mRNA_Ecto-sp13_S_contig7043.18102.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7043.18102.1 vs. uniprot
Match: Q8QKV3_ESV1K (EsV-1-163 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKV3_ESV1K) HSP 1 Score: 437 bits (1123), Expect = 1.040e-153 Identity = 216/254 (85.04%), Postives = 228/254 (89.76%), Query Frame = 1
Query: 1 SMLGLAKSLLLLLTTGLHCGHASLAVTTPEEDLVVVSGRTFTVRWNQ--AGSTSSRFAIDLYQYQSPYQLQHTSYSYSMDEDSCGTWVTSLCPYGERGCPDSTGDYDVVLPEPATDLPDSAYRIGVLGVEDGSFGCSDKFTLTTEEAASKNADTYFLVVTAPLDGDVAVIGRTYDVQFDYENGVGSSADMFDIDLFTSDCGTYVTGLCDQCKDSGGSHPIFIPMDTDADFYRIRVARVEDPFLFDCSGVFKVVD 756
+MLGLAKS+LLLLT+GLHCGHASL VTTPEEDLVVVSGRTFTVRWNQ +T SRFAIDLYQYQ SY+MDEDSCG+WVT+LCPYGERGCPDSTGDYDVVLPEPATDLPDS YRIGVLGVEDGSFGCSDKFTLTTE+A SK+ D YFL VTAP DGDVAVIG TY+VQF YENGVGSSAD+FDIDLFTSDCGTYV GLCDQCKDSGGSHPI IPMDTDADFYRIRVARVEDPFLFDCSGVF+VVD
Sbjct: 9 NMLGLAKSILLLLTSGLHCGHASLTVTTPEEDLVVVSGRTFTVRWNQDDGSTTYSRFAIDLYQYQ----------SYAMDEDSCGSWVTALCPYGERGCPDSTGDYDVVLPEPATDLPDSTYRIGVLGVEDGSFGCSDKFTLTTEQATSKDPDKYFLSVTAPADGDVAVIGDTYEVQFSYENGVGSSADVFDIDLFTSDCGTYVAGLCDQCKDSGGSHPIIIPMDTDADFYRIRVARVEDPFLFDCSGVFEVVD 252
BLAST of mRNA_Ecto-sp13_S_contig7043.18102.1 vs. uniprot
Match: D8LPI2_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI2_ECTSI) HSP 1 Score: 403 bits (1036), Expect = 3.940e-140 Identity = 205/257 (79.77%), Postives = 215/257 (83.66%), Query Frame = 1
Query: 1 SMLGLAKSLLLLLTTGLHCGHASLAVTTPEEDLVVVSGRTFTVRWNQ---AGSTSSRFAIDLYQYQSPYQLQHTSYSYSMDEDSCGTWVTSLCPYGERGCPDSTGDYDVVLPEPATDLPDSAYRIGVLGVEDGSFGCSDKFTLTTEEAASKNADTYFLVVTAPLDGDVAVIGRTYDVQFDYENGVGSSADMFDIDLFTSDCGTYVTGLCDQCKDSGGSHPIFIPMDTDADFYRIRVARVEDPFLFDCSGVFKVVDEF 762
+ML LAKS+LLLLTTGLH G ASL VTTPEEDLVVVSGRTFTVRWNQ +T RFAIDLYQYQ SYSMDEDSCGTW T+LCPYGE GC DSTGDYDVVLPEPA DL DSAYRIGVLGVEDGSFGCSDKF L TE AA ++D YFL VTAP DGDVAV G YDVQFD+ENGVGSSAD+FDIDLFTSDCGTYV GLC+QCKDSGGSH I IP DTDADFYRIRVAR EDPFLFDCSGVF+VVDEF
Sbjct: 9 NMLCLAKSILLLLTTGLHSGRASLTVTTPEEDLVVVSGRTFTVRWNQDDDGSTTPGRFAIDLYQYQ----------SYSMDEDSCGTWATALCPYGESGCLDSTGDYDVVLPEPAPDLSDSAYRIGVLGVEDGSFGCSDKFFLITEGAAPTDSDKYFLEVTAPADGDVAVTGHAYDVQFDFENGVGSSADVFDIDLFTSDCGTYVAGLCEQCKDSGGSHSISIPTDTDADFYRIRVARAEDPFLFDCSGVFEVVDEF 255
BLAST of mRNA_Ecto-sp13_S_contig7043.18102.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 216 bits (550), Expect = 1.090e-66 Identity = 119/240 (49.58%), Postives = 153/240 (63.75%), Query Frame = 1
