mRNA_Ecto-sp13_S_contig704.18095.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig704.18095.1
Unique NamemRNA_Ecto-sp13_S_contig704.18095.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig704.18095.1 vs. uniprot
Match: D7G0K3_ECTSI (PIPK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K3_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 1.700e-87
Identity = 138/150 (92.00%), Postives = 142/150 (94.67%), Query Frame = 1
Query:  427 MFTKVDCTEIVHAPVRESAATRNAYHDEGEYQEAGEDTEERGHAPPLLFFEYAAPAFAHLRGVYGMPSSEYRKSFREDSRMIALASNSKSAQSFMFSEDGKYMLKTASESELDSMLRLLPHYAEHVSRRRGSLITRFFGVYRVTNPRTKR 876
            M   VDCTEIVH PVRE+AAT NAY DEGEY+EAGEDT E GHAPPLLFFEYAAPAFAHLRGVYGMPSSEYR+SFREDSRMIALASNSKSAQSFMFSEDGKYMLKTASESELDSMLRLLPHYAEHV+RRRGSLITRFFGVYRVTNPRTKR
Sbjct:    1 MMYSVDCTEIVHPPVRENAATGNAYDDEGEYREAGEDTGE-GHAPPLLFFEYAAPAFAHLRGVYGMPSSEYRRSFREDSRMIALASNSKSAQSFMFSEDGKYMLKTASESELDSMLRLLPHYAEHVARRRGSLITRFFGVYRVTNPRTKR 149          
BLAST of mRNA_Ecto-sp13_S_contig704.18095.1 vs. uniprot
Match: D7G0K4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K4_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 9.090e-60
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 1
Query:  130 GGVGLRRFWRSLWRRACKRELLEGVLKVVVWSFFAERLLQSALVGWGLSGRVGPVEQLGGTLMEANPSDARFAETKAVLKGVRVGRDTLHLNTARASPEMFTK 438
            GG GLRRF RSLW+RA KRELLEGVLKVVVWSFFAERLLQSALVGWGLSGRVGPVEQLGGTLMEANPSDARFAET+AVLKGVRVGRDTLHLNTARASPEMFTK
Sbjct:   11 GGDGLRRFLRSLWKRAVKRELLEGVLKVVVWSFFAERLLQSALVGWGLSGRVGPVEQLGGTLMEANPSDARFAETRAVLKGVRVGRDTLHLNTARASPEMFTK 113          
BLAST of mRNA_Ecto-sp13_S_contig704.18095.1 vs. uniprot
Match: A0A6H5K9A1_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A1_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.200e-43
Identity = 82/85 (96.47%), Postives = 85/85 (100.00%), Query Frame = 1
Query:  622 MPSSEYRKSFREDSRMIALASNSKSAQSFMFSEDGKYMLKTASESELDSMLRLLPHYAEHVSRRRGSLITRFFGVYRVTNPRTKR 876
            MPSSEYR+SF+EDSRMIALASNSKSAQSFMFSEDGKYMLKTASESELDSMLRLLPHYAEHV+RRRGSLITRFFGVYRVTNPRTKR
Sbjct:    1 MPSSEYRRSFQEDSRMIALASNSKSAQSFMFSEDGKYMLKTASESELDSMLRLLPHYAEHVARRRGSLITRFFGVYRVTNPRTKR 85          
BLAST of mRNA_Ecto-sp13_S_contig704.18095.1 vs. uniprot
Match: A0A835Z474_9STRA (PIPK domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z474_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.590e-17
