293..2487 -
1681463967.0877924-CDS-Ecto-sp13_S_contig7046:3182..32611681463967.0877924-CDS-Ecto-sp13_S_contig7046:3182..3261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7046 3183..3261 -
1681463967.1000102-CDS-Ecto-sp13_S_contig7046:3509..36511681463967.1000102-CDS-Ecto-sp13_S_contig7046:3509..3651Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7046 3510..3651 -
1681463967.1178432-CDS-Ecto-sp13_S_contig7046:5785..60651681463967.1178432-CDS-Ecto-sp13_S_contig7046:5785..6065Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7046 5786..6065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7046.18111.1

>prot_Ecto-sp13_S_contig7046.18111.1 ID=prot_Ecto-sp13_S_contig7046.18111.1|Name=mRNA_Ecto-sp13_S_contig7046.18111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=388bp
HRPRWTATHCTASQLFHDHRATAMSEDADMKDAPEGVKAEEAEPMEKEAK
NGDDMIPPPASAAGGANNQSASSGSDAIKAAVKAGNINIHQQEHTEIMDL
SEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVAKKLRQLGQPVRLF
SENVADIRERLRRFIAASEMEDEEAEKIEGMVAPKPSFVPRKMQMGGEPA
AGAAGAAGAAGAPPAAKKVEVVYTPASDALLEARAAIATMSFGRAKSRLA
GAKRRRGTPEEASAVDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPD
GGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHPAAYSSDKTL
LATGAADKTAKLWDCHTGECVQTFHGHAGRLARVGFHP
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mRNA from alignment at Ecto-sp13_S_contig7046:2..6065-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7046.18111.1 ID=mRNA_Ecto-sp13_S_contig7046.18111.1|Name=mRNA_Ecto-sp13_S_contig7046.18111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6064bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7046:2..6065- (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGACCACGTTGGACTGCTACACATTGCACTGCCTCTCAGCTCTTCCA CGATCATCGGGCGACAGCCATGTCTGAAGATGCCGACATGAAGGATGCAC CGGAAGGTGTCAAAGCGGAGGAGGCTGAACCAATGGAGAAGGAGGCGAAG AACGGAGACGACATGATACCTCCGCCTGCTTCTGCTGCTGGCGGCGCCAA CAACCAGAGTGCATCGTCGGGATCGGACGCAATCAAGGCCGCGGTGAAAG CCGGCAACATCAACATACATCAACAAGAACGTGAGATTTCTGCTAGCAGT ATCGCCTAGGCTGGGATGCGCCTGTTTGTCCTTTGGTCCTAGGGGGCAGT GCAGCGAAGCCAGAAATCCAACAACCAGCAGCAAAGTTAGTTTACCTGTG ATGCAACGGAGCCCCCTCTCGGCTCGATCTTTGGGTGTGTGTCTCCTTGG TGTACTACCCGCGGCTTACTACACGCACCCAGGGATGTCATTATGCAACG AATGCGTTGGGGGGTGGGCACACCCTTCTCTGTTTTTATTATTCGGTGCC ACAACTTGAATGCAGGGTCATTTCTGCCCAATGGCCAAAGGAGATGAACT CAAAAACATGGTATAATACAGAATACAGCCGTGTGGTCCTGCTTCAGGTC