Query: 67 SLAVTTPEEDLVVVSGRTFTVRWNQAGSTSSRFAIDLYQYQSPYQLQHTSYSYSMDEDSCGTWVTSLCPYGERGCPDSTGDYDVVLPEPATDLPDSAYRIGVLGVED-GSFGCSDKFTL-TTEEAASKNADT-YFLVVTAPLDGDVAVIGRTYDVQFDYENGVGSSADMFDIDLFTSD----CGTYVTGLCDQ----CKDSGGSHPIFIPMDTDADFYRIRVARVEDPFLFDCSGVFKVV 753
+L V TP DL+VV+ RT+TV W G+ S RF IDLY H S M EDSCG WVT+LCPYGE GCPD+ GDYD+V+PEP + +S Y++ V+ V D S CSD F L +E+A +++ YFL VT+P +GD A G Y V+FDY+NGVGS D F IDL+ +D CGTYVT +CD+ CKDS G + + IP DT+A Y+IRV R ED L+ CSG F ++
Sbjct: 19 ALEVVTPSADLIVVADRTYTVEWT--GADSGRFEIDLY---------HCG-SMCM-EDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIM 245
BLAST of mRNA_Ecto-sp13_S_contig7043.18102.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 201 bits (511), Expect = 7.960e-61 Identity = 113/245 (46.12%), Postives = 145/245 (59.18%), Query Frame = 1
Query: 46 GLHCGHASLAVTTPEEDLVVVSGRTFTVRWNQAGSTSSRFAIDLYQYQSPYQLQHTSYSYSMDEDSCGTWVTSLCPYGERGCPDSTGDYDVVLPEPATDLPDSAYRIGVLGVEDGS-FGCSDKFTLTTEEAASKNADT-YFLVVTAPLDGDVAVIGRTYDVQFDYENGVGSSADMFDIDLF----TSDCGTYVTGLCDQ----CKDSGGSHPIFIPMDTDADFYRIRVARVEDPFLFDCSGVFKV 750
G+ +L V +P+ + V++ R +TV W G+T+ RF IDLY S+ MD D CG WVT+LCPYG GCPDS GDYD+++PEP + S Y++ V ED S GCSD FTL E A + + Y L VT+P DGD A+ G Y V++DYENG GSS D F +DL+ T DCGTYVT LCDQ C DS G + + IP DT A Y IRV +D ++DCS F+V
Sbjct: 12 GMLSAANALEVVSPDGGISVLADRAYTVEWT--GTTTGRFEIDLYYCN----------SFCMD-DVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242
BLAST of mRNA_Ecto-sp13_S_contig7043.18102.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 198 bits (503), Expect = 1.900e-59 Identity = 114/250 (45.60%), Postives = 148/250 (59.20%), Query Frame = 1
Query: 37 LTTGLHCGHASLAVTTPEEDLVVVSGRTFTVRWNQAGSTSSRFAIDLYQYQSPYQLQHTSYSYSMD-EDSCGTWVTSLCPYGERGCPDSTGDYDVVLPEPATDLPDSAYRIGVLGVEDGSFG-CSDKFTL--TTEEAASKNADTYFLVVTAPLDGDVAVIGRTYDVQFDYENGVGSSADMFDIDLFTSD----CGTYVTGLCDQ----CKDSGGSHPIFIPMDTDADFYRIRVARVEDPFLFDCSGVFKV 750
L G+ +L V+TP + L V++ RT+TV W S+ +RF IDLY Y SM ED CG WVT+LCPYGE GCPD+ GDYD+V+PEP S Y++ V + D CSD+F L ++E + + D L VT+P GD+A Y V+FDY+NGVGSS D F IDL+ +D CGTYV +CD+ CKDS G + + IP DTDA Y+IRVAR ED L+ CSG F +
Sbjct: 9 LACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGT-SSDNRFEIDLY------------YCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245
BLAST of mRNA_Ecto-sp13_S_contig7043.18102.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 192 bits (488), Expect = 2.340e-57 Identity = 112/260 (43.08%), Postives = 147/260 (56.54%), Query Frame = 1