Identity = 51/107 (47.66%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  556 APPLLFFEYAAPAFAHLRGVYGMPSSEYRKSFREDSRMIALASNSKSAQSFMFSEDGKYMLKTASES------ELDSMLRLLPHYAEHVSRRRGSLITRFFGVYRVT 858
            A  ++F EYA P F  LR    +    Y  SF E   +I  A+NSKSAQ F FS DG+YM+KT S++      E+ S + LLPHYAEH+     SL+TRF G+YRVT
Sbjct:   34 AEAVVFEEYAGPVFQRLRDSMRLSQHSYIASFPELGSVIEFAANSKSAQRFFFSSDGRYMMKTMSDTKTMSDTEVASFMALLPHYAEHLRTHSASLLTRFLGLYRVT 140          
BLAST of mRNA_Ecto-sp13_S_contig704.18095.1 vs. uniprot
Match: A0A7S2ECC3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ECC3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.730e-13
Identity = 40/95 (42.11%), Postives = 62/95 (65.26%), Query Frame = 1
Query:  571 FFEYAAPAFAHLRGVYGMPSSEYRKSFREDSRMIALASNSKSAQSFMFSEDGKYMLKTASESELDSMLRLLPHYAEHVSRRRGSLITRFFGVYRV 855
            F +Y+  AFA++R ++G+   E+  S   ++  I   SN+KS Q F +S DGKYM+KT + +E   + R+LPHY  H ++   +LIT+FFG+YRV
Sbjct:  273 FKDYSPQAFAYIRRMFGINEYEFLLSVCGNANFIEFISNAKSGQFFFYSSDGKYMIKTMTNAESKFLRRILPHYFRHCAQYPNTLITKFFGMYRV 367          
BLAST of mRNA_Ecto-sp13_S_contig704.18095.1 vs. uniprot
Match: A0A7S0UHU0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UHU0_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.000e-13
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 1
Query:  571 FFEYAAPAFAHLRGVYGMPSSEYRKSFREDSRMIALASNSKSAQSFMFSEDGKYMLKTASESELDSMLRLLPHYAEHVSRRRGSLITRFFGVYRV 855
            F +YA  AFA+LR ++G+   ++  S   ++  I   SN+KS Q F +S DGKYM+KT + SE   + R+LPHY  H +    +L+T+F G+YRV
Sbjct:  227 FKDYAPVAFAYLRRLFGVNEFDFLLSVCGNANFIEFISNAKSGQFFFYSSDGKYMIKTMTNSESKFLRRILPHYFRHCTENPNTLLTKFLGMYRV 321          
BLAST of mRNA_Ecto-sp13_S_contig704.18095.1 vs. uniprot
Match: B8C473_THAPS (PIPK domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C473_THAPS)

HSP 1 Score: 76.6 bits (187), Expect = 5.440e-13
Identity = 37/95 (38.95%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  571 FFEYAAPAFAHLRGVYGMPSSEYRKSFREDSRMIALASNSKSAQSFMFSEDGKYMLKTASESELDSMLRLLPHYAEHVSRRRGSLITRFFGVYRV 855
            F +Y+  AFA+LR ++G+   E+  S   ++  I   SN+KS Q F +S+DGKYM+KT + +E   + R++PHY  H +    +L+T+F G+YR+
Sbjct:   91 FKDYSPLAFAYLRRMFGVNEYEFLLSVCGNANYIEFQSNAKSGQFFFYSKDGKYMIKTMTNTESKFLRRIMPHYFRHCAMNPNTLVTKFLGMYRL 185          
