mRNA_Ecto-sp13_S_contig70227.18073.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70227.18073.1
Unique NamemRNA_Ecto-sp13_S_contig70227.18073.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: A0A5B0WXY5_9GAMM (SDR family oxidoreductase n=1 Tax=Pseudohalioglobus sp. NY5 TaxID=2606449 RepID=A0A5B0WXY5_9GAMM)

HSP 1 Score: 161 bits (407), Expect = 1.420e-46
Identity = 83/144 (57.64%), Postives = 105/144 (72.92%), Query Frame = 1
Query:    1 AVLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKELDSKIRESDPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRDDLDALIERADEIIDQDGYALRL 432
            AVL  M+  G G +INV SY G +    +SAYSTSK AL+RL++  A  + D+G+S F ISPGFVWTDM +E D  +R  DP+Y+GMD+ W+FP E AA LC RLA G+ADRLSGRMIHVRDDLD +++ AD+II  + Y LRL
Sbjct:  122 AVLPGMLARGEGRIINVASYAGNSVGPGSSAYSTSKTALLRLTEGTAADVADAGLSAFAISPGFVWTDMGREYDQILRAQDPDYQGMDDDWVFPPEAAACLCSRLATGEADRLSGRMIHVRDDLDHMLQCADDIIANERYLLRL 265          
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: A0A1Q9NBW7_9ARCH (3-oxoacyl-[acyl-carrier-protein] reductase FabG n=1 Tax=Candidatus Heimdallarchaeota archaeon LC_3 TaxID=1841598 RepID=A0A1Q9NBW7_9ARCH)

HSP 1 Score: 109 bits (273), Expect = 1.870e-26
Identity = 64/144 (44.44%), Postives = 94/144 (65.28%), Query Frame = 1
Query:    1 AVLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKELDSKIRESDPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRDDLDALIERADEIIDQDGYALRL 432
            AVL +M+    G +IN+GSY G+ P  +AS+YS SKAAL+R SD  A+S+ + G++VFT+SPG V TDMTK++  ++ +  P     DEAW    E  ++L ++L   D   L+GR IHV  +LD LI+++D+I  +  Y LRL
Sbjct:  132 AVLTNMIANKSGTIINMGSYAGIRPLPYASSYSVSKAALIRFSDSIAESVKEYGINVFTVSPGLVLTDMTKDV--QVFKDLP-----DEAWSS-IEKISELVVQLLLKDVSSLTGRFIHVNQELDGLIQKSDKIQKEGLYTLRL 267          
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: A0A2W6DLA1_9PSEU (NAD(P)-dependent oxidoreductase n=1 Tax=Pseudonocardiales bacterium TaxID=2201155 RepID=A0A2W6DLA1_9PSEU)

HSP 1 Score: 101 bits (252), Expect = 2.260e-23
Identity = 70/151 (46.36%), Postives = 84/151 (55.63%), Query Frame = 1
Query:    1 AVLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKELDSKIRESDPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHV-RDDLDALIERADEIIDQDGYALRLTMALDD 450
            AVL  MV  GRG +INV S  G+  T   SAYS SKAAL RL+DC A SLD   V+VF +SPG V T MT  +           +  D+ W  PA       L LA+G AD LSGR +H  RD+LD L+ RA  I++ D   LRL    DD
Sbjct:  127 AVLPGMVQRGRGRIINVNSGFGLRGTATYSAYSVSKAALARLTDCLAQSLDGQPVAVFDLSPGLVRTAMTTTMPMWA-------DAGDDDWTSPAV-VVDAVLTLASGSADALSGRFLHAARDNLDDLVARAGAILESDARTLRLRPYGDD 269          
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: A0A6B2LZV0_9BACT (SDR family oxidoreductase n=1 Tax=Oceanipulchritudo coccoides TaxID=2706888 RepID=A0A6B2LZV0_9BACT)

HSP 1 Score: 99.4 bits (246), Expect = 1.570e-22
Identity = 67/144 (46.53%), Postives = 88/144 (61.11%), Query Frame = 1
Query:    4 VLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKELDSKIRESDPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRD-DLDALIERADEIIDQDGYALRL 432
            V+ DM+   RG +I VGS +   P   ASAYS SKA L+RL D  A +L + G++VFTISPG V T+MTK++        PE    D  W  P E  A+LC+ LA+G AD L+GR IH  + DLD LI RA+EI  ++   +RL
Sbjct:  132 VIPDMIERKRGRIIMVGSNMAFWPYPVASAYSCSKAGLVRLGDNLAVALKEHGIAVFTISPGLVRTEMTKDI--------PEEFVADAEWT-PIEKPAELCVALASGKADALTGRYIHSSEHDLDELIARAEEIEGKNLQTMRL 266          
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: A0A3D4WUN6_9ACTN (Uncharacterized protein n=1 Tax=Micromonosporaceae bacterium TaxID=1873464 RepID=A0A3D4WUN6_9ACTN)

HSP 1 Score: 99.8 bits (247), Expect = 2.090e-22
Identity = 64/149 (42.95%), Postives = 84/149 (56.38%), Query Frame = 1
Query:    1 AVLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKE--LDSKIRESDPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRDDLDALIERADEIIDQDGYALRLTMA 441
            AVL  MVT  RGC+IN+ S  G+    + SAY+ SKAAL+RL++  A    + GVSVF + PG V T M       +      P +    EA   PAE  A LC+ LA+G AD LSGR + V  D+ AL++RA EI   + Y +RL  A
Sbjct:  152 AVLAGMVTRRRGCIINIASGSGLQAAPYQSAYTVSKAALIRLTETLAAETHEHGVSVFAVGPGAVLTSMADRGRASADFARWIPHFIPRIEAHATPAERPAALCVLLASGQADALSGRFVSVAMDVPALVQRAAEIQRDELYTMRLRTA 300          
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: W0RJJ5_9BACT (Short-chain dehydrogenase/reductase SDR n=1 Tax=Gemmatirosa kalamazoonesis TaxID=861299 RepID=W0RJJ5_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 9.310e-22
Identity = 70/147 (47.62%), Postives = 85/147 (57.82%), Query Frame = 1
Query:    1 AVLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKELDSKI--RESDPEYEG-MDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRDDLDALIERADEIIDQDGYALRL 432
            A L  MV  GRG V+NV S  G     +ASAY TSK AL RL++ AA      GV VF I PG V T MT+EL S    R   P Y    DE      +DAA+L +RLAAGDAD L+GR++   DDLDAL+  A+ I  ++   LRL
Sbjct:  125 AALSRMVPRGRGRVVNVSSRAGNAAIPFASAYVTSKTALTRLTEVAAAEARPYGVFVFAIEPGTVRTAMTEELMSSDAGRAWLPWYRATFDEGRDASPDDAARLVVRLAAGDADPLAGRLVSRADDLDALVADAERIAREERLVLRL 271          
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: B5JNB0_9BACT (Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=Verrucomicrobiae bacterium DG1235 TaxID=382464 RepID=B5JNB0_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 1.070e-21
Identity = 61/144 (42.36%), Postives = 80/144 (55.56%), Query Frame = 1
Query:    1 AVLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKELDSKIRESDPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRDDLDALIERADEIIDQDGYALRL 432
            AVL  M+    G +IN+GSY  + P      Y+ SKAAL+RLSD  A S    G+SVFT+SPG V TDMT+++    ++  PE      AW    +D  KL   L++G    LSGR IHV DDL  L +  D I  ++ Y L L
Sbjct:  138 AVLDSMIARQSGTIINMGSYASIRPIEGNPGYAASKAALVRLSDSLAVSTKPHGISVFTVSPGLVLTDMTRDVPI-FKDLPPE------AWSS-IDDICKLVANLSSGSYSALSGRFIHVNDDLQQLAQNLDRIKSENLYTLHL 273          
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: A0A641ARS4_9ACTN (SDR family oxidoreductase n=1 Tax=Aeromicrobium fastidiosum TaxID=52699 RepID=A0A641ARS4_9ACTN)

HSP 1 Score: 97.4 bits (241), Expect = 1.270e-21
Identity = 60/151 (39.74%), Postives = 84/151 (55.63%), Query Frame = 1
Query:    1 AVLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKELDSKIRES----DPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRDDLDALIERADEIIDQDGYALRLTMA 441
            AVL  MV  G GC++NVGSY G  P  + SAYS +KAA+  +++  A  + + GV+ FT+ P  V T  T  LDS   +      PE   + E    PA       +RL  G AD +SGR++ V  DL+A+ ER++EI   + Y LR+T A
Sbjct:  130 AVLPSMVERGSGCIVNVGSYFGYQPKAYRSAYSAAKAAVHTMTEVLATEVAEHGVTAFTLDPAMVKT--TLLLDSAASDQAARWTPEATDLPEDGYTPAAAVGDFVVRLVLGAADGMSGRVVRVHSDLEAMDERSEEIRRDEHYVLRMTKA 278          
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: A0A538HGM9_9ACTN (SDR family oxidoreductase n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538HGM9_9ACTN)

HSP 1 Score: 94.4 bits (233), Expect = 1.240e-20
Identity = 61/145 (42.07%), Postives = 82/145 (56.55%), Query Frame = 1
Query:    1 AVLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKEL--DSKIRESDPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRDDLDALIERADEIIDQDGYALR 429
            AVL  MV  G G ++ + SY    P  W+S Y + +AAL+R  D  A  +++ GV+VF +SPGFV T++ + +      R   PE     +A     E A +L   LA G AD L+GR +HV DDLD L+ RADEI   D YALR
Sbjct:  121 AVLPGMVERGAGRIVVLSSYAANVPRPWSSGYGSGRAALLRFIDSLAGEVEERGVAVFAVSPGFVRTELVENVIRSEAGRRYLPELGERTDA--LAPELAGELVAELATGRADALTGRFLHVLDDLDDLVARADEIRANDLYALR 263          
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Match: A0A538DBS8_9ACTN (SDR family oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538DBS8_9ACTN)

HSP 1 Score: 93.6 bits (231), Expect = 2.400e-20
Identity = 60/144 (41.67%), Postives = 81/144 (56.25%), Query Frame = 1
Query:    4 VLQDMVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGVSVFTISPGFVWTDMTKELDSKI--RESDPEYEGMDEAWIFPAEDAAKLCLRLAAGDADRLSGRMIHVRDDLDALIERADEIIDQDGYALR 429
            VL  M+  G G ++ V SY   +P  ++S Y++ KAAL+R  D  A  + D GV VF ++PGFV T +  E+      R   PE     +A     E   +L + LA+G AD LSGR +HV DDLD LI RA++I   D YALR
Sbjct:  122 VLPGMIAGGSGRIVAVSSYAANDPRPYSSGYASGKAALLRFVDSVAAEVADHGVYVFAVTPGFVRTRLVDEVAQSTAGRRWLPELAERQDA--LEPERVGRLVVELASGRADALSGRFLHVLDDLDDLIARAEQISRDDRYALR 263          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70227.18073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5B0WXY5_9GAMM1.420e-4657.64SDR family oxidoreductase n=1 Tax=Pseudohalioglobu... [more]
A0A1Q9NBW7_9ARCH1.870e-2644.443-oxoacyl-[acyl-carrier-protein] reductase FabG n=... [more]
A0A2W6DLA1_9PSEU2.260e-2346.36NAD(P)-dependent oxidoreductase n=1 Tax=Pseudonoca... [more]
A0A6B2LZV0_9BACT1.570e-2246.53SDR family oxidoreductase n=1 Tax=Oceanipulchritud... [more]
A0A3D4WUN6_9ACTN2.090e-2242.95Uncharacterized protein n=1 Tax=Micromonosporaceae... [more]
W0RJJ5_9BACT9.310e-2247.62Short-chain dehydrogenase/reductase SDR n=1 Tax=Ge... [more]
B5JNB0_9BACT1.070e-2142.36Oxidoreductase, short chain dehydrogenase/reductas... [more]
A0A641ARS4_9ACTN1.270e-2139.74SDR family oxidoreductase n=1 Tax=Aeromicrobium fa... [more]
A0A538HGM9_9ACTN1.240e-2042.07SDR family oxidoreductase n=2 Tax=Actinomycetia ba... [more]
A0A538DBS8_9ACTN2.400e-2041.67SDR family oxidoreductase n=1 Tax=Actinomycetia ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70227contigEcto-sp13_S_contig70227:2..457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score89.0
Seed ortholog evalue2e-15
Seed eggNOG ortholog1122963.AUHB01000006_gene2514
Model size456
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.KR domain
EggNOG OGs1N4Z9@1224,2UE0R@28211,COG1028@1,COG1028@2
Cds size441
COG Functional cat.IQ
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.7147877-UTR-Ecto-sp13_S_contig70227:1..161681463963.7147877-UTR-Ecto-sp13_S_contig70227:1..16Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig70227 2..16 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.730878-CDS-Ecto-sp13_S_contig70227:16..4571681463963.730878-CDS-Ecto-sp13_S_contig70227:16..457Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70227 17..457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70227.18073.1prot_Ecto-sp13_S_contig70227.18073.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70227 17..457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70227.18073.1

>prot_Ecto-sp13_S_contig70227.18073.1 ID=prot_Ecto-sp13_S_contig70227.18073.1|Name=mRNA_Ecto-sp13_S_contig70227.18073.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
MVTAGRGCVINVGSYVGVNPTGWASAYSTSKAALMRLSDCAADSLDDSGV
SVFTISPGFVWTDMTKELDSKIRESDPEYEGMDEAWIFPAEDAAKLCLRL
AAGDADRLSGRMIHVRDDLDALIERADEIIDQDGYALRLTMALDDL*
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mRNA from alignment at Ecto-sp13_S_contig70227:2..457+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70227.18073.1 ID=mRNA_Ecto-sp13_S_contig70227.18073.1|Name=mRNA_Ecto-sp13_S_contig70227.18073.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70227:2..457+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGTGCTGCAAGATATGGTGACTGCGGGTCGCGGTTGCGTCATTAATGT GGGGTCCTATGTCGGTGTTAACCCCACAGGATGGGCTTCTGCGTATTCAA CATCCAAGGCCGCACTCATGCGTTTGTCGGACTGTGCGGCAGACAGTCTC GACGATTCAGGAGTTTCTGTTTTCACCATCAGTCCGGGGTTTGTTTGGAC GGACATGACCAAGGAGCTGGACTCAAAAATTCGAGAGTCTGATCCTGAAT ACGAAGGCATGGATGAAGCCTGGATTTTTCCCGCAGAAGATGCCGCAAAA CTATGCCTTCGTCTCGCCGCAGGAGACGCCGACCGGCTGAGCGGCCGCAT GATTCACGTGCGCGATGATCTGGACGCGCTCATTGAACGCGCCGATGAGA TCATCGACCAAGACGGTTACGCGCTGCGACTTACTATGGCATTGGATGAC CTATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70227:2..457+

>mRNA_Ecto-sp13_S_contig70227.18073.1 ID=mRNA_Ecto-sp13_S_contig70227.18073.1|Name=mRNA_Ecto-sp13_S_contig70227.18073.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70227:2..457+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGACTGCGGGTCGCGGTTGCGTCATTAATGTGGGGTCCTATGTCGG
TGTTAACCCCACAGGATGGGCTTCTGCGTATTCAACATCCAAGGCCGCAC
TCATGCGTTTGTCGGACTGTGCGGCAGACAGTCTCGACGATTCAGGAGTT
TCTGTTTTCACCATCAGTCCGGGGTTTGTTTGGACGGACATGACCAAGGA
GCTGGACTCAAAAATTCGAGAGTCTGATCCTGAATACGAAGGCATGGATG
AAGCCTGGATTTTTCCCGCAGAAGATGCCGCAAAACTATGCCTTCGTCTC
GCCGCAGGAGACGCCGACCGGCTGAGCGGCCGCATGATTCACGTGCGCGA
TGATCTGGACGCGCTCATTGAACGCGCCGATGAGATCATCGACCAAGACG
GTTACGCGCTGCGACTTACTATGGCATTGGATGACCTATAG
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