mRNA_Ecto-sp13_S_contig704.18092.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig704.18092.1
Unique NamemRNA_Ecto-sp13_S_contig704.18092.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig704.18092.1 vs. uniprot
Match: A0A6H5KCB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCB4_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 3.160e-24
Identity = 173/234 (73.93%), Postives = 174/234 (74.36%), Query Frame = 1 
Query:  130 APVAPGQYNPATGQYAGYGTTTPAAPAPAXXXXXXXXXXXXXTPAAVAGSTAPTAASXXXXXXXXXXXXXXXXPGVYGAQPAYAGQQQQQQP--YGGPTSSQQTGAAPGTAVATPGAAAPSPYTGYGATAAAPVXXXXXXXXXXXXXAVXXXXXXXXXXTGYGTSQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGXXXXXXXXXXXSAATSRVGQQPATTTPASGR 825
            AP+APGQYNPATGQYAGYGTTT       XXXXXXXXXXXXX               XXXXXXXXXXXXXXX PGVYGAQPAYAGQ        YG P SSQQT AAPGTAVATPGA APSPYTGYG TA APV             AVXXXXXXX   TGYGTSQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXSAATSRVGQQPATTT ASGR
Sbjct:  463 APIAPGQYNPATGQYAGYGTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXTPGVYGAQPAYAGQXXXXXXXXYGDPASSQQTTAAPGTAVATPGATAPSPYTGYGVTAPAPVGAPAAATPTGYGAAVXXXXXXXDPATGYGTSQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXXSAATSRVGQQPATTTDASGR 690
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig704.18092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCB4_9PHAE3.160e-2473.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig704contigEcto-sp13_S_contig704:5817..7682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1271
Hectar predicted targeting categoryother localisation
Exons2
Cds size1269
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463965.5543044-CDS-Ecto-sp13_S_contig704:5818..62921681463965.5543044-CDS-Ecto-sp13_S_contig704:5818..6292Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig704 5819..6292 -
1681463965.5651977-CDS-Ecto-sp13_S_contig704:6887..76821681463965.5651977-CDS-Ecto-sp13_S_contig704:6887..7682Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig704 6888..7682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig704.18092.1prot_Ecto-sp13_S_contig704.18092.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig704 5819..7682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig704.18092.1

>prot_Ecto-sp13_S_contig704.18092.1 ID=prot_Ecto-sp13_S_contig704.18092.1|Name=mRNA_Ecto-sp13_S_contig704.18092.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=423bp
APAASASQPATAPAPSSNAAAAAAPGGYYGQQYAQQQQPGAAAAPVAPGQ
YNPATGQYAGYGTTTPAAPAPASTTAASQQQQQQQTPAAVAGSTAPTAAS
TPTAAGAATTPSAAAAPGVYGAQPAYAGQQQQQQPYGGPTSSQQTGAAPG
TAVATPGAAAPSPYTGYGATAAAPVGAPAAATPTGYGAAVTAGATATNPA
TGYGTSQQQQQQQYPGYGGYGGAAPTAAAAGSAAPAASSATGYGAATSSY
GSYASSAATSRVGQQPATTTPASGRGGTSNNPAASSSSSATGSANGPGSS
GAAASGGRSSRFSSSSSTPSSSSSATQAKSTPAGGASGYKPGASSSSSSS
NSRGAGGASGYKPSSAGSTPGSSAGGATKAGSSARGGSGGTATTSTGAAA
GTAAAAVAAAAPASSSGNASGGS
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mRNA from alignment at Ecto-sp13_S_contig704:5817..7682-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig704.18092.1 ID=mRNA_Ecto-sp13_S_contig704.18092.1|Name=mRNA_Ecto-sp13_S_contig704.18092.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1866bp|location=Sequence derived from alignment at Ecto-sp13_S_contig704:5817..7682- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCCCGCTGCGTCCGCTTCCCAGCCGGCGACGGCGCCTGCGCCTTCTTC
GAACGCCGCGGCTGCCGCTGCCCCCGGCGGATACTACGGGCAGCAATACG
CGCAGCAGCAGCAGCCAGGAGCGGCAGCGGCGCCTGTTGCCCCAGGGCAG
TACAACCCTGCCACGGGCCAGTACGCCGGGTACGGCACGACCACCCCTGC
CGCCCCCGCTCCCGCTAGCACCACAGCCGCCAGCCAGCAGCAGCAGCAGC
AGCAGACCCCCGCAGCCGTGGCCGGAAGCACCGCGCCAACCGCCGCCTCT
ACCCCTACTGCCGCGGGAGCTGCCACCACACCGTCCGCGGCTGCCGCCCC
CGGCGTTTATGGCGCGCAGCCGGCGTATGCGGGGCAGCAGCAGCAGCAGC
AGCCCTACGGAGGTCCGACCTCCTCTCAGCAAACGGGGGCGGCCCCGGGC
ACAGCAGTGGCGACCCCCGGTGCCGCTGCGCCATCGCCGTACACCGGGTA
CGGTGCAACGGCGGCGGCGCCTGTAGGGGCCCCGGCTGCTGCCACGCCGA
CTGGTTACGGAGCAGCGGTGACGGCTGGTGCTACCGCTACCAACCCTGCT
ACGGGATACGGCACCTCGCAGCAGCAGCAGCAGCAGCAATACCCGGGTTA
CGGTGGCTACGGCGGTGCTGCCCCCACGGCCGCTGCTGCTGGCTCCGCCG
CTCCTGCCGCTTCGTCGGCAACCGGCTACGGCGCGGCGACGTCATCATAC
GGGAGCTACGCAAGCTCGGCGGCTACGTCTCGAGTTGGGCAGCAGGTGAG
CATTTTATCTGACGCGCGAGCTGGAGTTTTAGCACCGGACTTGTATGTAT
GTATCTTTCTGGAGAGAAGAGCCGCCAGCGCCAGCGCCCTGTTTTTTCTT
GGTTCTCCCATGTGGATCGTAGCCTGGGCCGGCGAGAACCCGATACATAC
CGCTAAGTCCCGGCATTGTGTTGATACAAGGTCAATGGTCGAAGGCATGC
ATTTTTATGAGTACCCCTCCCCCCCCCCCTCCCACCGCTGTCATCTGTGT
GTTTTGTTTTTCTTGGTTACTGACATCGACCGTGCTGACCGCCCGATCAA
AGTATGTGCGTGTTGTTCTATCTTGTACGTCGACCGCACTCACCGGCATG
CGTGTGGCTTGGGTGTCGTCATTTTTGACGTCGACAGCGCTTACCGGCTG
ACCAATTGTGTGTGTTGTTTATGTTTGTGTGTGTTTGTTAATTATTTGCA
GCGACCCCGCTTGCCGTCATTCGTATGCGTATGCGTGTCCTATGTCATTA
TTCACATCGACGGCGCTAACTTCTGAACGATGTGCGTGTGTTTTATTTTC
ATCGCGGACGTGCTGTGCTGCCGCGAATAAAACACAACAGCCCGCGACGA
CGACGCCCGCCTCTGGACGCGGCGGAACCAGCAACAACCCGGCCGCTTCC
TCCTCCTCCTCAGCCACCGGTAGCGCAAACGGCCCCGGGTCCTCCGGAGC
GGCGGCCAGCGGCGGCCGGTCCAGCCGCTTCTCGTCCTCGTCGTCGACTC
CCTCCTCGTCCTCCTCCGCCACCCAGGCCAAGTCTACCCCTGCCGGTGGA
GCATCGGGCTACAAGCCTGGTGCCAGCAGTAGCAGCAGCAGTAGCAACAG
CAGGGGAGCCGGTGGCGCATCGGGATACAAGCCTAGCTCCGCCGGGAGCA
CCCCCGGCAGCAGCGCCGGCGGTGCGACGAAGGCCGGCTCTTCTGCTCGC
GGGGGCAGCGGCGGTACGGCAACAACCTCTACCGGTGCGGCGGCGGGTAC
GGCGGCGGCGGCGGTGGCGGCGGCGGCCCCCGCGTCCTCCTCGGGCAACG
CCAGCGGTGGGAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig704:5817..7682-

>mRNA_Ecto-sp13_S_contig704.18092.1 ID=mRNA_Ecto-sp13_S_contig704.18092.1|Name=mRNA_Ecto-sp13_S_contig704.18092.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1269bp|location=Sequence derived from alignment at Ecto-sp13_S_contig704:5817..7682- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCCCGCTGCGTCCGCTTCCCAGCCGGCGACGGCGCCTGCGCCTTCTTC
GAACGCCGCGGCTGCCGCTGCCCCCGGCGGATACTACGGGCAGCAATACG
CGCAGCAGCAGCAGCCAGGAGCGGCAGCGGCGCCTGTTGCCCCAGGGCAG
TACAACCCTGCCACGGGCCAGTACGCCGGGTACGGCACGACCACCCCTGC
CGCCCCCGCTCCCGCTAGCACCACAGCCGCCAGCCAGCAGCAGCAGCAGC
AGCAGACCCCCGCAGCCGTGGCCGGAAGCACCGCGCCAACCGCCGCCTCT
ACCCCTACTGCCGCGGGAGCTGCCACCACACCGTCCGCGGCTGCCGCCCC
CGGCGTTTATGGCGCGCAGCCGGCGTATGCGGGGCAGCAGCAGCAGCAGC
AGCCCTACGGAGGTCCGACCTCCTCTCAGCAAACGGGGGCGGCCCCGGGC
ACAGCAGTGGCGACCCCCGGTGCCGCTGCGCCATCGCCGTACACCGGGTA
CGGTGCAACGGCGGCGGCGCCTGTAGGGGCCCCGGCTGCTGCCACGCCGA
CTGGTTACGGAGCAGCGGTGACGGCTGGTGCTACCGCTACCAACCCTGCT
ACGGGATACGGCACCTCGCAGCAGCAGCAGCAGCAGCAATACCCGGGTTA
CGGTGGCTACGGCGGTGCTGCCCCCACGGCCGCTGCTGCTGGCTCCGCCG
CTCCTGCCGCTTCGTCGGCAACCGGCTACGGCGCGGCGACGTCATCATAC
GGGAGCTACGCAAGCTCGGCGGCTACGTCTCGAGTTGGGCAGCAGCCCGC
GACGACGACGCCCGCCTCTGGACGCGGCGGAACCAGCAACAACCCGGCCG
CTTCCTCCTCCTCCTCAGCCACCGGTAGCGCAAACGGCCCCGGGTCCTCC
GGAGCGGCGGCCAGCGGCGGCCGGTCCAGCCGCTTCTCGTCCTCGTCGTC
GACTCCCTCCTCGTCCTCCTCCGCCACCCAGGCCAAGTCTACCCCTGCCG
GTGGAGCATCGGGCTACAAGCCTGGTGCCAGCAGTAGCAGCAGCAGTAGC
AACAGCAGGGGAGCCGGTGGCGCATCGGGATACAAGCCTAGCTCCGCCGG
GAGCACCCCCGGCAGCAGCGCCGGCGGTGCGACGAAGGCCGGCTCTTCTG
CTCGCGGGGGCAGCGGCGGTACGGCAACAACCTCTACCGGTGCGGCGGCG
GGTACGGCGGCGGCGGCGGTGGCGGCGGCGGCCCCCGCGTCCTCCTCGGG
CAACGCCAGCGGTGGGAGC
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