ACGGACCAATAGCTTCGTTTACGCTGGGTCCGGCTACGAATTGAAGAGGC CGGCCGAAAAATAAGCTCTCCGTCCGAACGAGCATCATTTGGAGCCACGA CTACTGACATGCATACATTCTTGTCACCTTGCAGGCAAGGAAAAACTTGG CAAACCTACAGCAGTAAATCACCAGTTGAATGGGGCTCCGTCGAATCGGA GATGCCTCGCGTTTTGTGGGAGACCTCGGGGAAACCGGAAGTTGACGAAA GCGAAAACGTTGGCACGCAAACTAAGGGGTTGCAGAATAGTGTTGTTGAC GCTGGCTCTTTTCTCAACTTCAATCCAACACAAGAGAAAGAGAACGACCT TCCCGCCTGAACGTGGTAATTCGCAGTAAATCTCAGTAGAGGAGACCATC AAGAGCGTCGTGCGTGCTGGCACGTGCAGGTTTTCCACTGGAGCGAAACT ATCGAAGGTTGCAGCAGCCTCTGAAAACAGTCCGAAATCTGCGCCGGAAC CAAGCGGCATCCGACATTTGTCGCAGCCGTGCTCACCGCCACGGAATGTA ATCCCCTGAACGGAGGGTTGTCAGCAGTAGCTATTATAGAGGCATCAGCT ACTGCTGTGGACCCGCAGTTCAGCAGATTGGGGTCAGTGAGAGCGATCCC AAGCAGTAGAAGACACTGGGTATCGGTCTAGTTTGTGGAGATTTGCGGAG ATTGTTGGCCGTAGCAATGATGCTCAATATCACCACCACATAAGCAGATT TGAGCCCGCCAGCACGCACCCCCCGTTGCTATAGGATGTCCTCTAATGAT GTAAGTACTTACCTAATTATCAGGTTCTTGGCAACAAAGAGCTCATTTGA GCGCCTGCCGTTGTGGCTCTCTTGACTTGAATTTAGAGTTGATTGTTTTT TTTCTTGATTACAAAAGATGCGTGTGGAGGTAGACGCGTGAAATGCATGT TGTGAAAAGCCTCTACTGCCACCCTGTGCGAGAAGTAACGATTTCTGTTT TTCGCGATGCCTTCCGACTGGTCTTGTGTGCCTACTGTGCGTTTCTGCTG CTCTTGCGTTTTTTTTCAAAATTTGTCGATACCAAAGTTCGTGTTCTGCA ACCCTCAAGACCAATCCACCTCTACCCTTCGAAAATATATAAACCTTTGG AGTGGTGAATACACGTACATCTTTGTGTCTAGATACTGATTCTCGCAGCA AACAAGGCTGTGGGCCATGGGCCTTGCGAGAGAGAAGCAGAGGCAGAGGA AGGGAGAGAGAGAGCAGGCACACAAACCACGCCTGAAATGATTTGCGTTT GCGGTTGAGACCACCTCAAGCAGAAGAGTAGTCGTAACGCCACAGCTCTC CTGATGTTGAAAGTCCACATGCAACCTGTTTTCGTTTCAACCTTGCTCTC CGGGCAAACTTGGCTGCTGACCAGAACCATTGTCGATGGACACATCAATA CACTTGCGGATGAGTATCCTGGATTTGTCGGAGTAAAGAGAGCTTGGAGC AGCAGCAGGAGTGTAACACACGGGAGAGCGTTGTATCCCGTTCCCACAGA TGGTGCTGTCGACAAGAGCAGGCGGACAAGAACGGTAGCGTGTGTATCCC CCACCACTGCCACAGATCTTGAAGCTTTTCCACCCCGTGCGTAATTCCTT GCGAAGTATCTGACCGGACTCTACCTTGCTGCTTGACTTGGCTTGGCTTG GCTTGGCTTGGCTTGGCTTGGCTTGGCGCTGGCGCGATGCACCTTAACGC CACGTAATGATCAGACACGGAGATCATGGACCTCTCGGAGGAGAGCAAGG AGGCGCAGCAGGAGCACGCTCGGCTGCTCAAGCAGGTGGAGGCGGAGCGG CGCGCGAGGACCATGGTGGTGCCCACAAAGACCGAGGACGTCGCCAAGAA GCTCAGGTTTGTGCTTGGCCATCCCTCGGTGTGCGTGCCGCGTTCCCCCG AAGGAATTGGTGTGTTCACGTGTGCCCTCCCGCACATTGCAAACAAGGAG CGCTCCGGGTTTGACGGCACCAGACGCGGCTGTATCTCTGCCCTTGATTC TCGCATGCGGTTGCTGCCGCTTTGTCCGTTTGCTCGGTCCCCGTTCCTGT GCCTCTTTTCTTCTTCGTTGTCTTTTTGTTCGTCCCACCACCCCGAAACA ACAGGCAGCTGGGGCAGCCTGTTCGGCTCTTCTCGGAGAACGTCGCCGAC ATCCGGGAGCGCCTCCGGAGATTCATAGCGGCGGTAAGACCTGCCATTGC CTCGTCTCTCACGTGCGAGGAACTTAGCCACCAGTACACAGCATCCCCGC ACTTTTGCCTTTTTGTTGCCCCTCGGGAGAAACGCCGCGGCACCGAGGGA CTAATAACTGCGATTTTTTAAGTCTACTGTACCCCCGGAGTGCTGTTTTG TTTGTTCTACCTCGACCAAAGGGCGTTGGGGTTGGGGAAGGGTCACACAA ACGTGTGTGTGTGCAATTTTTTGTTTTGCTTTTTTTGTAGGTCCGTGTGG GTATGTTGTGTGTCTTGTGTCTTTTGCTTTAGCCGTAACTGTGCGTACTT CTTTCACAGTTTAGTCCGTCGAATTGAGTGGCAGGTCTTCTTGGTTTCTG CCTCCTACAAAAGCTTTGCGTGGCCGTGAAGCTAGCTGATGCCACCGATC GAAACCCAAAAGACAAGACAAGTCTTGCCCCGTCTACATCTTCTGATTTT TGTTTTTTCACAGGCGGAATGGTGATAACGAGAAAATCCAAACGCGGCTT CGATTCATCCCCTTCTCTCTCGCACGTATCCACTACGAACAAGAATGTAC CATTCAATTACCCCCCCCTCAGACGCCTTGGCATGCTACTGCCCAAATCT GCTCCAATAATGCGTACGAAAACGCCAACCGCATCTATCGTTGTGCATCG CTCGTATGCAACACGCACGTTTTCCCAGTCGGAGATGGAGGACGAGGAGG CCGAGAAAATCGAGGGCATGGTAGCCCCCAAGCCCTCTTTCGTGCCCAGG AAGATGCAGATGGGCGGCGAGCCGGCGGCGGGGGCGGCGGGAGCGGCGGG AGCGGCGGGGGCACCGCCGGCGGCGAAAAAAGTAGAGGTGGTTTACACCC CTGCTTCGGACGCCCTCCTGGAGGTAGGATGGTGTGATTGGTTAGCACGC GTTAGGGGTGTTCGGTTGGTGTTGGTCGTGTTGGCGTTGTAAATGTTGGG TTGTGGTGCTGTGGCGACCGTGAGATTTAGCTGTTGTGGTGTTGCAGATG CGAGGGTCGCGTAACGACGGCGTTTGGAACGGGCTCAAGTCGCAGCGCCG TCGGGTGATCGTATTCGCCTTCCCTGCCGCCCAGCACGACGTGCAGCCAG TATCCGAAAAAGATGGAAGCAAAGCAACATGTGACTTTTTTCTGCGTCGT GCACTTTGCACGGGGACTCGTTGCATCGCCGAAAGACAGTTCATCGCAAT TTTCCGTTCGGTGGCGTGCCAACAGCGGTCGCCCTGCCGGAGGCGGAGCG AAACGATATTTTAGGAATTATCCACGCCACCCCCCCGGTTTGCTCGGGCG TGCACGAGCAGTTGCTTTCAGTGACACGTGTTGTTTGGTCAGTCAGCCAG AGCAGGTGATGCTATTTGGCGTGTCTTTCCTCTCTCTCCCGCCTTGTGTG CGCTAGGCAAGAGCGGCCATCGCAACGATGTCGTTCGGGCGCGCCAAGAG CCGCCTGGCGGGGGCGAAACGGCGCCGGGGGACTCCCGAGGAGGCGTCAG CTGTGGACCGACGCGCGGTGGAAACGTTCTCGACGATGAAGAACCTAGCC ATCAACTCGAGTCAATTCGGGGACGACCGACCTCTGTCGGCAATACAGGT ATGCGTGCTGACGGCGATGTTGTTTTTGTTGTTGTTGTTGTTGTTGTGTT TTGTTGGCATTGTTGATGATCGAGTTAGTGGTGTGTGGTTGAAGTCGTTG GTCGTGGTGACCGTTGGGCGGGTGATGTCGTTGGCCGTGGTCGTTGTTGT TGTTATTGCTGTTGTTGTTGTTGTTGCTATTCCTGCTCGTTTTATTGTAG TAAATACTGTATCTGTCTGAGTCGCACGACATGTCGCTCGAGCTCGCGAC TGCTGCCAAGTGTTGCGTGACCTCGTACCGAAATTAGTTGTGTGTCGGGC GTATCTGAGCTTCTGGTTGCCATTCTAGTCTTGGAATGTCGGCATTTGAG AGCTGCTGCTGCTTCTTCTTCTTCTTGTACCGCTTCTTCTACTGCTGCTG ATCTCGCTCCTGCATCGCCCCTTTTTCAGGTCTCGCCGGACGGGGGCACC GTAGCGTCGGGAAGCTGGACCTGCCTGGTGAAGCTGTGGGACATAGAGGT AGGCAAGGCCGAACCATCCTTGCCTGTGAAGAGACTCACGGCTTCCACAT GAATATCTAGTATTTACAAGGATTTGTGGCGTCATATTTTTTTTTTCCCT TGGGTCGTCTTCTCGCCACTACGCCTCACGCATTTCCACAACGGTTTTTC TTTGCGAAGCCAATCTGCTCGTCTTTCTTTGCATCTTCCTGGACGATGTG CCGCAGAACCTGGAGATGCGCAAGGTACTGCGAGGGCACAGCGAGAGAGT GACCGGCGTCGCATGGCATCCGGCAGCCTACTCCTCGGACAAAACGTTGC