mRNA_Ecto-sp13_S_contig7038.18089.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7038.18089.1
Unique NamemRNA_Ecto-sp13_S_contig7038.18089.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A6H5KZD5_9PHAE (RF_PROK_I domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZD5_9PHAE)

HSP 1 Score: 611 bits (1576), Expect = 1.810e-218
Identity = 321/326 (98.47%), Postives = 323/326 (99.08%), Query Frame = 1
Query:    1 MVSTRRSARLLCLSCALVEASGFVYSLPKVHQLRRQQQRSQQQHQHQLGAMGSQRRPAATSSRGSRALGMALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
            M STRRSARLLCLSCAL EA GF+YSLPKVHQLRRQQQRSQQQHQHQLGAMGSQRRPAATSSRGSRALGMALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEV+GDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK
Sbjct:    1 MSSTRRSARLLCLSCALAEALGFIYSLPKVHQLRRQQQRSQQQHQHQLGAMGSQRRPAATSSRGSRALGMALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVSGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 326          
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A836CKN4_9STRA (Peptide chain release factor 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKN4_9STRA)

HSP 1 Score: 360 bits (923), Expect = 1.930e-120
Identity = 179/257 (69.65%), Postives = 216/257 (84.05%), Query Frame = 1
Query:  208 MALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
            MALDDFV+ QL GI+R++NE+TERLGDPDVLA+ K +ME+S++RA +E +V  + EY  A   L GA EMF ES+G   DAE++EMAREE+RDLE  ME +E  +KL+LLPTDPND RNVMLEIRAGTGGDEAA+WA +LL VY+KYA E GW+L+V+E A  + GGF++++AEV GD VYSKLKYEAGVHRVQRVPATE+QGRVHTSTATVA+MPEVDEV V I P DI++ TAR+GGSGGQNVNKVE+AVDLFHK
Sbjct:    1 MALDDFVVRQLGGIERSYNEMTERLGDPDVLADSKKLMEISKDRAKMEGVVTMFGEYKDALAQLGGATEMFQESAG---DAELREMAREEMRDLEARMERMEVDLKLMLLPTDPNDERNVMLEIRAGTGGDEAAIWAGDLLNVYRKYATEMGWTLRVVEEAAADMGGFKSIVAEVRGDAVYSKLKYEAGVHRVQRVPATESQGRVHTSTATVAVMPEVDEVTVRIDPGDIDMHTARAGGSGGQNVNKVETAVDLFHK 254          
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A6S9M8F3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9M8F3_HETAK)

HSP 1 Score: 328 bits (842), Expect = 1.670e-107
Identity = 167/270 (61.85%), Postives = 209/270 (77.41%), Query Frame = 1
Query:  169 PAATSSRGSRALGMALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
            P   + + S  L MA+  ++ ++L GI++TFN+LT  L DPDVL + K +M++S+ER+ +EEIV  + EY     DL GAKE+F+ES+G   D EM+EMAR+EI + E VM+ L+ K+K+LLLPTDPND RN MLEIRAGTGGDEA +WA +L+ VYKKYA  QGW+  +IE +  + GG ++   EV G+ VYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEV V I P+DIE+ TARSGG+GGQNVNKVE+A DLFHK
Sbjct:   36 PHPVARKTSGGLKMAIPSYMQDKLKGIEQTFNQLTNSLADPDVLNDSKQLMKISKERSKLEEIVEAFQEYKSREADLTGAKELFSESAG---DPEMREMARDEIDECETVMDELQEKLKILLLPTDPNDERNCMLEIRAGTGGDEAGIWAGDLVEVYKKYAQTQGWACTLIEESAADMGGVKSCTLEVRGEAVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVTVKIDPKDIELTTARSGGAGGQNVNKVETAADLFHK 302          
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A140ECK3_9STRA (Plastid peptide chain release factor 1 n=1 Tax=Monodopsis sp. MarTras21 TaxID=1745953 RepID=A0A140ECK3_9STRA)

HSP 1 Score: 324 bits (830), Expect = 9.580e-106
Identity = 165/261 (63.22%), Postives = 204/261 (78.16%), Query Frame = 1
Query:  196 RALGMALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
            R+L MALD FV  +L  I RT++ELTERLGDPDV+ANP  +M+V+QER  +EE+V  Y ++ K  ED+ GAK++F E   AG D E+KEMAR EI+DLE     +E ++ +L+LP DP D+RNVMLEIRAGTGG EA L+A  L+ VY +YA  QGW ++VIE +  + GG++  + E+ GDKVYSKLK+EAGVHRVQRVPATETQGRVHTSTATVAIMPEVD+V V I  +DIE+ TARSGGSGGQNVNKVE+AVDL HK
Sbjct:   42 RSLAMALDPFVQSKLDSIKRTYHELTERLGDPDVIANPNSLMQVNQERMKIEEVVLSYQKWQKLGEDMVGAKQLFNE---AGNDVELKEMARAEIKDLEAQQGEIEARLVVLMLPQDPLDDRNVMLEIRAGTGGSEAGLFAGNLVDVYTRYATAQGWRVRVIEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDDVQVQIDAKDIEMHTARSGGSGGQNVNKVETAVDLLHK 299          
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A448Z911_9STRA (RF_PROK_I domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z911_9STRA)

HSP 1 Score: 322 bits (824), Expect = 6.590e-105
Identity = 166/271 (61.25%), Postives = 209/271 (77.12%), Query Frame = 1
Query:  166 RPAATSSRGSRALGMALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
            RPAA S R +     ALD+ ++ +L  I R++N LTERLGDPDVL + KL+ +V  +RAS EE+V  Y EYT   E+LEGAKE+F +   AG D EMKEMAR E++++E  +E +E K+K+LLLP DPND+RNVMLEIRAGTGG EA+++  +LL VY+KY   QGWS  +I+ +  + GG++ ++ EV GDKVYSKLK+EAGVHRVQRVPATE+ GRVHTSTATVAIMPE DEV +NI  +DIEI T RSGG+GGQNVNKVE+AVDL HK
Sbjct:   28 RPAAASWRNTNTALGALDEGMMGRLENIKRSYNALTERLGDPDVLGDSKLLQKVMSDRASSEEVVLAYDEYTGLLEELEGAKELFQD---AGDDPEMKEMARAEMKEIEPKLEPIEDKIKILLLPKDPNDDRNVMLEIRAGTGGSEASIFVGDLLDVYRKYISSQGWSANIIDESTGDDGGYKNIVMEVKGDKVYSKLKWEAGVHRVQRVPATESAGRVHTSTATVAIMPECDEVDINIDKKDIEISTMRSGGAGGQNVNKVETAVDLLHK 295          
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A4D9DHG8_9STRA (RF_PROK_I domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DHG8_9STRA)

HSP 1 Score: 320 bits (819), Expect = 9.830e-105
Identity = 161/257 (62.65%), Postives = 201/257 (78.21%), Query Frame = 1
Query:  208 MALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
            M LD FV  +L    RT+ ELTERLGDPDV+ANP  +M+V+QER ++EE+V  Y E+ K A D+ GAK++F E   A GD EMKEMAR EI+DLE   E +E ++ +L+LP+DP D+RNVMLEIRAGTGG EA L+A +L+ VY++Y    GW ++V+E +  + GG++  + E+ GDKVYSKLK+EAGVHRVQRVPATETQGRVHTSTATVA+MPEVDEV V I P+DI + TARSGGSGGQNVNKVE+AVDL HK
Sbjct:    1 MTLDPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNE---AAGDPEMKEMARAEIKDLEGRQEDIEEQLVVLMLPSDPLDDRNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHK 254          
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A7S4F4Q1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F4Q1_CHRCT)

HSP 1 Score: 322 bits (825), Expect = 1.340e-104
Identity = 162/255 (63.53%), Postives = 205/255 (80.39%), Query Frame = 1
Query:  214 LDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
            +D FVL++L  +  TF  LTERL DP++L++ + ++ V++ERA +EE V  Y +Y    E L GA+E+F E   AGGD EMKEMAREE+RDLE+ +EAL+ ++K+LLLP+DPND++NVMLEIRAGTGGDEAA+WA++LL +Y ++A EQGW  +V+  +  EAGG R    E+ GD VYSKLK+EAGVHRVQRVPATETQGR+HTSTATVAIMPEVDEV V I P+DIE+ TARSGG+GGQNVNKVE+AVDL HK
Sbjct:   80 IDRFVLDRLKLVTETFQSLTERLEDPELLSDTQEMLRVTKERAKLEETVMAYKQYLALEEQLNGARELFNE---AGGDTEMKEMAREEMRDLEDELEALDERIKVLLLPSDPNDDKNVMLEIRAGTGGDEAAIWASDLLNLYTRFAQEQGWQTRVVSLSDSEAGGCRDATIEIKGDSVYSKLKFEAGVHRVQRVPATETQGRIHTSTATVAIMPEVDEVTVTIDPKDIEMSTARSGGAGGQNVNKVETAVDLTHK 331          
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A7S3P9F9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P9F9_9STRA)

HSP 1 Score: 319 bits (818), Expect = 5.840e-104
Identity = 161/270 (59.63%), Postives = 209/270 (77.41%), Query Frame = 1
Query:  169 PAATSSRGSRALGMALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
            P   +   S AL MALD+ ++ +L  I R++N LTERLGDPDV+++  L+ +V  +R+  EE+V  Y EY++  EDL GA+E+F E   AG DA+M+EMAREE+++LE  +E LE +MK+L+LP DPNDNRNVMLEIRAGTGG EA+++A +LL VY+KY   QGW   +I+ +  + GG++ V+ E+ GD VYSKLK+EAGVHRVQRVPATE+QGRVHTSTATVAIMPE D+V V I P+DIE+ T RSGG+GGQNVNKVE+AVDL HK
Sbjct:   31 PVRLNLSSSTALTMALDEAMMSRLENIRRSYNALTERLGDPDVISDSNLLQKVMSDRSQSEEVVLAYEEYSQMLEDLAGARELFQE---AGDDADMREMAREEMKELEPKLEELEERMKILMLPKDPNDNRNVMLEIRAGTGGSEASIFAGDLLDVYRKYISSQGWQSNLIDESTGDDGGYKNVVLEIKGDMVYSKLKWEAGVHRVQRVPATESQGRVHTSTATVAIMPECDDVDVKIDPKDIELSTMRSGGAGGQNVNKVETAVDLLHK 297          
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: K9XZS4_STAC7 (Peptide chain release factor 1 n=2 Tax=Stanieria TaxID=102115 RepID=K9XZS4_STAC7)

HSP 1 Score: 316 bits (810), Expect = 2.650e-103
Identity = 153/252 (60.71%), Postives = 202/252 (80.16%), Query Frame = 1
Query:  223 FVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
            ++LE+L  +++T+ ELT RLGDPD+  NP  + ++++ R+S+EE VN Y E+ KA E+L GAKE+F E   AGGD+EM+EMA  E+  LEE +  LE+++K+LLLP DPND++N+MLEIRAGTGGDEA++WA +L+ +Y +YA  Q W++K++  ++ + GGF+  I E+ GD VYSKLK+EAGVHRVQRVP TE  GRVHTSTATVAIMPEVDEV V I P+DIE+KTARSGG+GGQNVNKVE+AVDL HK
Sbjct:    5 YLLEKLKSVEQTYQELTRRLGDPDIATNPDELQKIAKIRSSLEETVNTYEEWKKATEELAGAKEIFKE---AGGDSEMREMAALEVDQLEEKINQLESRLKILLLPRDPNDDKNIMLEIRAGTGGDEASIWAGDLVRMYSRYAESQNWNVKLVSESLADMGGFKEAILEIQGDSVYSKLKFEAGVHRVQRVPVTEAGGRVHTSTATVAIMPEVDEVEVQIDPKDIELKTARSGGAGGQNVNKVETAVDLIHK 253          
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A7S2W3G7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3G7_9STRA)

HSP 1 Score: 316 bits (810), Expect = 7.810e-103
Identity = 159/257 (61.87%), Postives = 205/257 (79.77%), Query Frame = 1
Query:  208 MALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
            MA+++F++E+L  I+RTFNELTERLGDPDV+++PKL+M ++QER+S+EE V  Y+++     +L  AKE+   S     DAEMKEMA+EE++ LE  +   E K+ +L+LP DPNDN+NV+LEIRAGTGG EA LWA +L+  Y+KYA +QGW  KV+E +  + GG +    E++G+ VYSKLKYEAGVHRVQRVPATE+QGRVHTSTATVAIMPEVDEVAV+I P+D+ I TARSGG+GGQNVNKVE+AVDL HK
Sbjct:   39 MAMNEFMVERLQSIERTFNELTERLGDPDVISDPKLMMSLTQERSSIEETVETYSQWRDMQTELGDAKELVDVSD----DAEMKEMAKEEVQTLEAGITEREDKLMVLILPKDPNDNKNVILEIRAGTGGGEACLWAGDLVSAYRKYADKQGWRFKVLEDSAGDDGGVKNAAYEISGESVYSKLKYEAGVHRVQRVPATESQGRVHTSTATVAIMPEVDEVAVHIDPKDVTITTARSGGAGGQNVNKVETAVDLLHK 291          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZD5_9PHAE1.810e-21898.47RF_PROK_I domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CKN4_9STRA1.930e-12069.65Peptide chain release factor 1 n=1 Tax=Tribonema m... [more]
A0A6S9M8F3_HETAK1.670e-10761.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A140ECK3_9STRA9.580e-10663.22Plastid peptide chain release factor 1 n=1 Tax=Mon... [more]
A0A448Z911_9STRA6.590e-10561.25RF_PROK_I domain-containing protein n=1 Tax=Pseudo... [more]
A0A4D9DHG8_9STRA9.830e-10562.65RF_PROK_I domain-containing protein n=3 Tax=Monodo... [more]
A0A7S4F4Q1_CHRCT1.340e-10463.53Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S3P9F9_9STRA5.840e-10459.63Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
K9XZS4_STAC72.650e-10360.71Peptide chain release factor 1 n=2 Tax=Stanieria T... [more]
A0A7S2W3G7_9STRA7.810e-10361.87Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7038contigEcto-sp13_S_contig7038:2166..7791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score604.0
Seed ortholog evalue4.2e-170
Seed eggNOG ortholog2880.D7FY16
Preferred nameMRF1
Model size978
KEGG koko:K02835
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005829,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006996,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009657,GO:0009658,GO:0009668,GO:0009987,GO:0010027,GO:0010467,GO:0016020,GO:0016043,GO:0016149,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032543,GO:0032544,GO:0032984,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0061024,GO:0070126,GO:0071704,GO:0071840,GO:0097159,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Exons7
EggNOG free text desc.translation release factor activity
EggNOG OGsCOG0216@1,KOG2726@2759
Ec32 ortholog descriptionpeptide chain release factor 1
Ec32 orthologEc-08_004700.1
Cds size978
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7038.18089.1prot_Ecto-sp13_S_contig7038.18089.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7038 2166..7791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463965.4094553-CDS-Ecto-sp13_S_contig7038:2165..23751681463965.4094553-CDS-Ecto-sp13_S_contig7038:2165..2375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7038 2166..2375 +
1681463965.4349904-CDS-Ecto-sp13_S_contig7038:3642..37861681463965.4349904-CDS-Ecto-sp13_S_contig7038:3642..3786Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7038 3643..3786 +
1681463965.4445038-CDS-Ecto-sp13_S_contig7038:4864..49871681463965.4445038-CDS-Ecto-sp13_S_contig7038:4864..4987Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7038 4865..4987 +
1681463965.4535906-CDS-Ecto-sp13_S_contig7038:5405..55881681463965.4535906-CDS-Ecto-sp13_S_contig7038:5405..5588Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7038 5406..5588 +
1681463965.4626498-CDS-Ecto-sp13_S_contig7038:6332..64611681463965.4626498-CDS-Ecto-sp13_S_contig7038:6332..6461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7038 6333..6461 +
1681463965.4735537-CDS-Ecto-sp13_S_contig7038:7101..72601681463965.4735537-CDS-Ecto-sp13_S_contig7038:7101..7260Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7038 7102..7260 +
1681463965.4840753-CDS-Ecto-sp13_S_contig7038:7761..77911681463965.4840753-CDS-Ecto-sp13_S_contig7038:7761..7791Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7038 7762..7791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7038.18089.1

>prot_Ecto-sp13_S_contig7038.18089.1 ID=prot_Ecto-sp13_S_contig7038.18089.1|Name=mRNA_Ecto-sp13_S_contig7038.18089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=326bp
MVSTRRSARLLCLSCALVEASGFVYSLPKVHQLRRQQQRSQQQHQHQLGA
MGSQRRPAATSSRGSRALGMALDDFVLEQLSGIDRTFNELTERLGDPDVL
ANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDA
EMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGD
EAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVY
SKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIE
IKTARSGGSGGQNVNKVESAVDLFHK
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mRNA from alignment at Ecto-sp13_S_contig7038:2166..7791+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7038.18089.1 ID=mRNA_Ecto-sp13_S_contig7038.18089.1|Name=mRNA_Ecto-sp13_S_contig7038.18089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5626bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7038:2166..7791+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTCCACGAGAAGGTCGGCGAGATTATTGTGCCTGTCATGTGCACT GGTTGAGGCGTCGGGTTTCGTCTACTCCCTCCCCAAAGTACATCAGCTGC GGAGGCAACAGCAACGTAGTCAGCAGCAACACCAACACCAGTTAGGGGCA ATGGGGAGCCAACGACGACCCGCTGCCACGTCGTCGAGGGGTTCGAGAGC CTTGGGAATGGTGAGCAGGGAGTCGTCTTTGCTCGCGGGAAAGCCCTCTG CAGCAGGAAGGAGGTCCACAGCAGTAGTCGGCAGGTTGTTGTCATGTTAT GTTTTGTTGCGGTCAGCAGGGCGGCCCCGCACTCTCACAGGCACCGTCGA CCGTCGTAGCTGGCAATGGTGGGATGGCAAACGTGTCTAGTAGTGATCAG CTACTGGGAGCAACTGCTACTGTGGGTGACACCTCTTGTAATTCGTATCA CCCCCACCACTCGGAGAACAAGCTGCTGTACCACCGTTGCACCACCATCC TGGATGACATGAGCTGCGGTTTAACACACATGTTCAACTGCTGTGCTAAT CTCAATCCCGAGGTCGGTAGATGCAAAGGGTAGAATCGTACATGACATTT TGGCCAATCTGCAGCCCAGGTGGTGCACCTCACATTAGGCAGAGAACATG TTGCTAATGCTGTGCTCCATGGGTCTATGGGGCGGACGGCTTTCCCAGTT GATTCGGTCTCGCGTCCTAATTTGGGGCGGGGAACTAATGTCTCCTCGGA TGAAACCGCAGCAGCAGCACCAGCTGTACCGAACTCCGTCTACAGGTCCG AAGCTTGCTTGCTCTGGCACCCAGCTGTACCAGTAGCGTAGGGCGGCCAG TCATTCTGCATCGCGGCGGAATGTGGCCTCTTTGGAGCGAAGGAAACGTC GGTCGTTCGATATCCAACATGAGTCGATAGTCTCGTCTGTTTCTGGCTGG ACTGGGAAAAAGAGTTGCCCATGTCTCCATCTCAGCAGTAGGAGTGGACG GAAACGGGAATGGAGCCAAACGGTTGGGTTTTTTTTGTAGCCGCGGTGCT GGATGCCATGGATAGTTTTCCCCTCAAAAAAGGATAAAGATGTACACGGT ACAAACCCCAGCAGCGGTGGGCGTTCAAAAGTGGAATAGCAACGTCCGTG GAATTGTCGTGGGTCTTGCCCCCTGCTTCTTCTTCGGCTGAGTCGCGCAA CGGAAAAAGCAACGTTTCCTTCTCTACATCAAGTAACCCCCGAGGTTCTA GCTGTGGGAGGACGACTAAGCCCTCACCCTCCACTCACCTGCCGTTGTTG TGTGAAGGACGCCCCCGTGCTCGATATTTGTTGAAAATCTACAGAAAAAC AGAGAAGACTACCCATTCGAGATCCTTACGACTACGCCCCCGCCCTCCAC TCGCCCACCGTTGTTTGTGTGATTGTCATCCCTCTGCGCGAAACTACATT TACCGGTGCCACCGGCCGCCGTCAAAGGCCCTGGATGACTTCGTGCTAGA GCAGCTGTCAGGGATAGACCGCACGTTCAACGAGCTGACCGAGCGCTTGG GCGACCCCGACGTGCTCGCGAACCCCAAGCTGATTATGGAGGTTTCTCAG GAGCGGGCCAGCGTAGAAGAGGTAAAGACGTAAGAGCATGTGCCGACCTA CTCCCACATGATTTACTTCTTCACAAGTAAAGGCGGACAAACCAATCGAG AGCGGTAGCGGGCCGGTATTAGAAGTTGCAGTTTGCATGAACTCACAGAC GGGAGGAGAGGCAATCAGGCATACAAGAGACAAAGCAATGCCCCAAGACA ATGGGTGAGTTCCAATGACTCCCTTGTCATGTGGCGTGCGATCATGGGGC CGTTGTGGCAAATATGCTAATAGGCAACCAGCTTTGTTGTGGCAAGCGTG TGCCAGAGAAACAGCCCACGTACTGCTGTACTGTGTTAAAGCAGACCTAC CGCCGTTGATATTTATGACACTCTCGTTGTTGACATCGAAAGGTTTACAC GAACAAGGACGGGAAGGAACAGACCGTCACAGACGAACCGGTACAGCCTA ACACGTTCTTTTTGTGAACGTTCTTGTGTGAACGCTTGTTTGGTGAACGT GGCGCGGTTTCATACATGCCCGTTGTGGCGAAGCCTTGGCATTGTCAGTG ACGTGCTAGGGTACACAATCCTTCCTCGCTCAGACATGGGCGCTCACTCC GGGCATAGTCTTGCAAGACACGCAAAATCGACAGAGAGCGAACGCACGCT CTACATTGCGCCGACCCGATCGTGTAAGGAGCTTTCAACTCTGTGGTTGT TTTTCTCAAGCCAGCGTTGTTTCGAAGCAGCCCCCCGTTGCTGCTTGTTG TCCTGTGTTCTCTACCAAAGGGTAAGGATACCCATGGCATTCCCCCCCTT CATCCACGCCATCAAACTCTAGTTCGAAGCTGGGCACCGCTACCGGTGTA CTCTTTGCCTACAGGGGGGGAACGTGTTGTTCGTTTTATTCCTGATTGGG ACTGAGCGTCTGCCCCTGTGTGTCATGCTTAGGAACTCGTGTATGGATAC CAAGTTGAAGGCTTGTCCGCACAACTTTTCATCGCAACGACGCATCATTT TGGATGCAGGTTATTTTTTCTTCGCACGCATTCTCAGCCCCCAAAACAAT GTGTTCTGAACTTTACCACCCACTCCCTTTTGCTTGGCATCGTGTGCAGA TCGTGAACTGCTACGCCGAGTACACAAAGGCAGCGGAAGATCTCGAAGGA GCGAAGGAAATGTTTACGGAGTCGTCCGGCGCGGGGGGCGACGCAGAGAT GAAGGAGATGGCGAGGGAGGAGGTGGGTGTGCAAACGGTCCCGGCGAACC GACTTCGCCATTGTTGCAACAAGCAGAATTTTATTTAGGACCCCAGTCTT ATAAGTGCCGCAACATGATATGGTAGAAGTATGCATTACCCTTCGGGTGT TTATTCTTGCTGTGTCCATTTTTTTCTTATGTACCCGTGCTTCTGTGTGT GTCGCTCTCTGTTATGTACTTTCTTTCTGTCTCGGTGTCTCTCTACTATC TGTCGGTCGGTCTGTCTGTCTACGTATCTCTGTCTGAATGTGTGTGCATG CCTGTCAAATTGTGTGTGTATGTCACTAATCTATGCCACATGGTTCACCT GCGCGCTTTTCTTGTACATATCTGCGTCACATAACCCGGAACCATCTGTC CCGCTACACGGACATACGCAAAAAAATATATGACAAAAAGATCCGCGATC TGGAGGAGGTAATGGAGGCACTCGAGACCAAGATGAAGCTCCTCCTCTTG CCCACGGACCCCAACGATAACCGCAACGTCATGCTCGAGATTCGCGCCGG CACGGGCGGCGACGAGGCGGCTCTGTGGGCGGCAGAACTTCTGGGAGTGT ACAAGAAGTACGCGCTCGAGCAGGTGCGTGGTGCGGCGTGTGTCCGGTCT CCAGGTTGTGCTATATTGCCAGTAGAACAATGTGGTTAGTAGACCTGTCT GTACCTCTTGGCGTGTGTGTCTGCTGTACGACCTGGACCTGCACCCATTG GCAGCTGCAGATCCAGGCCTAGTTGGCATTGGACCGTGCGGGGCTTGAAA CCCTTTTTCGCCGCAACAGTGGTGAGCGAGGGTTGTCACCGCCCTTCCTG TCCGTCCGAAGCGTCTCTTGTTGGTTCGGTCTTCGTCTAATATTCTTGTC TCTTCCACGGCCTTTTGTTTTTTCTGATTTTCTTGGCTACTTGCATTTGC GCCACCTCACATGCATAGCTTGAGATGGAAGCGTGCGTCGCCATGCGCTG CTGTGTGCAGGTTCTTCGGCTCTTCTGTATGTATCGTTTCTGGCACTCGT GTGTCTCTTAATGTCCGCGAGCCGATGCCGATGAAAACCACTTTTTTTTT TGTGTGCTCGATCCGTAGGTAACACAATATATCGATTGCGACGTCGTTGA CAGGACGACAGCTGTAGTCATCGACCAACCAAAAGGCTGCCGAGTGCCCG CAAGCCCCCATCCCGTCCGTCCCGTCGAATACACGGAGACTTTCCAACTC GCGCTACTGCTGTCCTATTTTACGCTCTTGACCTAATTTCCCGATATCAC TCACCGCACTTACCGGTATTATCAGCCGCTCGTAATCATTATCCATCTCC GCGCGATTGATCACCAGGGGTGGAGCCTTAAAGTCATCGAGAGCGCCATG GTCGAGGCGGGGGGGTTCCGCACCGTGATTGCGGAAGTGAACGGGGACAA GGTCTACAGCAAGCTCAAGTACGAGGCGGGGGTCCACCGCGTACAGGTGC GTGATTTTTCTTGTACCGATGTTCGGCATCTATTTACAACATGGTACGTT ACCGCGCGCACACCGCATGGGAGTTTGTTTCCACGGTCGCTTTGCTTGGA GACAAGGGGCGGGCCCAAATGCAGGAAGGTATTTGGGCACGATAAGCAAC AATGCAGACCGTTGAAATGTAGCCAGAGACGTTTAAGGGCGTCCGACTGC TGGTGGCATGTCTCCTAGGAGAAGGGACGAACAGTTACCAGTGCTCCGAT CGGAAGGAAACAAATGGGTACCCCCCCCCCCCCGTTACACGGGTTACACG GAATAGCAAAACCTTTGGCACAGCACACGCGAGGATGATGACCAGCTTCA TCATCGTGAAACGTAGATGACCTAGGCCGGTGAAAATCCGGTAGCAATCG CGCCTTCGTCCCGGCATTGTAGGGATGCAACAAGGTCTGACGACTACGCC ATGCTTTTACAGCGTATCGCTCTTCCGTTCCAGCATTGCAATGATGCGAG GCCAACAGTCTGACGACAACTTCGGCATACATTGACAGCATATCACTCCA TACCAGCGTTGTAGGGATGCAAAGGTCTAACGACGACGGTATGCGTTTAC ACGAGTACCCCCCCCCCCCCCCCCCCCCCTGTGCAGCGAGTGCCGGCTAC CGAGACCCAGGGGCGGGTGCACACCAGCACGGCCACGGTGGCGATCATGC CCGAGGTGGACGAGGTGGCCGTCAATATCCGCCCTGAGGACATCGAGATC AAGACAGCCCGCTCGGGGGGATCGGGCGGGCAGAACGTCAACAAGGTAGG CACGAAGAGGGTGGCGGTCGATCGCAGTGGCGTGAGTCTTGTTGAGGTGG TGGTGGTGGTGTGGCGAGATGTCGTTCGTTTGTTGTATGTGGACAGCGAC AATATGTGAATCTGTCCTGCTGCTGCTGCTGCTGCTGATGTGGAAGATGC CGTTGTATATGGACAAGTAGAAGCTACGTCAGTAGCCGTGGTGGCGGTGG CCAAAAGGAAGGGGGGCAACAACGAAGTCCGCCGTCACGAGTGTTGTTGG AATTCAGATCACCCTTCACGCCGTGGCCCAGTTTTTCCTCATGGCGCCCC CCCCCCTCCCTGTCCTGGTGTAACAAAACGTCTTCCTGGTGCTTGAAATC CCGACGCCTCCGTCTTTTCTCGTGTAGGGGATGCGGAGGAATTGTGTCGG GGATGAGAGGGATTGTGGCCCAACAAAAACAGCCTCCATGAGCACGGTGT GAACCCTCCCCTCCCATCCATCGCGCCCTGATGAAACCCAAAACAGGTCG AGTCCGCCGTGGATCTCTTCCACAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7038:2166..7791+

>mRNA_Ecto-sp13_S_contig7038.18089.1 ID=mRNA_Ecto-sp13_S_contig7038.18089.1|Name=mRNA_Ecto-sp13_S_contig7038.18089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=978bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7038:2166..7791+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTCCACGAGAAGGTCGGCGAGATTATTGTGCCTGTCATGTGCACT
GGTTGAGGCGTCGGGTTTCGTCTACTCCCTCCCCAAAGTACATCAGCTGC
GGAGGCAACAGCAACGTAGTCAGCAGCAACACCAACACCAGTTAGGGGCA
ATGGGGAGCCAACGACGACCCGCTGCCACGTCGTCGAGGGGTTCGAGAGC
CTTGGGAATGGCCCTGGATGACTTCGTGCTAGAGCAGCTGTCAGGGATAG
ACCGCACGTTCAACGAGCTGACCGAGCGCTTGGGCGACCCCGACGTGCTC
GCGAACCCCAAGCTGATTATGGAGGTTTCTCAGGAGCGGGCCAGCGTAGA
AGAGATCGTGAACTGCTACGCCGAGTACACAAAGGCAGCGGAAGATCTCG
AAGGAGCGAAGGAAATGTTTACGGAGTCGTCCGGCGCGGGGGGCGACGCA
GAGATGAAGGAGATGGCGAGGGAGGAGATCCGCGATCTGGAGGAGGTAAT
GGAGGCACTCGAGACCAAGATGAAGCTCCTCCTCTTGCCCACGGACCCCA
ACGATAACCGCAACGTCATGCTCGAGATTCGCGCCGGCACGGGCGGCGAC
GAGGCGGCTCTGTGGGCGGCAGAACTTCTGGGAGTGTACAAGAAGTACGC
GCTCGAGCAGGGGTGGAGCCTTAAAGTCATCGAGAGCGCCATGGTCGAGG
CGGGGGGGTTCCGCACCGTGATTGCGGAAGTGAACGGGGACAAGGTCTAC
AGCAAGCTCAAGTACGAGGCGGGGGTCCACCGCGTACAGCGAGTGCCGGC
TACCGAGACCCAGGGGCGGGTGCACACCAGCACGGCCACGGTGGCGATCA
TGCCCGAGGTGGACGAGGTGGCCGTCAATATCCGCCCTGAGGACATCGAG
ATCAAGACAGCCCGCTCGGGGGGATCGGGCGGGCAGAACGTCAACAAGGT
CGAGTCCGCCGTGGATCTCTTCCACAAG
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