BLAST of mRNA_Ecto-sp13_S_contig704.18095.1 vs. uniprot
Match: A0A1E7FQZ5_9STRA (SAICAR synthase-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQZ5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.010e-12
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  571 FFEYAAPAFAHLRGVYGMPSSEYRKSFREDSRMIALASNSKSAQSFMFSEDGKYMLKTASESELDSMLRLLPHYAEHVSRRRGSLITRFFGVYRV 855
            F +YA   FA+LR ++G+   ++  S   ++  I   SN+KS Q F +S DGKYM+KT + +E   + R+LPHY  H +    SL+T+F G+YRV
Sbjct:  242 FKDYAPVTFAYLRRMFGVNEFDFLLSVCGNANFIEFISNAKSGQFFFYSSDGKYMIKTMTNTESKFLRRILPHYFRHCTENPNSLVTKFLGMYRV 336          
BLAST of mRNA_Ecto-sp13_S_contig704.18095.1 vs. uniprot
Match: A0A1Z5KDR3_FISSO (1-phosphatidylinositol-4-phosphate 5-kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDR3_FISSO)

HSP 1 Score: 78.6 bits (192), Expect = 1.350e-12
Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:  556 APPLLFFEYAAPAFAHLRGVYGMPSSEYRKSFREDSRMIALASNSKSAQSFMFSEDGKYMLKTASESELDSMLRLLPHYAEHVSRRRGSLITRFFGVYRV 855
            A    F +YA   FA+LR ++G+   ++  S   ++  I   SN+KS Q F +S DGKYM+KT + +E   + R+LP Y +H +    ++ITRFFG+YRV
Sbjct:  300 AHTFKFKDYAPVVFAYLRRMFGVNEFDFLLSVCGNANFIEFISNAKSGQFFFYSSDGKYMIKTMTNAESKFLRRILPDYLKHCAENPNTMITRFFGMYRV 399          
BLAST of mRNA_Ecto-sp13_S_contig704.18095.1 vs. uniprot
Match: B7GAW8_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAW8_PHATC)

HSP 1 Score: 78.2 bits (191), Expect = 1.910e-12
Identity = 44/114 (38.60%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  514 EYQEAGEDTEERGHAPPLLFFEYAAPAFAHLRGVYGMPSSEYRKSFREDSRMIALASNSKSAQSFMFSEDGKYMLKTASESELDSMLRLLPHYAEHVSRRRGSLITRFFGVYRV 855
            E++  G  T     A    F +Y+   FA+LR +YG+   ++  S   ++  I   SN+KS Q F +S DGKYM+KT + +E   + R+LP Y  H      +LITRFFG+YRV
Sbjct:  436 EFRPKGGATPPHRLAHTFKFKDYSPIVFAYLRRMYGVNEFDFLLSVCGNANFIEFISNAKSGQFFFYSSDGKYMIKTMTNAESKFLRRILPSYFRHCCENPNTLITRFFGMYRV 549          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig704.18095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0K3_ECTSI1.700e-8792.00PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G0K4_ECTSI9.090e-6095.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9A1_9PHAE1.200e-4396.47PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835Z474_9STRA1.590e-1747.66PIPK domain-containing protein n=2 Tax=Tribonema m... [more]
A0A7S2ECC3_9STRA1.730e-1342.11Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S0UHU0_9STRA4.000e-1342.11Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
B8C473_THAPS5.440e-1338.95PIPK domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1E7FQZ5_9STRA1.010e-1241.05SAICAR synthase-like protein n=1 Tax=Fragilariopsi... [more]
A0A1Z5KDR3_FISSO1.350e-1240.001-phosphatidylinositol-4-phosphate 5-kinase n=2 Ta... [more]
B7GAW8_PHATC1.910e-1238.60Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig704contigEcto-sp13_S_contig704:15382..22043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score270.0
Seed ortholog evalue1.3e-69
Seed eggNOG ortholog2880.D7G0K3
Model size876
KEGG rclassRC00002,RC00078
KEGG koko:K00889
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
Ec32 ortholog descriptionPhosphatidylinositol-4-phosphate 5-kinase, core
Ec32 orthologEc-13_001240.1
EC2.7.1.68
Cds size876
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig704.18095.1prot_Ecto-sp13_S_contig704.18095.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig704 15382..22043 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463965.7790167-CDS-Ecto-sp13_S_contig704:15381..155111681463965.7790167-CDS-Ecto-sp13_S_contig704:15381..15511Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig704 15382..15511 +
1681463965.8008296-CDS-Ecto-sp13_S_contig704:17286..174561681463965.8008296-CDS-Ecto-sp13_S_contig704:17286..17456Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig704 17287..17456 +
1681463965.8119156-CDS-Ecto-sp13_S_contig704:17818..179561681463965.8119156-CDS-Ecto-sp13_S_contig704:17818..17956Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig704 17819..17956 +
1681463965.8229344-CDS-Ecto-sp13_S_contig704:19575..197351681463965.8229344-CDS-Ecto-sp13_S_contig704:19575..19735Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig704 19576..19735 +
1681463965.8346224-CDS-Ecto-sp13_S_contig704:21266..214151681463965.8346224-CDS-Ecto-sp13_S_contig704:21266..21415Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig704 21267..21415 +
