mRNA_Ecto-sp13_S_contig7043.18107.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7043.18107.1
Unique NamemRNA_Ecto-sp13_S_contig7043.18107.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7043.18107.1 vs. uniprot
Match: Q8QNB7_ESV1K (EsV-1-168 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB7_ESV1K)

HSP 1 Score: 324 bits (830), Expect = 5.210e-112
Identity = 151/166 (90.96%), Postives = 156/166 (93.98%), Query Frame = 1
Query:    1 MFNELVKFIPGINKHLFPKTTSAVHDGTRHVLTQDALTYEECEPFLPLRDGDVVFCPSCYDGDSFRLTWTDYSGYKSRIMGRLLGVDTPEIRGSSDKEKALALRAKQRLSDVIAGEFVTIRKPGNEKYGRALCDLQTDTLVSVSEYMLADPDICRPYDGGKKVDWD 498
            MFNELVKFIP INKH FPK  +AVHDGTR VL ++ LTYEECEPFLPLRDGDVVFCPSCYDGDSFRLTWTD SGYKSRIMGRLLGVDTPEIRGSSDKEKALALRAKQRLSDVI+GEFVTIRKPGNEKYGRALCDLQTDTL SVSEYM+ADPDICRPYDGGKKV WD
Sbjct:    1 MFNELVKFIPAINKHFFPKKNTAVHDGTRCVLAEEELTYEECEPFLPLRDGDVVFCPSCYDGDSFRLTWTDRSGYKSRIMGRLLGVDTPEIRGSSDKEKALALRAKQRLSDVISGEFVTIRKPGNEKYGRALCDLQTDTLASVSEYMIADPDICRPYDGGKKVSWD 166          
BLAST of mRNA_Ecto-sp13_S_contig7043.18107.1 vs. uniprot
Match: D8LPI6_ECTSI (EsV-1-168 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI6_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 4.390e-87
Identity = 127/166 (76.51%), Postives = 136/166 (81.93%), Query Frame = 1
Query:    1 MFNELVKFIPGINKHLFPKTTSAVHDGTRHVLTQDALTYEECEPFLPLRDGDVVFCPSCYDGDSFRLTWTDYSGYKSRIMGRLLGVDTPEIRGSSDKEKALALRAKQRLSDVIAGEFVTIRKPGNEKYGRALCDLQTDTLVSVSEYMLADPDICRPYDGGKKVDWD 498
            MF+ELVKFI  INK     + +AV  GT      + L YEECEPFLPLRDGDVVFCPSCYDGDSFRLTW D  G KSRIMGRL GVDTPE+ GSSDKEK LALRAKQRLSDVIAGEFVTIR PGNEKYGRALCDLQT  L SVS+YMLADP+ICRPYDGG+K+ WD
Sbjct:    1 MFDELVKFISAINK-----SGTAVPLGTLRASAAEELAYEECEPFLPLRDGDVVFCPSCYDGDSFRLTWIDGLGCKSRIMGRLAGVDTPEMNGSSDKEKVLALRAKQRLSDVIAGEFVTIRTPGNEKYGRALCDLQTAKLASVSDYMLADPEICRPYDGGRKLSWD 161          
BLAST of mRNA_Ecto-sp13_S_contig7043.18107.1 vs. uniprot
Match: B5LWN7_9PHYC (Putative nuclease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWN7_9PHYC)

HSP 1 Score: 139 bits (351), Expect = 2.220e-39
Identity = 62/138 (44.93%), Postives = 88/138 (63.77%), Query Frame = 1
Query:   82 TRHVLTQDALTYEECEPFLPLRDGDVVFCPSCYDGDSFRLTWTDYSGYKSRIMGRLLGVDTPEIRGSSDKEKALALRAKQRLSDVIAGEFVTIRKPGNEKYGRALCDLQTDTLVSVSEYMLADPDICRPYDGGKKVDW 495
            T  +   + L + EC  +LP+ +GD+VF    YDGD+  L W D++G   R   R+  +DTPE+RG S +E+ +A  AK+RL   I  +FVT+ +P ++KYGR L DL T+++ SVS YML  PDIC+ Y GGKK  W
Sbjct:    2 TGGIKMSEPLCFRECVRYLPVHEGDIVFVCRVYDGDTCTLAWVDHAGRSVRSSCRIRDIDTPEMRGKSPEERKMASLAKERLQSAILEKFVTVWRPSSDKYGRILADLSTESIRSVSTYMLEMPDICKSYTGGKKTPW 139          
BLAST of mRNA_Ecto-sp13_S_contig7043.18107.1 vs. uniprot
Match: Q6XLT1_9PHYC (FirrV-1-P2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT1_9PHYC)