TGGCAACCGGCGCCGCGGACAAGTGAGTCCGCTGTTGGTCGGCCTCGGGG GTGTTGCTCTCTTGCTTCCGTTTGTGGTTGGGTCCAGTTGTTTGCTGTAT TCGATGGTGTGGGTTTCGTCGGTCGCCGCTGCTACTCTTGCTGTTGCTCC AATGATCGTTGGGTTTCCGAAGTGAATGCTGGTTGTTGTGGTTGCTATGG TTGCTATTCTTTCCCGTCTTTCGTGGTGTTAACTGCGTCGTGTTGGGAAA CATTTGTTGTTTAGCTCGTGTTGAAAACAGCCCGTTACCTCGCTTTCGAG TCAAACCGAGCAGAGGAAAACTGCCAAGCGCCAGAGCGGCATGACTGCAA CGGGGATTCTCGTCCTTTACTCCCGCCTTCCAGTCCAGTGTCGAAATCGC TTCTTGTTGTAGCAATTCAAACCAAGCTCAAAAGAGAAAGGCAAAGGCTT TCTAAACCAACGGAATATCCCTCCGACTCCTTTCGGCCATGGCACACCCA TACACACCCATTTTCCTCTACCGCGGTCGCCATTGGCTACTCTCCCCGAA AGTATCCAAGACACACCAAGCGACAAAAGGCAACCGCCAGGGCCTTCCTT GCACACACGACCACCTGTGCCTGAATTCTTCGTACATAACGTAAGCATCC CAATTTAAACAAAAACCAAACAGGACGGCCAAGCTGTGGGACTGCCACAC GGGGGAGTGCGTGCAGACTTTTCACGGTCACGCGGGGCGGCTGGCGAGGG TGGGTTTCCACCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7046:2..6065-

>mRNA_Ecto-sp13_S_contig7046.18111.1 ID=mRNA_Ecto-sp13_S_contig7046.18111.1|Name=mRNA_Ecto-sp13_S_contig7046.18111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1164bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7046:2..6065- (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGACCACGTTGGACTGCTACACATTGCACTGCCTCTCAGCTCTTCCA
CGATCATCGGGCGACAGCCATGTCTGAAGATGCCGACATGAAGGATGCAC
CGGAAGGTGTCAAAGCGGAGGAGGCTGAACCAATGGAGAAGGAGGCGAAG
AACGGAGACGACATGATACCTCCGCCTGCTTCTGCTGCTGGCGGCGCCAA
CAACCAGAGTGCATCGTCGGGATCGGACGCAATCAAGGCCGCGGTGAAAG
CCGGCAACATCAACATACATCAACAAGAACACACGGAGATCATGGACCTC
TCGGAGGAGAGCAAGGAGGCGCAGCAGGAGCACGCTCGGCTGCTCAAGCA
GGTGGAGGCGGAGCGGCGCGCGAGGACCATGGTGGTGCCCACAAAGACCG
AGGACGTCGCCAAGAAGCTCAGGCAGCTGGGGCAGCCTGTTCGGCTCTTC
TCGGAGAACGTCGCCGACATCCGGGAGCGCCTCCGGAGATTCATAGCGGC
GTCGGAGATGGAGGACGAGGAGGCCGAGAAAATCGAGGGCATGGTAGCCC
CCAAGCCCTCTTTCGTGCCCAGGAAGATGCAGATGGGCGGCGAGCCGGCG
GCGGGGGCGGCGGGAGCGGCGGGAGCGGCGGGGGCACCGCCGGCGGCGAA
AAAAGTAGAGGTGGTTTACACCCCTGCTTCGGACGCCCTCCTGGAGGCAA
GAGCGGCCATCGCAACGATGTCGTTCGGGCGCGCCAAGAGCCGCCTGGCG
GGGGCGAAACGGCGCCGGGGGACTCCCGAGGAGGCGTCAGCTGTGGACCG
ACGCGCGGTGGAAACGTTCTCGACGATGAAGAACCTAGCCATCAACTCGA
GTCAATTCGGGGACGACCGACCTCTGTCGGCAATACAGGTCTCGCCGGAC
GGGGGCACCGTAGCGTCGGGAAGCTGGACCTGCCTGGTGAAGCTGTGGGA
CATAGAGAACCTGGAGATGCGCAAGGTACTGCGAGGGCACAGCGAGAGAG
TGACCGGCGTCGCATGGCATCCGGCAGCCTACTCCTCGGACAAAACGTTG
CTGGCAACCGGCGCCGCGGACAAGACGGCCAAGCTGTGGGACTGCCACAC
GGGGGAGTGCGTGCAGACTTTTCACGGTCACGCGGGGCGGCTGGCGAGGG
TGGGTTTCCACCCT
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