1681463965.8450227-CDS-Ecto-sp13_S_contig704:21914..220431681463965.8450227-CDS-Ecto-sp13_S_contig704:21914..22043Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig704 21915..22043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig704.18095.1

>prot_Ecto-sp13_S_contig704.18095.1 ID=prot_Ecto-sp13_S_contig704.18095.1|Name=mRNA_Ecto-sp13_S_contig704.18095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=292bp
APRATAAAAAAATAAEPVPFWLRSSGAGPTGAMANTSSPLEAAGGVGLRR
FWRSLWRRACKRELLEGVLKVVVWSFFAERLLQSALVGWGLSGRVGPVEQ
LGGTLMEANPSDARFAETKAVLKGVRVGRDTLHLNTARASPEMFTKVDCT
EIVHAPVRESAATRNAYHDEGEYQEAGEDTEERGHAPPLLFFEYAAPAFA
HLRGVYGMPSSEYRKSFREDSRMIALASNSKSAQSFMFSEDGKYMLKTAS
ESELDSMLRLLPHYAEHVSRRRGSLITRFFGVYRVTNPRTKR
back to top

mRNA from alignment at Ecto-sp13_S_contig704:15382..22043+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig704.18095.1 ID=mRNA_Ecto-sp13_S_contig704.18095.1|Name=mRNA_Ecto-sp13_S_contig704.18095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6662bp|location=Sequence derived from alignment at Ecto-sp13_S_contig704:15382..22043+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCCTAGAGCGACCGCTGCTGCGGCTGCTGCTGCGACTGCTGCTGAACC GGTCCCGTTTTGGCTGCGCTCGTCTGGAGCGGGTCCTACTGGCGCCATGG CGAACACCTCCTCTCCTCTTGAGGCCGCAGGTGCGATTACTTCAGCAAAT GTACACAGCATTGCCTGTTTTTTGTGCACTTGATTGACTCTTGATGTTTT TTTTTTGGGCACTTTGTTTTGGTAGTTTCATCGCTCTAAATCAGCGATCA CCCCCGCAGCATTTTATGTCGTACTGGAGCGCTCTAACATGGGAGATTGT TTCGTTGTGTTTTTGGTTGAAAAATTGTTTTTCTTTTCTTGTTTTGGTAG CAAACCGCGTCTTCGGGGGCCTCTCTGGGATCCAAATTTATTTCTAGTTC TTTTCAGAATGGTGTACCCCCTTCACGGGGTAGTTGGGTTGTGACCATGG AAGGCGTCCGCGTCAGTTGGACCAGTGCGGACATGACAAGGTACTAAGCG GAGACCGGAACCGTTTCTATGTGCAGACAACAACAACAACAACAACAACA ACAACAACAACACCCAAATTAATGTACGAAGGACGAAGGGCAGTAGTGCA ACTACCCTCAGGTAACGCATTAACCGTTACCGTGTAGCTTTAATATCATT TCGTAGCATTTTCGCGCTGTTTCGTCGGGACGCGTGTGGTACCAAGGGTG ACACAAGTAATGACACGCCCCGTGGACCGATTTTTTACAACTCGATTACT CCGCACAACAGAGAATGTCTTACTCAAACGACACGGTTTGGGAAAGCTGA GACGGTTGCGGTGCCGCCTTTCCTGCGCCGTCGCCACTCGCATATGCGGT GGAGCAATAGAGCTTTGAAACTTGGTCCTGGAGGAGTGACATATTGCGTC ATGCAAATGATGTTCTTGTTGGAGTTCCACGAAGTGATTGTATTTACAGC GATAGTGACGCATGGCAAAGTGTGGGCGAGCACACATCGTAGGGTCGATT TTTTCCAAGGCGCGATTTGCTCCAGAACACCTCGCATCCACAACCAAGCT GCCAATCAATGCCACACCACAGGATGTGGCGTCGATTTTTTCGAAGCGCG GTTCGCTCCACGACACTCCGCGTCCACAAGCAAGTTGCCAATCACTGCCA CACCATAGGGTGTGGCATCGATTTTTGCGAAACGCTCCACAGTACTCCGC