HSP 1 Score: 134 bits (337), Expect = 2.040e-37
Identity = 59/132 (44.70%), Postives = 87/132 (65.91%), Query Frame = 1
Query:   91 VLTQDALTYEECEPFLPLRDGDVVFCPSCYDGDSFRLTWTDYSGYKSRIMGRLLGVDTPEIRGSSDKEKALALRAKQRLSDVIAGEFVTIRKPGNEKYGRALCDLQTDTLVSVSEYMLADPDICRPYDGGKK 486
            +LT     ++EC P++PL DGDVV+    YDGD+  + W D+ G K R+  R+  +DTPE+R  S  E+ LA++A+ +L D +  + VTI+ P ++KYGR L DLQTD   SV+++ML+  D+CRPY   KK
Sbjct:    3 ILTTQTFEFQECLPYVPLEDGDVVYVCKVYDGDTCTVAWIDHRGKKVRMSCRIRDIDTPEMRDKSVHERELAVQARDKLRDAVLHQHVTIKNPSSDKYGRILADLQTDHAPSVAQHMLSLTDLCRPYKKKKK 134          
BLAST of mRNA_Ecto-sp13_S_contig7043.18107.1 vs. uniprot
Match: A0A6C0DME7_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DME7_9ZZZZ)

HSP 1 Score: 80.5 bits (197), Expect = 6.060e-16
Identity = 53/155 (34.19%), Postives = 82/155 (52.90%), Query Frame = 1
Query:   52 PKTTSAVHDGTRHVLTQDALTYEECEPFLP-LRDGDVVFCPSCYDGDSFRLT--WTDYSGYKSRIMGRLLGVDTPEIRGSSDKEKALALRAKQRLSDVIAGEFVTIRKPGNEKYGRALCDLQTDTLVSVSEYMLADPDICRPYDGGKK---VDWD 498
            P   + + + T      +++ Y +  PF+P +  G V+     YDGD+  +     +  G   R   RLLG+D+PEI+G + KEK LA+ ++  LS +I G+ V +R    EKYGR L D+    L  ++E+ML +     PYDGG K    +WD
Sbjct:   20 PNKENLIIENTEITKYLNSIGYSDTLPFVPPINFGKVI---KVYDGDTITIAARLPNTLGPIYRFSVRLLGIDSPEIKGKTFKEKELAVISRDILSQLIMGKIVYLRNVSMEKYGRILADVYLGDL-HINEWMLKNG-YAIPYDGGTKHRPPEWD 169          
BLAST of mRNA_Ecto-sp13_S_contig7043.18107.1 vs. uniprot
Match: A0A6C0F345_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F345_9ZZZZ)

HSP 1 Score: 76.3 bits (186), Expect = 1.600e-14
Identity = 52/139 (37.41%), Postives = 79/139 (56.83%), Query Frame = 1
Query:  103 DALTYEECEPFLP-LRDGDVVFCPSCYDGDSF----RLTWTDYSGYKSRIMGRLLGVDTPEIRGSSDKEKALALRAKQRLSDVIAGEFVTIRKPGNEKYGRALCDLQTDTLVSVSEYMLADPDICRPYDGGKK---VDW 495
            D  T+    PF+P +  G V+     YDGD+     +L + +   Y+  +  RLLG+D+PEI+G SD EKALA +++  LS++I  + V ++    EKYGR L ++  + L  V+++ML D      YDGG K   VDW
Sbjct:   20 DDATWANTLPFVPPVTCGRVI---KVYDGDTITVASKLPFRNSPIYRFSV--RLLGIDSPEIKGHSDAEKALAKKSRDALSELIFEKNVVLKDVSTEKYGRLLANVYINDL-HVNKWML-DNKYAVEYDGGTKTRPVDW 151          
BLAST of mRNA_Ecto-sp13_S_contig7043.18107.1 vs. uniprot
Match: Q2SKK0_HAHCH (Micrococcal nuclease-like protein n=5 Tax=Hahella TaxID=158481 RepID=Q2SKK0_HAHCH)

HSP 1 Score: 75.9 bits (185), Expect = 2.050e-14
Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 1
Query:  157 VVFCPSCYDGDSFRLTWTDYSGYKSRIMG-RLLGVDTPEIRGSSDKEKALALRAKQRLSDVIAG-EFVTIRKPGNEKYGRALCDLQTDTLVSVSEYMLADPDICRPYDGGKKVDW 495
            V    S YDGD+FR    D+     + +G R+  +DTPE+RGS  KEKALAL+AKQ L + +   + V +     +KY R L D+  D   S+ + ++ +  +  PY+GG K+DW
Sbjct:   33 VAQVTSIYDGDTFRADIADWPAIVGQRIGVRIKHIDTPELRGSCKKEKALALKAKQFLVEKLRNAKQVKLENIQRDKYFRVLADVVADG-ESLGQSLIKEK-LAVPYEGGTKIDW 145          
BLAST of mRNA_Ecto-sp13_S_contig7043.18107.1 vs. uniprot
Match: A0A6C0HI73_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HI73_9ZZZZ)

HSP 1 Score: 74.7 bits (182), Expect = 8.150e-14
Identity = 47/132 (35.61%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  109 LTYEECEPFLP-LRDGDVVFCPSCYDGDSF----RLTWTDYSGYKSRIMGRLLGVDTPEIRGSSDKEKALALRAKQRLSDVIAGEFVTIRKPGNEKYGRALCDLQTDTLVSVSEYMLADPDICRPYDGGKKV 489
            ++Y+   PF+P +  G V+     YDGD+     RL ++  + Y  RI  RL G+DTPEI+G + KEK LA + +  L   +  + V ++   +EKYGR L D+  D  V ++E+M+      R Y GG K+
Sbjct:   33 ISYDNTVPFVPPVTYGKVI---KVYDGDTITIAARLPYSKSAIY--RIAVRLNGIDTPEIKGQTQKEKDLAKKIRDTLQTKLMNKIVQLKNTSSEKYGRLLADVYLDG-VCINEWMVEQGYAVR-YHGGTKI 157          
BLAST of mRNA_Ecto-sp13_S_contig7043.18107.1 vs. uniprot
Match: A0A6C0DSF6_9ZZZZ (TNase-like domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DSF6_9ZZZZ)

HSP 1 Score: 70.9 bits (172), Expect = 4.160e-12
Identity = 44/120 (36.67%), Postives = 70/120 (58.33%), Query Frame = 1
Query:  139 PLRDGDVVFCPSCYDGDSF----RLTWTDYSGYKSRIMGRLLGVDTPEIRGSSDKEKALALRAKQRLSDVIAGEFVTIRKPGNEKYGRALCDLQTDTLVSVSEYMLADPDICRPYDGGKK 486
            P+ +G V+     YDGD+     +L + +   Y+  +  RL G+DTPEI+G +D EKA A  A++ L ++I  + VT++    EKYGR L D+     VS++++ML D +    Y+GG K
Sbjct:   65 PITEGFVI---KVYDGDTITVASKLPYPNSPVYRFHV--RLNGIDTPEIKGKTDDEKAAAHHAQKALENLILHKTVTLKNLKTEKYGRILADVYLKK-VSLNKWML-DNNYAVKYEGGTK 177          
BLAST of mRNA_Ecto-sp13_S_contig7043.18107.1 vs. uniprot
Match: UPI001B4BFAD0 (thermonuclease family protein n=1 Tax=Bathymodiolus japonicus methanotrophic gill symbiont TaxID=113269 RepID=UPI001B4BFAD0)

HSP 1 Score: 69.3 bits (168), Expect = 5.070e-12
Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = 1
Query:  178 YDGDSFRLT---WTDYSGYKSRIMGRLLGVDTPEIRGSSDKEKALALRAKQRLSDVI-AGEFVTIRKPGNEKYGRALCDLQTDTLVSVSEYMLADPDICRPYDGGKKVDW 495
            YDGDSFR     W D  G    I  R+LGVDTPE+RG  ++EK +A +AKQ    ++ AG  + +      KY R L ++  D   S+ + +L++  + R YDGGK+  W
Sbjct:   30 YDGDSFRADINDWADIIGKSVPI--RILGVDTPEMRGKCEQEKFIARQAKQHAVALLRAGRVIELTNIQRGKYFRILANVIIDG-ESLGDSLLSNG-LARAYDGGKRAGW 135          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7043.18107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q8QNB7_ESV1K5.210e-11290.96EsV-1-168 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPI6_ECTSI4.390e-8776.51EsV-1-168 (Partial) (Fragment) n=1 Tax=Ectocarpus ... [more]
B5LWN7_9PHYC2.220e-3944.93Putative nuclease n=1 Tax=Feldmannia species virus... [more]
Q6XLT1_9PHYC2.040e-3744.70FirrV-1-P2 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A6C0DME7_9ZZZZ6.060e-1634.19TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0F345_9ZZZZ1.600e-1437.41TNase-like domain-containing protein n=1 Tax=viral... [more]
Q2SKK0_HAHCH2.050e-1438.26Micrococcal nuclease-like protein n=5 Tax=Hahella ... [more]
A0A6C0HI73_9ZZZZ8.150e-1435.61TNase-like domain-containing protein n=1 Tax=viral... [more]
A0A6C0DSF6_9ZZZZ4.160e-1236.67TNase-like domain-containing protein n=1 Tax=viral... [more]
UPI001B4BFAD05.070e-1239.09thermonuclease family protein n=1 Tax=Bathymodiolu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7043contigEcto-sp13_S_contig7043:6883..7383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score71.6
Seed ortholog evalue3.8e-10
Seed eggNOG ortholog349521.HCH_01990
Model size501
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Staphylococcal nuclease homologue
EggNOG OGs1N0I9@1224,1S8DU@1236,1XQ4E@135619,COG1525@1,COG1525@2
Cds size501
COG Functional cat.L
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463966.7552972-CDS-Ecto-sp13_S_contig7043:6882..73831681463966.7552972-CDS-Ecto-sp13_S_contig7043:6882..7383Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7043 6883..7383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7043.18107.1prot_Ecto-sp13_S_contig7043.18107.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7043 6883..7383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7043.18107.1

>prot_Ecto-sp13_S_contig7043.18107.1 ID=prot_Ecto-sp13_S_contig7043.18107.1|Name=mRNA_Ecto-sp13_S_contig7043.18107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=167bp
MFNELVKFIPGINKHLFPKTTSAVHDGTRHVLTQDALTYEECEPFLPLRD
GDVVFCPSCYDGDSFRLTWTDYSGYKSRIMGRLLGVDTPEIRGSSDKEKA
LALRAKQRLSDVIAGEFVTIRKPGNEKYGRALCDLQTDTLVSVSEYMLAD
PDICRPYDGGKKVDWD*
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mRNA from alignment at Ecto-sp13_S_contig7043:6883..7383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7043.18107.1 ID=mRNA_Ecto-sp13_S_contig7043.18107.1|Name=mRNA_Ecto-sp13_S_contig7043.18107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7043:6883..7383+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTAACGAACTTGTGAAATTCATACCTGGCATAAATAAACACTTGTT CCCAAAAACTACTAGTGCTGTCCACGACGGAACCCGGCATGTGTTGACAC AAGATGCACTAACGTACGAAGAGTGTGAACCTTTTCTTCCCCTCAGAGAT GGAGATGTTGTTTTCTGCCCGTCTTGTTACGATGGAGATAGCTTCCGCTT GACATGGACCGACTATTCGGGATACAAATCTAGGATTATGGGACGACTAC TCGGGGTGGACACACCGGAGATAAGGGGTTCATCGGATAAGGAGAAAGCC CTTGCACTGAGGGCAAAACAGAGACTAAGCGATGTGATCGCGGGAGAGTT TGTGACGATCCGTAAACCGGGTAATGAGAAATACGGAAGGGCCCTATGTG ACTTACAGACGGATACTCTTGTGTCTGTATCTGAATATATGCTTGCTGAC CCCGACATTTGTCGTCCTTATGATGGGGGGAAGAAGGTTGATTGGGATTA A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7043:6883..7383+

>mRNA_Ecto-sp13_S_contig7043.18107.1 ID=mRNA_Ecto-sp13_S_contig7043.18107.1|Name=mRNA_Ecto-sp13_S_contig7043.18107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7043:6883..7383+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTAACGAACTTGTGAAATTCATACCTGGCATAAATAAACACTTGTT
CCCAAAAACTACTAGTGCTGTCCACGACGGAACCCGGCATGTGTTGACAC
AAGATGCACTAACGTACGAAGAGTGTGAACCTTTTCTTCCCCTCAGAGAT
GGAGATGTTGTTTTCTGCCCGTCTTGTTACGATGGAGATAGCTTCCGCTT
GACATGGACCGACTATTCGGGATACAAATCTAGGATTATGGGACGACTAC
TCGGGGTGGACACACCGGAGATAAGGGGTTCATCGGATAAGGAGAAAGCC
CTTGCACTGAGGGCAAAACAGAGACTAAGCGATGTGATCGCGGGAGAGTT
TGTGACGATCCGTAAACCGGGTAATGAGAAATACGGAAGGGCCCTATGTG
ACTTACAGACGGATACTCTTGTGTCTGTATCTGAATATATGCTTGCTGAC
CCCGACATTTGTCGTCCTTATGATGGGGGGAAGAAGGTTGATTGGGATTA
A
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