Query: 13 LAKSLLLLLTTGLHCGHASLAVTTPEEDLVVVSGRTFTVRWNQAGSTSSRFAIDLYQYQSPYQLQHTSYSYSMDEDSCGTWVTSLCPYGERGCPDSTGDYDVVLPEPATDLPDSAYRIGVLGVED-GSFGCSDKFTLTTEEAASKNADT-YFLVVTAPLDGDVAVIGRTYDVQFDYENGVGSSADMFDIDLF-----TSDCGTYVTGLCDQ----CKDSGGSHPIFIPMDTDADFYRIRVARVEDPFLFDCSGVFKVVDE 759
+A++ L G+ +L V +P + V++ RT+TV W G++ SRF IDLY S+ M ED CG WVT+LCPYG GCPD+ GDYD+V+PEP S Y++ V D S GCS FTL A + Y L VT+P DGD A+ G Y V++DYENG+GSS D F IDL+ T DCGTYV LCD+ C DS G + + IP DT A Y +RV D +FDCS F++V++
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWT--GTSDSRFEIDLYY----------CGSFCM-EDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVND 246
BLAST of mRNA_Ecto-sp13_S_contig7043.18102.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 187 bits (474), Expect = 5.560e-55 Identity = 105/242 (43.39%), Postives = 142/242 (58.68%), Query Frame = 1
Query: 64 ASLAVTTPEEDLVVVSGRTFTVRWNQAGSTSSRFAIDLYQYQSPYQLQHTSYSYSMD-EDSCGTWVTSLCPYGERGCPDSTGDYDVVLPEPATDLPDSAYRIGVLGVEDGSFG-CSDKFTLTTEEAASKNADTY--FLVVTAPLDGDVAVIGRTYDVQFDYENGVGSSADMFDIDLFTS----DCGTYVTGLCDQ----CKDSGGSHPIFIPMDTDADFYRIRVARVEDPFLFDCSGVFKVV 753
++L V TP E +VV+ R +TV W GS ++R+ IDLY Y SM ED CG WVT+LCPYGE GCPD+ GDYD+V+PEP + S Y++ V V+D G CSD+F L A D ++ VT+P GD A G Y V+FDY+NG+GSS F IDL+++ DCGT++ LCD+ CKDS G + + IP D +A Y IRV ED ++ CS F+++
Sbjct: 6 SALEVVTPAEGDIVVASRAYTVEWTGTGS-NNRYEIDLY------------YCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEIL 234
BLAST of mRNA_Ecto-sp13_S_contig7043.18102.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 185 bits (469), Expect = 1.910e-54 Identity = 109/251 (43.43%), Postives = 144/251 (57.37%), Query Frame = 1
Query: 49 LHCGH----ASLAVTTPEEDLVVVSGRTFTVRWNQAGSTSSRFAIDLYQYQSPYQLQHTSYSYSMD-EDSCGTWVTSLCPYGERGCPDSTGDYDVVLPEPATDLPDSAYRIGVLGVED-GSFGCSDKFTLTTEEAASKNADTY--FLVVTAPLDGDVAVIGRTYDVQFDYENGVGSSADMFDIDLFTS----DCGTYVTGLCDQ----CKDSGGSHPIFIPMDTDADFYRIRVARVEDPFLFDCSGVFKVV 753
L CG ++L V TP +VVS R +TV W+ GS + RF IDLY Y SM ED CG WVT+LCPYGE GCPD+ GDYD+V+PEP + S Y++ V V+D S CSD+F L A +D ++ VT+P GD A G Y V+FDY+NG+GSS F IDL+ + DCGT++ LCD+ CKDS G + + IP D +A Y IRV ED ++ CS F+++
Sbjct: 10 LACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGS-NKRFEIDLY------------YCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEIL 247
BLAST of mRNA_Ecto-sp13_S_contig7043.18102.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 184 bits (467), Expect = 3.200e-54 Identity = 109/257 (42.41%), Postives = 147/257 (57.20%), Query Frame = 1