GTCCACAACCCGGCTGCCAATCAATGCCACACCATAGGGTGTGGGATCGA TTGTTTCGAAGCGCTCCAGAACACTTCCCACCCATACCCAAGAAAGAGAG AGAGACTGCCGGGGGTGCGATTTCCGATTGCCCCGCATCAAAATCCGTGC TTTGTCTTATTTCGGCTACGACTTCTACCGTGCGTAGCCGCCCTTGCAGC TGGAACCGGAACTCATGGTTTGCCTCGCGTCTTTTGGACCGGGTGTTTTA CTCAACTCGCTCTCTTCTGCAACACGGCGGTGATGATCTGCGACGGTCCT TGCAATCGTCGTGGAAGGGGGTGTCGAAGCGAGCGAACAAGATTTGACTC CTTTCCGTCCGCACTTTCCCATCCGTCGATTTTCGTACCATGGTTTACCG TAGCCGCCACTACCGCTGCAAACAAGTGGACACCTTACATCGTAGCCGCC GCTGTCGTAACAGAAAACTCCCCCCCCCCCCCCCCCCCCCAAAAACCCAA CCCCCGCGGACCCCCCCCCCCCCCCCCCCGGCCTCTAGGGGGTGCCGGGC AAAGAGCAAAAGCACCCCNNNNNNNNNNCCCGGCTTTGTAGGGATGCGAG GTCAATGGTCAAACGACTACGGCATGCACGACTATGATTAATCCCCCCCC TGCCCGCGCGCGTCTGTGTCTCCGTATGCACCCTTACCCCTTCTTCTGCA ACAAGGCGGCGTTGGCTTGCGACGGTTCTGGCGGTCGTTGTGGAGGAGGG CGTGCAAGCGAGAGCTGCTGGAGGGCGTGCTCAAGGTCGTCGTATGGTCG TTCTTCGCCGAGAGGCTGCTGCAGTCGGCGCTAGTAGGGTGGGGACTGTC CGGCCGCGTGGGTCCGGTGGAGCAGGTTCGTGGCGGCTGTTCGTTTTTGT TTGTTTCGTTGTTGTTGCTGCTGCTGCTGTGTTACCTTGTGGGGGCTGTC ACGCCGCGGGGGTCCGGTAGTCGTCTGAAAACTAAGCCATGCAAAACACG AGTACGTCCCTACTCCTTGCCGCTGAACTCGCGACCCCATTGTCACGTAA CCCCCTCAACCCCCCCCCTCCCCCCCCTAACTTCGTGGCATCCTCATGGA AATCAACCCATCCAATGCGCATTTCTCTCCTCCCGGCTGATATCGGTTCC CCCCCCTCCCGCCCCCGTCGCTGAACTCCCGACCCCCCTTTTATTGAACC TTCACATGGAATTCCCTGATGCCCCCCCCCTCCCCAGCTTGGCGGCACCC TCATGGAAGCGAACCCGTCCGACGCACGTTTCGCCGAGACTAAGGCGGTG CTGAAAGGGGTCAGGGTGGGGAGGGACACGCTACACCTCAACACCGCACG AGCATCACCGGAAATGTTCACAAAGGTGCGGGATTTTTAACCTGTCTCAC AAAAACCCGAACACGTACTGTTGTCTTTTTTTTCTGAATATGGCACAATG AATCCATCTCCATCCATAGAGAAGAGTGCAGGATAGATTGGCAATGAATT GATAGCGTTAGTGGAAGCTACCTTTTCTCGAGGCCACCAACCCGAGCGGT AAGTGGGGAGGGAACACCCTGCACCTCAACACCGTACGAGCATCACCGGG GAAGTTCATTAAAGGTGCGGGATTTTTTTTGTGATTGTTTTGGTTGTATC TTATATGTGGTGACATTGATTATTTTGAGTTTTTTTGTCTGCGTAGTAAA CGCGGGCACAATCTATTGGGCCAGACAGGCGGGTTATTTTCTTTTTATCT GTCTACAAAGAGATGCGAGCACTCTTCTATTTTTTGAAGGCCACGAACGC GAGCGGTAAGCACCTACAGAACGGGCGCGGAGATAAAAAACCGGCAAGAT CGAGTCGAGGCTCAGTTTTTTCGTGTTTTTTTGTTTCGAGCACGGATGTT CTAGTGATTATTGTGCAGGATCCACCCGTGAGCTGTTTATTCTTAGCCCT GCTTCCTTGTGTTCGTGAAAAATCAAGCCTCTGTTTCTTAACGACATGTT CATTAACTGCGGGCCATTTCTGTACAACAGTAGCTTTCGCAACACCCCCC GCCTGAGCTGGTTTTCAAACTCGATTTCTTCTCCGCAACACGATGAGTGG CAACGCCAAGCACGTCGGCGTTGAAGCTGTCTCGTCGAGAGTTTTCCGAA AACGTGTTGTCGTGGCCTAATCGAGGTTCGAGGGGGGGTGTACGTATAGT CGTGCATGCCGTAGTCGTAAGACCATTGACCTCGCATCCCTACAAAGCCG GGACGGAGAACGCCGGGTTCTCAACGGACCAGGCTCTCACATGACCAAGC GCGAAGCGCCGTGCGGTTTTCGGCGAGTCGCGTGAAGGGTACGCTGCATC CTACGAAGGGTGTTCGGCATCTTGTGCTTACTTCCTTGCGTATGGATGAC AGCTGCGTATGGATGACAGCTGCGTATGGATGACAGCTGCGTATGACTTA ATTTATTTTCTGGTACTTTCACTTCCAGAGACAGTTATAAGCACTGTGTA ACTGCCTCGAGGATGCTTGACCGATTTTAACACAACGTGGTGCGATCATC CCCCTTGCGCGGCTATTACACCACTAAGCGCGAAGCGCCGTGATGAATTC GGCGGTTCTGTCGATCGGTGTGATATGTAGGCGTGATATTCATCCGCAGT AGTGAGAGGGCTCCGATATGGCCGGACGAAGATTTTGAGCGAAATGTCGG TGGCTGAGCTTTCATGAGGTTGGGTTTGTTGAAGAGGTGCTTCGGTGTAG TCAGAGATGAGTGCGGTTCCCCAGTTTTCGATGTTGTGAGTTTCAAAAAG CAACAACAGTGACATCAACGACCCAACAACAGAACCACAGCAACAACAAC AACGACAACAACAGTTCCACCACAACAACAAAAAACATCAACATCGACAA CAACAACAACAACATTAACAACAACAACAACAACACTACCACCACAACAA ATCAACATCGACAACGACCACGACAACAACAACAACAACAACAGGTCGAC TGCACAGAGATTGTGCACGCTCCCGTACGAGAAAGCGCAGCCACGCGTAA CGCGTACCACGACGAAGGCGAATATCAGGAGGCCGGAGAGGACACGGAGG AGCGGGGACACGCCCCTCCGCTGCTTTTTTTCGAGTACGCCGCCCCGGCC TTCGGTGAGTCTTGTTTTTTTGTTTCTTACACGGATCCATCTCTTACGGC GCCGCCTCCCTCTGAAAATATATATCAGGTATATTTTTTTTCAGACGAAC TCATCTATCCGTAGATAAGGGGTCCAGGAGAAAAGTAGTGAACCTGAGCG ATTAATGTGTCGAGCACGCCGCACCGCCTTCGGTTAGTCTTTTTTTTTTT CTTGAACGACTCCATCTCTATCCGTAGATGAGGGTGTAAGATATGTTTCG AGTACGCCGCGTCCGCCTTCGGGACTTTTTCATTTTTTTCTTGGACGAAT CCATTTCTATCCTGTACAGAAAATACGATCGAGGTTAAGTTTGGCTAAGT CTTACGGCTTGATTTTTTCCGAATTGGATTTAGGGGGGGTCCTTTTCGAA GCCGTTTTGGTGCCGTGAATGTGTGATCAGTTGACAACGCACGCCAGAAA GAGGCCCTTGGCCGACGACATCCACAAAGTACAGCCCATGGCGTGTGATC ATATACATATGCTCTGCTTGCCTCCCAGAAACAGAGGGAACTTTCCAGGT TTGATTGCACACGGCCTGTACACGTGAACGGAGTGTGTTGCGGTGTTGAC TTTTTTTGGATGTTGCTTTTTTTTTTCTGGTTTTTCCGAGCGTGATCAGT ACACAACCCATGCCAGAGAGAGGCCTACGGCCGACGATATCCACAAACTG CAGCCACGGCGTGCGATGATACACATGCCCTCAGCAGGCGACCCAATAAC AGGGCGGTCGGAGTATTGTTGGTCGCACACGAGCGAAAACCGTGAACTGC ATGACGCATGTTGTGACCCAAAAGAGTCTTGAATCGGCCATCAAAAGAAC CTGCCTAGAGGAACCGTGAGAAGGTCGTTTGGATCCAGATATGTTTTCCT TCGCAGACCACCCCCCCTCGACCGAGGGAAAATGTTTTTTTTCGAAGTAG TCGAGCCATAAGACTCGGCCCTATCAATGAACTGTTTGCGTTAGCGGGGC ACACCTGTGTTTTCTCCGTTTCACCGAGCAGCATGCGCGTAGGTTGCACA AGATATGACACCCCTGGACCAAATTTCGAAGCTTGATCGCTCGGCAGGGC AAGCAGTGCCAGTGCCGAAAATCGCAGAGTTGGAACCGTCCTGTCGAGAG TCTTTCGGACACGTATCGTTTGCCTCGACCATCCTCTTGGTCGTGGAGTA ATCGAGCTTTGAAAATAGGTCGAGGGGTGTGGTATCTGATGCAACCTACA GTTAAGCGATATTTCCCCTGTGGTTAACAAGAACCGTTTTTTTTTTTCTT GTAGGGCACCTTCGTGGAGTGTACGGAATGCCGTCGTCGGAGTACCGGAG ATCATTCGTAGAATATTCCAAGATGATCGCCCTTGCAACAATAGCCAGCC GTTCGTTTTTTATTTTCTGTAGCGCATGTGCGTGCACGGAATGCCGTCTT CGGAGTACCAGAGATCATCCCGAGAAGATTCCAGGATAGTCACCCTTGCA ACAATAGCCGTTCGTTCTTTCGTTTTTTTTTGTAGCGCACCTGCGTGGAG TGTACGGTATGCCGTCATCGGAGTACCGGAAATCATTCCGAGAAGATTCC AGGATGATTGCCCTTGCTTCCAACTCCAAAAGCGCGCAGAGCTTCATGTT CAGCGAGGACGGCAAGTACATGCTCAAGACCGCGGTGAGTAAGCTTTTTT TCCCCCTCTTGCTGTCGGGCCCTTTCGTCTTGATGTCGGGTCCTTTAGTC TTGCTGCCGGGCCCTTTCGCCTTGCTGTCGGGCCCCTTCGTCTTGCTGTT GGACCCTTTCGTCTTGCTGTCAGGTCAATTCATCCTGCCGTCGGGCCCTT TCTTCTCACCGGTGTCGGACCCTTTCGTCATGCTGTCGGACCCTTTCGTC TTGCTGTCGGGTCCTTTCGCCTTGCTGTCGGGTCCCCTCGTCTTGCTGTC GGGTCCTTTCGCCTTGCTTTCGGACCCTCTCATTTTACTGTTGGACCCTT TCTCGGATTACTACTGTCGGGGCGCTTTCCCCTTGTAAAAAGCCGGACTC GTTGCTGGGCTCGGACCCTTTCTTCTTTGCTGTCGGACCCTTTCACCTCA CTGTGCGGACCCTTTCTTTCCGCTGTGCGGACCCTATCCTCTCACCGCTG TCGGGCGCTTCCTTCCCCAAAAAAAATGAACAGTCGGAGTCGGAGCTGGA CTCGATGTTGCGGCTGCTGCCGCACTACGCCGAGCACGTGTCGAGGCGGC GGGGTTCTCTCATCACCCGCTTCTTCGGCGTTTACCGCGTCACGAACCCC AGGACGAAACGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig704:15382..22043+

>mRNA_Ecto-sp13_S_contig704.18095.1 ID=mRNA_Ecto-sp13_S_contig704.18095.1|Name=mRNA_Ecto-sp13_S_contig704.18095.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=876bp|location=Sequence derived from alignment at Ecto-sp13_S_contig704:15382..22043+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCCTAGAGCGACCGCTGCTGCGGCTGCTGCTGCGACTGCTGCTGAACC
GGTCCCGTTTTGGCTGCGCTCGTCTGGAGCGGGTCCTACTGGCGCCATGG
CGAACACCTCCTCTCCTCTTGAGGCCGCAGGCGGCGTTGGCTTGCGACGG
TTCTGGCGGTCGTTGTGGAGGAGGGCGTGCAAGCGAGAGCTGCTGGAGGG
CGTGCTCAAGGTCGTCGTATGGTCGTTCTTCGCCGAGAGGCTGCTGCAGT
CGGCGCTAGTAGGGTGGGGACTGTCCGGCCGCGTGGGTCCGGTGGAGCAG
CTTGGCGGCACCCTCATGGAAGCGAACCCGTCCGACGCACGTTTCGCCGA
GACTAAGGCGGTGCTGAAAGGGGTCAGGGTGGGGAGGGACACGCTACACC
TCAACACCGCACGAGCATCACCGGAAATGTTCACAAAGGTCGACTGCACA
GAGATTGTGCACGCTCCCGTACGAGAAAGCGCAGCCACGCGTAACGCGTA
CCACGACGAAGGCGAATATCAGGAGGCCGGAGAGGACACGGAGGAGCGGG
GACACGCCCCTCCGCTGCTTTTTTTCGAGTACGCCGCCCCGGCCTTCGCG
CACCTGCGTGGAGTGTACGGTATGCCGTCATCGGAGTACCGGAAATCATT
CCGAGAAGATTCCAGGATGATTGCCCTTGCTTCCAACTCCAAAAGCGCGC
AGAGCTTCATGTTCAGCGAGGACGGCAAGTACATGCTCAAGACCGCGTCG
GAGTCGGAGCTGGACTCGATGTTGCGGCTGCTGCCGCACTACGCCGAGCA
CGTGTCGAGGCGGCGGGGTTCTCTCATCACCCGCTTCTTCGGCGTTTACC
GCGTCACGAACCCCAGGACGAAACGG
back to top