mRNA_Ecto-sp13_S_contig70227.18073.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: A0A5B0WXY5_9GAMM (SDR family oxidoreductase n=1 Tax=Pseudohalioglobus sp. NY5 TaxID=2606449 RepID=A0A5B0WXY5_9GAMM) HSP 1 Score: 161 bits (407), Expect = 1.420e-46 Identity = 83/144 (57.64%), Postives = 105/144 (72.92%), Query Frame = 1
Query: 1 AVLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKELDSKIRESDPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRDDLDALIERADEIIDQDGYALRL 432
AVL M+ G G +INV SY G + +SAYSTSK AL+RL++ A + D+G+S F ISPGFVWTDM +E D +R DP+Y+GMD+ W+FP E AA LC RLA G+ADRLSGRMIHVRDDLD +++ AD+II + Y LRL
Sbjct: 122 AVLPGMLARGEGRIINVASYAGNSVGPGSSAYSTSKTALLRLTEGTAADVADAGLSAFAISPGFVWTDMGREYDQILRAQDPDYQGMDDDWVFPPEAAACLCSRLATGEADRLSGRMIHVRDDLDHMLQCADDIIANERYLLRL 265
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: A0A1Q9NBW7_9ARCH (3-oxoacyl-[acyl-carrier-protein] reductase FabG n=1 Tax=Candidatus Heimdallarchaeota archaeon LC_3 TaxID=1841598 RepID=A0A1Q9NBW7_9ARCH) HSP 1 Score: 109 bits (273), Expect = 1.870e-26 Identity = 64/144 (44.44%), Postives = 94/144 (65.28%), Query Frame = 1
Query: 1 AVLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKELDSKIRESDPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRDDLDALIERADEIIDQDGYALRL 432
AVL +M+ G +IN+GSY G+ P +AS+YS SKAAL+R SD A+S+ + G++VFT+SPG V TDMTK++ ++ + P DEAW E ++L ++L D L+GR IHV +LD LI+++D+I + Y LRL
Sbjct: 132 AVLTNMIANKSGTIINMGSYAGIRPLPYASSYSVSKAALIRFSDSIAESVKEYGINVFTVSPGLVLTDMTKDV--QVFKDLP-----DEAWSS-IEKISELVVQLLLKDVSSLTGRFIHVNQELDGLIQKSDKIQKEGLYTLRL 267
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: A0A2W6DLA1_9PSEU (NAD(P)-dependent oxidoreductase n=1 Tax=Pseudonocardiales bacterium TaxID=2201155 RepID=A0A2W6DLA1_9PSEU) HSP 1 Score: 101 bits (252), Expect = 2.260e-23 Identity = 70/151 (46.36%), Postives = 84/151 (55.63%), Query Frame = 1
Query: 1 AVLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKELDSKIRESDPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHV-RDDLDALIERADEIIDQDGYALRLTMALDD 450
AVL MV GRG +INV S G+ T SAYS SKAAL RL+DC A SLD V+VF +SPG V T MT + + D+ W PA L LA+G AD LSGR +H RD+LD L+ RA I++ D LRL DD
Sbjct: 127 AVLPGMVQRGRGRIINVNSGFGLRGTATYSAYSVSKAALARLTDCLAQSLDGQPVAVFDLSPGLVRTAMTTTMPMWA-------DAGDDDWTSPAV-VVDAVLTLASGSADALSGRFLHAARDNLDDLVARAGAILESDARTLRLRPYGDD 269
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: A0A6B2LZV0_9BACT (SDR family oxidoreductase n=1 Tax=Oceanipulchritudo coccoides TaxID=2706888 RepID=A0A6B2LZV0_9BACT) HSP 1 Score: 99.4 bits (246), Expect = 1.570e-22 Identity = 67/144 (46.53%), Postives = 88/144 (61.11%), Query Frame = 1
Query: 4 VLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKELDSKIRESDPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRD-DLDALIERADEIIDQDGYALRL 432
V+ DM+ RG +I VGS + P ASAYS SKA L+RL D A +L + G++VFTISPG V T+MTK++ PE D W P E A+LC+ LA+G AD L+GR IH + DLD LI RA+EI ++ +RL
Sbjct: 132 VIPDMIERKRGRIIMVGSNMAFWPYPVASAYSCSKAGLVRLGDNLAVALKEHGIAVFTISPGLVRTEMTKDI--------PEEFVADAEWT-PIEKPAELCVALASGKADALTGRYIHSSEHDLDELIARAEEIEGKNLQTMRL 266
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: A0A3D4WUN6_9ACTN (Uncharacterized protein n=1 Tax=Micromonosporaceae bacterium TaxID=1873464 RepID=A0A3D4WUN6_9ACTN) HSP 1 Score: 99.8 bits (247), Expect = 2.090e-22 Identity = 64/149 (42.95%), Postives = 84/149 (56.38%), Query Frame = 1
Query: 1 AVLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKE--LDSKIRESDPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRDDLDALIERADEIIDQDGYALRLTMA 441
AVL MVT RGC+IN+ S G+ + SAY+ SKAAL+RL++ A + GVSVF + PG V T M + P + EA PAE A LC+ LA+G AD LSGR + V D+ AL++RA EI + Y +RL A
Sbjct: 152 AVLAGMVTRRRGCIINIASGSGLQAAPYQSAYTVSKAALIRLTETLAAETHEHGVSVFAVGPGAVLTSMADRGRASADFARWIPHFIPRIEAHATPAERPAALCVLLASGQADALSGRFVSVAMDVPALVQRAAEIQRDELYTMRLRTA 300
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: W0RJJ5_9BACT (Short-chain dehydrogenase/reductase SDR n=1 Tax=Gemmatirosa kalamazoonesis TaxID=861299 RepID=W0RJJ5_9BACT) HSP 1 Score: 97.4 bits (241), Expect = 9.310e-22 Identity = 70/147 (47.62%), Postives = 85/147 (57.82%), Query Frame = 1
Query: 1 AVLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKELDSKI--RESDPEYEG-MDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRDDLDALIERADEIIDQDGYALRL 432