Query: 13 LAKSLLLLLTTGLHCGHASLAVTTPEEDLVVVSGRTFTVRWNQAGSTSSRFAIDLYQYQSPYQLQHTSYSYSMDEDSCGTWVTSLCPYGERGCPDSTGDYDVVLPEPATDLPDSAYRIGVLGVEDGS-FGCSDKFTLTTEEAASKNADT-YFLVVTAPLDGDVAVIGRTYDVQFDYENGVGSSADMFDIDLFTS----DCGTYVTGLCDQ----CKDSGGSHPIFIPMDTDADFYRIRVARVEDPFLFDCSGVFKVV 753
+A++ L G+ +L V +P +VV+ +TV W G+TS R+ IDLY S ED CG WVT+LCPYG+ GCPD+ GDYDVV+PEP D S Y++ V D S +GCS FTL A D ++ VT+P DGD A+ G Y V+FDY+NG+GSS + F IDL++S DCGTYVT +CD+ CKDS G + + IP T++ Y IRV ED ++ CS F++V
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWT--GATSGRYDIDLYYCGSVCM-----------EDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPM-DGTSSGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243
BLAST of mRNA_Ecto-sp13_S_contig7043.18102.1 vs. uniprot
Match: A0A6H5KR87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR87_9PHAE) HSP 1 Score: 172 bits (437), Expect = 1.830e-50 Identity = 90/186 (48.39%), Postives = 112/186 (60.22%), Query Frame = 1
Query: 235 EDSCGTWVTSLCPYGERGCPDSTGDYDVVLPEPATDLPDSAYRIGVLGVED-GSFGCSDKFTLTTEEAASKNADT-YFLVVTAPLDGDVAVIGRTYDVQFDYENGVGSSADMFDIDLFT-----SDCGTYVTGLCDQ----CKDSGGSHPIFIPMDTDADFYRIRVARVEDPFLFDCSGVFKVVDE 759
ED CG WVT+LCPYG GCPD+ GDYD+V+PEP D S Y+I V D S GCS FTL A + Y L V +P DGD+A+ G Y V++DY NG+GSS D F IDL+T DCGTYV LCD+ C DS G + + IP DT A Y +RV D +FDCS F++V++
Sbjct: 2 EDDCGDWVTALCPYGADGCPDTQGDYDIVMPEPM-DGTSSGYKIMVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVNSPSDGDIAMAGEVYTVEWDYNNGLGSSKDRFAIDLYTYGTGTGDCGTYVATLCDKPTIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDEIMFDCSEAFEIVND 186 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7043.18102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7043.18102.1 >prot_Ecto-sp13_S_contig7043.18102.1 ID=prot_Ecto-sp13_S_contig7043.18102.1|Name=mRNA_Ecto-sp13_S_contig7043.18102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=253bp MLGLAKSLLLLLTTGLHCGHASLAVTTPEEDLVVVSGRTFTVRWNQAGSTback to top mRNA from alignment at Ecto-sp13_S_contig7043:1367..2128- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7043.18102.1 ID=mRNA_Ecto-sp13_S_contig7043.18102.1|Name=mRNA_Ecto-sp13_S_contig7043.18102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7043:1367..2128- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7043:1367..2128- >mRNA_Ecto-sp13_S_contig7043.18102.1 ID=mRNA_Ecto-sp13_S_contig7043.18102.1|Name=mRNA_Ecto-sp13_S_contig7043.18102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=759bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7043:1367..2128- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |