mRNA_Ecto-sp13_S_contig70214.18070.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig70214.18070.1
Unique NamemRNA_Ecto-sp13_S_contig70214.18070.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig70214.18070.1 vs. uniprot
Match: A0A6H5L6G0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6G0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.120e-15
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 DAMTVIGTDGRGEPKLAGETAVCGKWKGAFAMRLKQS 111
            DAMTVIGTDGRGEPKLAGETAVCGKWKGAFAMRL++S
Sbjct:  225 DAMTVIGTDGRGEPKLAGETAVCGKWKGAFAMRLQRS 261
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig70214.18070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6G0_9PHAE2.120e-1594.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig70214contigEcto-sp13_S_contig70214:567..677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score73.9
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog2880.D8LT31
Model size111
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2BI3D@1,2S1DD@2759
Cds size105
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.5485804-UTR-Ecto-sp13_S_contig70214:566..5721681463963.5485804-UTR-Ecto-sp13_S_contig70214:566..572Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig70214 567..572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.5636103-CDS-Ecto-sp13_S_contig70214:572..6771681463963.5636103-CDS-Ecto-sp13_S_contig70214:572..677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig70214 573..677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig70214.18070.1prot_Ecto-sp13_S_contig70214.18070.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig70214 573..677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig70214.18070.1

>prot_Ecto-sp13_S_contig70214.18070.1 ID=prot_Ecto-sp13_S_contig70214.18070.1|Name=mRNA_Ecto-sp13_S_contig70214.18070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
MTVIGTDGRGEPKLAGETAVCGKWKGAFAMRLKQS
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mRNA from alignment at Ecto-sp13_S_contig70214:567..677+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig70214.18070.1 ID=mRNA_Ecto-sp13_S_contig70214.18070.1|Name=mRNA_Ecto-sp13_S_contig70214.18070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70214:567..677+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGCGATGACAGTCATCGGCACAGACGGGCGTGGGGAGCCCAAGCTGGC
CGGCGAGACCGCGGTGTGCGGAAAGTGGAAAGGGGCTTTCGCCATGCGGC
TGAAGCAATCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig70214:567..677+

>mRNA_Ecto-sp13_S_contig70214.18070.1 ID=mRNA_Ecto-sp13_S_contig70214.18070.1|Name=mRNA_Ecto-sp13_S_contig70214.18070.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig70214:567..677+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGTCATCGGCACAGACGGGCGTGGGGAGCCCAAGCTGGCCGGCGA
GACCGCGGTGTGCGGAAAGTGGAAAGGGGCTTTCGCCATGCGGCTGAAGC
AATCG
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