A L MV GRG V+NV S G +ASAY TSK AL RL++ AA GV VF I PG V T MT+EL S R P Y DE +DAA+L +RLAAGDAD L+GR++ DDLDAL+ A+ I ++ LRL
Sbjct: 125 AALSRMVPRGRGRVVNVSSRAGNAAIPFASAYVTSKTALTRLTEVAAAEARPYGVFVFAIEPGTVRTAMTEELMSSDAGRAWLPWYRATFDEGRDASPDDAARLVVRLAAGDADPLAGRLVSRADDLDALVADAERIAREERLVLRL 271
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: B5JNB0_9BACT (Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=Verrucomicrobiae bacterium DG1235 TaxID=382464 RepID=B5JNB0_9BACT) HSP 1 Score: 97.4 bits (241), Expect = 1.070e-21 Identity = 61/144 (42.36%), Postives = 80/144 (55.56%), Query Frame = 1
Query: 1 AVLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKELDSKIRESDPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRDDLDALIERADEIIDQDGYALRL 432
AVL M+ G +IN+GSY + P Y+ SKAAL+RLSD A S G+SVFT+SPG V TDMT+++ ++ PE AW +D KL L++G LSGR IHV DDL L + D I ++ Y L L
Sbjct: 138 AVLDSMIARQSGTIINMGSYASIRPIEGNPGYAASKAALVRLSDSLAVSTKPHGISVFTVSPGLVLTDMTRDVPI-FKDLPPE------AWSS-IDDICKLVANLSSGSYSALSGRFIHVNDDLQQLAQNLDRIKSENLYTLHL 273
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: A0A641ARS4_9ACTN (SDR family oxidoreductase n=1 Tax=Aeromicrobium fastidiosum TaxID=52699 RepID=A0A641ARS4_9ACTN) HSP 1 Score: 97.4 bits (241), Expect = 1.270e-21 Identity = 60/151 (39.74%), Postives = 84/151 (55.63%), Query Frame = 1
Query: 1 AVLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKELDSKIRES----DPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRDDLDALIERADEIIDQDGYALRLTMA 441
AVL MV G GC++NVGSY G P + SAYS +KAA+ +++ A + + GV+ FT+ P V T T LDS + PE + E PA +RL G AD +SGR++ V DL+A+ ER++EI + Y LR+T A
Sbjct: 130 AVLPSMVERGSGCIVNVGSYFGYQPKAYRSAYSAAKAAVHTMTEVLATEVAEHGVTAFTLDPAMVKT--TLLLDSAASDQAARWTPEATDLPEDGYTPAAAVGDFVVRLVLGAADGMSGRVVRVHSDLEAMDERSEEIRRDEHYVLRMTKA 278
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: A0A538HGM9_9ACTN (SDR family oxidoreductase n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538HGM9_9ACTN) HSP 1 Score: 94.4 bits (233), Expect = 1.240e-20 Identity = 61/145 (42.07%), Postives = 82/145 (56.55%), Query Frame = 1
Query: 1 AVLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKEL--DSKIRESDPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRDDLDALIERADEIIDQDGYALR 429
AVL MV G G ++ + SY P W+S Y + +AAL+R D A +++ GV+VF +SPGFV T++ + + R PE +A E A +L LA G AD L+GR +HV DDLD L+ RADEI D YALR
Sbjct: 121 AVLPGMVERGAGRIVVLSSYAANVPRPWSSGYGSGRAALLRFIDSLAGEVEERGVAVFAVSPGFVRTELVENVIRSEAGRRYLPELGERTDA--LAPELAGELVAELATGRADALTGRFLHVLDDLDDLVARADEIRANDLYALR 263
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: A0A538DBS8_9ACTN (SDR family oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538DBS8_9ACTN) HSP 1 Score: 93.6 bits (231), Expect = 2.400e-20 Identity = 60/144 (41.67%), Postives = 81/144 (56.25%), Query Frame = 1
Query: 4 VLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKELDSKI--RESDPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRDDLDALIERADEIIDQDGYALR 429
VL M+ G G ++ V SY +P ++S Y++ KAAL+R D A + D GV VF ++PGFV T + E+ R PE +A E +L + LA+G AD LSGR +HV DDLD LI RA++I D YALR
Sbjct: 122 VLPGMIAGGSGRIVAVSSYAANDPRPYSSGYASGKAALLRFVDSVAAEVADHGVYVFAVTPGFVRTRLVDEVAQSTAGRRWLPELAERQDA--LEPERVGRLVVELASGRADALSGRFLHVLDDLDDLIARAEQISRDDRYALR 263 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig70227.18073.1 >prot_Ecto-sp13_S_contig70227.18073.1 ID=prot_Ecto-sp13_S_contig70227.18073.1|Name=mRNA_Ecto-sp13_S_contig70227.18073.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp MVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVback to top mRNA from alignment at Ecto-sp13_S_contig70227:2..457+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig70227.18073.1 ID=mRNA_Ecto-sp13_S_contig70227.18073.1|Name=mRNA_Ecto-sp13_S_contig70227.18073.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70227:2..457+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70227:2..457+ >mRNA_Ecto-sp13_S_contig70227.18073.1 ID=mRNA_Ecto-sp13_S_contig70227.18073.1|Name=mRNA_Ecto-sp13_S_contig70227.18073.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70227:2..457+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |