mRNA_Ecto-sp13_S_contig7038.18089.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A6H5KZD5_9PHAE (RF_PROK_I domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZD5_9PHAE) HSP 1 Score: 611 bits (1576), Expect = 1.810e-218 Identity = 321/326 (98.47%), Postives = 323/326 (99.08%), Query Frame = 1
Query: 1 MVSTRRSARLLCLSCALVEASGFVYSLPKVHQLRRQQQRSQQQHQHQLGAMGSQRRPAATSSRGSRALGMALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
M STRRSARLLCLSCAL EA GF+YSLPKVHQLRRQQQRSQQQHQHQLGAMGSQRRPAATSSRGSRALGMALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEV+GDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK
Sbjct: 1 MSSTRRSARLLCLSCALAEALGFIYSLPKVHQLRRQQQRSQQQHQHQLGAMGSQRRPAATSSRGSRALGMALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVSGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 326
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A836CKN4_9STRA (Peptide chain release factor 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKN4_9STRA) HSP 1 Score: 360 bits (923), Expect = 1.930e-120 Identity = 179/257 (69.65%), Postives = 216/257 (84.05%), Query Frame = 1
Query: 208 MALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
MALDDFV+ QL GI+R++NE+TERLGDPDVLA+ K +ME+S++RA +E +V + EY A L GA EMF ES+G DAE++EMAREE+RDLE ME +E +KL+LLPTDPND RNVMLEIRAGTGGDEAA+WA +LL VY+KYA E GW+L+V+E A + GGF++++AEV GD VYSKLKYEAGVHRVQRVPATE+QGRVHTSTATVA+MPEVDEV V I P DI++ TAR+GGSGGQNVNKVE+AVDLFHK
Sbjct: 1 MALDDFVVRQLGGIERSYNEMTERLGDPDVLADSKKLMEISKDRAKMEGVVTMFGEYKDALAQLGGATEMFQESAG---DAELREMAREEMRDLEARMERMEVDLKLMLLPTDPNDERNVMLEIRAGTGGDEAAIWAGDLLNVYRKYATEMGWTLRVVEEAAADMGGFKSIVAEVRGDAVYSKLKYEAGVHRVQRVPATESQGRVHTSTATVAVMPEVDEVTVRIDPGDIDMHTARAGGSGGQNVNKVETAVDLFHK 254
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A6S9M8F3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9M8F3_HETAK) HSP 1 Score: 328 bits (842), Expect = 1.670e-107 Identity = 167/270 (61.85%), Postives = 209/270 (77.41%), Query Frame = 1
Query: 169 PAATSSRGSRALGMALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
P + + S L MA+ ++ ++L GI++TFN+LT L DPDVL + K +M++S+ER+ +EEIV + EY DL GAKE+F+ES+G D EM+EMAR+EI + E VM+ L+ K+K+LLLPTDPND RN MLEIRAGTGGDEA +WA +L+ VYKKYA QGW+ +IE + + GG ++ EV G+ VYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEV V I P+DIE+ TARSGG+GGQNVNKVE+A DLFHK
Sbjct: 36 PHPVARKTSGGLKMAIPSYMQDKLKGIEQTFNQLTNSLADPDVLNDSKQLMKISKERSKLEEIVEAFQEYKSREADLTGAKELFSESAG---DPEMREMARDEIDECETVMDELQEKLKILLLPTDPNDERNCMLEIRAGTGGDEAGIWAGDLVEVYKKYAQTQGWACTLIEESAADMGGVKSCTLEVRGEAVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVTVKIDPKDIELTTARSGGAGGQNVNKVETAADLFHK 302
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A140ECK3_9STRA (Plastid peptide chain release factor 1 n=1 Tax=Monodopsis sp. MarTras21 TaxID=1745953 RepID=A0A140ECK3_9STRA) HSP 1 Score: 324 bits (830), Expect = 9.580e-106 Identity = 165/261 (63.22%), Postives = 204/261 (78.16%), Query Frame = 1
Query: 196 RALGMALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
R+L MALD FV +L I RT++ELTERLGDPDV+ANP +M+V+QER +EE+V Y ++ K ED+ GAK++F E AG D E+KEMAR EI+DLE +E ++ +L+LP DP D+RNVMLEIRAGTGG EA L+A L+ VY +YA QGW ++VIE + + GG++ + E+ GDKVYSKLK+EAGVHRVQRVPATETQGRVHTSTATVAIMPEVD+V V I +DIE+ TARSGGSGGQNVNKVE+AVDL HK
Sbjct: 42 RSLAMALDPFVQSKLDSIKRTYHELTERLGDPDVIANPNSLMQVNQERMKIEEVVLSYQKWQKLGEDMVGAKQLFNE---AGNDVELKEMARAEIKDLEAQQGEIEARLVVLMLPQDPLDDRNVMLEIRAGTGGSEAGLFAGNLVDVYTRYATAQGWRVRVIEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDDVQVQIDAKDIEMHTARSGGSGGQNVNKVETAVDLLHK 299
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A448Z911_9STRA (RF_PROK_I domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z911_9STRA) HSP 1 Score: 322 bits (824), Expect = 6.590e-105 Identity = 166/271 (61.25%), Postives = 209/271 (77.12%), Query Frame = 1
Query: 166 RPAATSSRGSRALGMALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
RPAA S R + ALD+ ++ +L I R++N LTERLGDPDVL + KL+ +V +RAS EE+V Y EYT E+LEGAKE+F + AG D EMKEMAR E++++E +E +E K+K+LLLP DPND+RNVMLEIRAGTGG EA+++ +LL VY+KY QGWS +I+ + + GG++ ++ EV GDKVYSKLK+EAGVHRVQRVPATE+ GRVHTSTATVAIMPE DEV +NI +DIEI T RSGG+GGQNVNKVE+AVDL HK
Sbjct: 28 RPAAASWRNTNTALGALDEGMMGRLENIKRSYNALTERLGDPDVLGDSKLLQKVMSDRASSEEVVLAYDEYTGLLEELEGAKELFQD---AGDDPEMKEMARAEMKEIEPKLEPIEDKIKILLLPKDPNDDRNVMLEIRAGTGGSEASIFVGDLLDVYRKYISSQGWSANIIDESTGDDGGYKNIVMEVKGDKVYSKLKWEAGVHRVQRVPATESAGRVHTSTATVAIMPECDEVDINIDKKDIEISTMRSGGAGGQNVNKVETAVDLLHK 295
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A4D9DHG8_9STRA (RF_PROK_I domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DHG8_9STRA) HSP 1 Score: 320 bits (819), Expect = 9.830e-105 Identity = 161/257 (62.65%), Postives = 201/257 (78.21%), Query Frame = 1
Query: 208 MALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
M LD FV +L RT+ ELTERLGDPDV+ANP +M+V+QER ++EE+V Y E+ K A D+ GAK++F E A GD EMKEMAR EI+DLE E +E ++ +L+LP+DP D+RNVMLEIRAGTGG EA L+A +L+ VY++Y GW ++V+E + + GG++ + E+ GDKVYSKLK+EAGVHRVQRVPATETQGRVHTSTATVA+MPEVDEV V I P+DI + TARSGGSGGQNVNKVE+AVDL HK
Sbjct: 1 MTLDPFVQTKLESFSRTYKELTERLGDPDVIANPTTLMQVNQERMNIEEVVVSYQEWQKLAADMAGAKQLFNE---AAGDPEMKEMARAEIKDLEGRQEDIEEQLVVLMLPSDPLDDRNVMLEIRAGTGGSEAGLFAGDLVDVYQRYGQSLGWRVRVVEDSRNDEGGYKNAVLEIQGDKVYSKLKFEAGVHRVQRVPATETQGRVHTSTATVAVMPEVDEVQVKIDPKDITLTTARSGGSGGQNVNKVETAVDLLHK 254
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A7S4F4Q1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F4Q1_CHRCT) HSP 1 Score: 322 bits (825), Expect = 1.340e-104 Identity = 162/255 (63.53%), Postives = 205/255 (80.39%), Query Frame = 1
Query: 214 LDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
+D FVL++L + TF LTERL DP++L++ + ++ V++ERA +EE V Y +Y E L GA+E+F E AGGD EMKEMAREE+RDLE+ +EAL+ ++K+LLLP+DPND++NVMLEIRAGTGGDEAA+WA++LL +Y ++A EQGW +V+ + EAGG R E+ GD VYSKLK+EAGVHRVQRVPATETQGR+HTSTATVAIMPEVDEV V I P+DIE+ TARSGG+GGQNVNKVE+AVDL HK
Sbjct: 80 IDRFVLDRLKLVTETFQSLTERLEDPELLSDTQEMLRVTKERAKLEETVMAYKQYLALEEQLNGARELFNE---AGGDTEMKEMAREEMRDLEDELEALDERIKVLLLPSDPNDDKNVMLEIRAGTGGDEAAIWASDLLNLYTRFAQEQGWQTRVVSLSDSEAGGCRDATIEIKGDSVYSKLKFEAGVHRVQRVPATETQGRIHTSTATVAIMPEVDEVTVTIDPKDIEMSTARSGGAGGQNVNKVETAVDLTHK 331
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A7S3P9F9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P9F9_9STRA) HSP 1 Score: 319 bits (818), Expect = 5.840e-104 Identity = 161/270 (59.63%), Postives = 209/270 (77.41%), Query Frame = 1
Query: 169 PAATSSRGSRALGMALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
P + S AL MALD+ ++ +L I R++N LTERLGDPDV+++ L+ +V +R+ EE+V Y EY++ EDL GA+E+F E AG DA+M+EMAREE+++LE +E LE +MK+L+LP DPNDNRNVMLEIRAGTGG EA+++A +LL VY+KY QGW +I+ + + GG++ V+ E+ GD VYSKLK+EAGVHRVQRVPATE+QGRVHTSTATVAIMPE D+V V I P+DIE+ T RSGG+GGQNVNKVE+AVDL HK
Sbjct: 31 PVRLNLSSSTALTMALDEAMMSRLENIRRSYNALTERLGDPDVISDSNLLQKVMSDRSQSEEVVLAYEEYSQMLEDLAGARELFQE---AGDDADMREMAREEMKELEPKLEELEERMKILMLPKDPNDNRNVMLEIRAGTGGSEASIFAGDLLDVYRKYISSQGWQSNLIDESTGDDGGYKNVVLEIKGDMVYSKLKWEAGVHRVQRVPATESQGRVHTSTATVAIMPECDDVDVKIDPKDIELSTMRSGGAGGQNVNKVETAVDLLHK 297
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: K9XZS4_STAC7 (Peptide chain release factor 1 n=2 Tax=Stanieria TaxID=102115 RepID=K9XZS4_STAC7) HSP 1 Score: 316 bits (810), Expect = 2.650e-103 Identity = 153/252 (60.71%), Postives = 202/252 (80.16%), Query Frame = 1
Query: 223 FVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
++LE+L +++T+ ELT RLGDPD+ NP + ++++ R+S+EE VN Y E+ KA E+L GAKE+F E AGGD+EM+EMA E+ LEE + LE+++K+LLLP DPND++N+MLEIRAGTGGDEA++WA +L+ +Y +YA Q W++K++ ++ + GGF+ I E+ GD VYSKLK+EAGVHRVQRVP TE GRVHTSTATVAIMPEVDEV V I P+DIE+KTARSGG+GGQNVNKVE+AVDL HK
Sbjct: 5 YLLEKLKSVEQTYQELTRRLGDPDIATNPDELQKIAKIRSSLEETVNTYEEWKKATEELAGAKEIFKE---AGGDSEMREMAALEVDQLEEKINQLESRLKILLLPRDPNDDKNIMLEIRAGTGGDEASIWAGDLVRMYSRYAESQNWNVKLVSESLADMGGFKEAILEIQGDSVYSKLKFEAGVHRVQRVPVTEAGGRVHTSTATVAIMPEVDEVEVQIDPKDIELKTARSGGAGGQNVNKVETAVDLIHK 253
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Match: A0A7S2W3G7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3G7_9STRA) HSP 1 Score: 316 bits (810), Expect = 7.810e-103 Identity = 159/257 (61.87%), Postives = 205/257 (79.77%), Query Frame = 1
Query: 208 MALDDFVLEQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAKEMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDNRNVMLEIRAGTGGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEAGVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKVESAVDLFHK 978
MA+++F++E+L I+RTFNELTERLGDPDV+++PKL+M ++QER+S+EE V Y+++ +L AKE+ S DAEMKEMA+EE++ LE + E K+ +L+LP DPNDN+NV+LEIRAGTGG EA LWA +L+ Y+KYA +QGW KV+E + + GG + E++G+ VYSKLKYEAGVHRVQRVPATE+QGRVHTSTATVAIMPEVDEVAV+I P+D+ I TARSGG+GGQNVNKVE+AVDL HK
Sbjct: 39 MAMNEFMVERLQSIERTFNELTERLGDPDVISDPKLMMSLTQERSSIEETVETYSQWRDMQTELGDAKELVDVSD----DAEMKEMAKEEVQTLEAGITEREDKLMVLILPKDPNDNKNVILEIRAGTGGGEACLWAGDLVSAYRKYADKQGWRFKVLEDSAGDDGGVKNAAYEISGESVYSKLKYEAGVHRVQRVPATESQGRVHTSTATVAIMPEVDEVAVHIDPKDVTITTARSGGAGGQNVNKVETAVDLLHK 291 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7038.18089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7038.18089.1 >prot_Ecto-sp13_S_contig7038.18089.1 ID=prot_Ecto-sp13_S_contig7038.18089.1|Name=mRNA_Ecto-sp13_S_contig7038.18089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=326bp MVSTRRSARLLCLSCALVEASGFVYSLPKVHQLRRQQQRSQQQHQHQLGAback to top mRNA from alignment at Ecto-sp13_S_contig7038:2166..7791+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7038.18089.1 ID=mRNA_Ecto-sp13_S_contig7038.18089.1|Name=mRNA_Ecto-sp13_S_contig7038.18089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5626bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7038:2166..7791+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7038:2166..7791+ >mRNA_Ecto-sp13_S_contig7038.18089.1 ID=mRNA_Ecto-sp13_S_contig7038.18089.1|Name=mRNA_Ecto-sp13_S_contig7038.18089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=978bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7038:2166..7791+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |