mRNA_Ecto-sp13_S_contig7009.18058.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7009.18058.1
Unique NamemRNA_Ecto-sp13_S_contig7009.18058.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: A0A6H5K1R5_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R5_9PHAE)

HSP 1 Score: 426 bits (1095), Expect = 7.630e-147
Identity = 222/241 (92.12%), Postives = 226/241 (93.78%), Query Frame = 1
Query:   28 TMDTDKLRETMERAEARNPIIWASLFSRNLLPGVVNIHRSTHELLDRILEGQAAPDLDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSSGRPLIDGAVGDVAGVDGLERFERVLYHHATYLPLRLTQHLGGFTDLVALKINGLPYLNPWQLPGNGMDAFRRAKEATLRALDTPVK----TGSVAATKADDGTSGLPEAVHRGVRVVKVRAQCGQMVNSRGVVRSRL 738
            TM+TDKL+E MERAEARNPIIWASLFSRNLLPGVVNIHRST ELLDR LEGQAAPDLDKSALPVLVSAFD TRLKTKVFSEGKAADALAASMAVP LFKPVWS+GRPLIDGAVGDVAGVDGLER ERVLYHHATYLPLRLTQHLGGFTDLVALKINGLPYLNPWQLPGNGMDAFR AKEATLRALDTPVK    TGSVAATKADDGTSGLPEAVH GVRVVKVRAQ  QMV+S GVVRSRL
Sbjct:   62 TMNTDKLQEAMERAEARNPIIWASLFSRNLLPGVVNIHRSTRELLDRTLEGQAAPDLDKSALPVLVSAFDATRLKTKVFSEGKAADALAASMAVPGLFKPVWSNGRPLIDGAVGDVAGVDGLERSERVLYHHATYLPLRLTQHLGGFTDLVALKINGLPYLNPWQLPGNGMDAFRLAKEATLRALDTPVKKRGWTGSVAATKADDGTSGLPEAVHPGVRVVKVRAQRRQMVDSGGVVRSRL 302          
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: D8LD55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD55_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.460e-28
Identity = 63/71 (88.73%), Postives = 64/71 (90.14%), Query Frame = 1
Query:  538 MDAFRRAKEATLRALDTPVK----TGSVAATKADDGTSGLPEAVHRGVRVVKVRAQCGQMVNSRGVVRSRL 738
            MDAFR AKEATLRALDTPVK    TGS AATKADDGTSGLPEAVHRGVRVVKVRAQ GQMV+SRGVVRSRL
Sbjct:    1 MDAFRLAKEATLRALDTPVKKRGWTGSAAATKADDGTSGLPEAVHRGVRVVKVRAQRGQMVDSRGVVRSRL 71          
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: A0A7S3XKZ4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKZ4_HETAK)

HSP 1 Score: 114 bits (286), Expect = 1.790e-25
Identity = 62/169 (36.69%), Postives = 96/169 (56.80%), Query Frame = 1
Query:   76 RNPIIWASLFSRNLLPGVVNIHRSTHELLDRILEGQAAPDLDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSSGRPLIDGAVGDVAGVDGLERFERVLYHHATYLPLRLTQHLGGFTDLVALKINGLPYLNPWQLPGNGMDAFRRAKEATLRAL 582
            R  I+       N  PG+ N+++++  ++   L   +    ++  LP  +SAFD   L+T+ F  G    A+AASM+VP +FKP + +G+P +DGA+ DVAG+ G+++ ERVLYHH T LP+  +  +  F +   LKI GLP+L+P      G +    A  AT  AL
Sbjct:   87 REEILQLGTLMGNPWPGLFNVYKASQSVIRDFLPVHS---FEQCRLPAAISAFDIYNLRTQAFFSGDIVTAVAASMSVPFMFKPTFINGKPFLDGALFDVAGLAGVDKDERVLYHHCTALPVSCSG-IDAFRNSTTLKIEGLPFLDPATYSRRGAETIELAYVATKDAL 251          
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: A0A813I6K8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I6K8_POLGL)

HSP 1 Score: 100 bits (250), Expect = 1.840e-20
Identity = 58/154 (37.66%), Postives = 87/154 (56.49%), Query Frame = 1
Query:  124 GVVNIHRSTHELLDRILEGQAAPDLDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSS-GRPLIDGAVGDVAGVDGLERFERVLYHHATYLPLRLTQHLGGFTDLVALKINGLPYLNPWQLPGNGMDAFRRAKEATLRAL 582
            G+ +       L  R+ + +    L+  A+PV +S FD    +T+V  EG  A A+ AS+AVP  F PV+   GRPL+DG + D+ G++G+   ERVLYHHA+ +P   T  +G + + + L+I  LP++NP+ L G    A   AK AT   L
Sbjct:  124 GIFSTEHVQRCLQSRLEKYRLCQRLEDCAVPVAISTFDVFSRQTRVLREGSIAFAITASLAVPFFFAPVYFEVGRPLLDGGIRDLPGLEGVSFGERVLYHHASIVPSCFTA-IGRYPESITLRIPHLPFVNPFTL-GQAQPALTTAKLATQAGL 275          
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: A0A7S3M828_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M828_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.600e-6
Identity = 46/176 (26.14%), Postives = 82/176 (46.59%), Query Frame = 1
Query:  154 ELLDRILEGQAAPD-LDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSSGRPLIDGAVGDVAGVD------GLERFERV----------------------LYHHATY----LPLRLTQHLGGFTDLVALKINGLPYLNPWQLPGNGMDAFRRAKEATLRAL 582
            EL ++++E       +++   P+ V+ +D  R KT   +EGK A A+ AS   P +F+PV   G P IDG V D  G+       GL + + V                      ++  ++     LP +L  H      L+ + +  +P ++P+ +   G++A++ A+ ATL+AL
Sbjct:  132 ELFEQLIERNLPVQRIEECKYPLAVTTYDLMRFKTLHLTEGKLAQAMRASCTFPGMFQPVMIEGSPNIDGGVFDNVGLMALPHALGLHKSQSVNDCTECQESASDKTRMQLVVNIVFGRSSVASSVLPPQLKNH-----KLLTVVVENIPSVHPFSMDTMGVEAYKAARAATLKAL 302          
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: N0B9T0_9HYPH (Patatin n=1 Tax=Hyphomicrobium denitrificans 1NES1 TaxID=670307 RepID=N0B9T0_9HYPH)

HSP 1 Score: 58.2 bits (139), Expect = 8.530e-6
Identity = 47/146 (32.19%), Postives = 68/146 (46.58%), Query Frame = 1
Query:   85 IIWASLFSRNLLPGVVNIHRSTHE---LLDRILEGQAAPDLDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSSGRPLIDGAVGDVAGVDGLERFERVLYHHATYLPLRLTQHLGGFTDLVALKINGLPYLN 513
            I  A  FSR  L GVV    +  +   +LD IL      DL    +P+ + A D    + KVF+EG    A+AASMA+P++F+PV   GR LIDG + +                     PL     +G    +VA+ ++G+P  N
Sbjct:   99 IATAQPFSR--LVGVVGRRNAILDPITVLDVILPKSVKSDLAACEIPIKIVASDFYYQEPKVFTEGPLRTAVAASMALPVIFQPVMDGGRALIDGGLTN---------------------PLPFDLVMGEADIVVAIDVSGVPVPN 221          
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: UPI001D0AB3CC (patatin-like phospholipase family protein n=1 Tax=Mesorhizobium sp. PAMC28654 TaxID=2880934 RepID=UPI001D0AB3CC)

HSP 1 Score: 57.4 bits (137), Expect = 1.200e-5
Identity = 45/112 (40.18%), Postives = 60/112 (53.57%), Query Frame = 1
Query:   52 ETMERAEARN---PIIWASLFS----RNLLPGVVNIHRSTHELLDRILEGQAAPDLDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSSGRPLIDGAV 366
            ET+ R   RN   P+ W SL      R+ L G   I      L++R L  +   +L+ + +P+ V A D    +  V SEG AADA+AAS A+P+ F PV   GR LIDGAV
Sbjct:   66 ETLWRGITRNDVFPVSWLSLLGFARRRDFLSGSHGIRN----LVERHLPYR---NLEDAPIPIHVIATDLLSGEAVVLSEGNAADAIAASSAIPVAFAPVRIGGRFLIDGAV 170          
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: A0A120CWG0_HYPSL (Serine protease n=2 Tax=Hyphomicrobium sulfonivorans TaxID=121290 RepID=A0A120CWG0_HYPSL)

HSP 1 Score: 57.4 bits (137), Expect = 1.430e-5
Identity = 44/125 (35.20%), Postives = 59/125 (47.20%), Query Frame = 1
Query:  145 STHELLDRILEGQAAPDLDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSSGRPLIDGAVGDVAGVDGLERFERVLYHHATYLPLRLTQHLGGFTDL-VALKINGLPYLNP 516
            S  +LLD IL  Q A D D    P+ + A D    +  VFS G    A+AASMA+P++F+PV   GR LIDG +                      LP  L   + G  DL VA+ ++G P  +P
Sbjct:  117 SPEKLLDTILPPQFARDFDHLTTPLKIVASDFYAQEAVVFSSGPLRRAVAASMALPIIFQPVEVEGRVLIDGGL-------------------VNPLPFDL---IAGDADLTVAVDVSGAPTRSP 219          
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: A0A6I0EC98_HYPSQ (Patatin-like phospholipase family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EC98_HYPSQ)

HSP 1 Score: 56.2 bits (134), Expect = 3.550e-5
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 1
Query:  154 ELLDRILEGQAAPDLDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSSGRPLIDGAV 366
            +LLD IL  + A D D  A P+ V A D    ++ VF+ G    A+AASMA+P++F+PV   GR LIDG +
Sbjct:  120 KLLDIILPARIARDFDHLATPLKVVASDFYAQESVVFASGPLRPAIAASMALPVIFQPVVIEGRVLIDGGL 190          
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: UPI0003796C1D (patatin-like phospholipase family protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI0003796C1D)

HSP 1 Score: 55.8 bits (133), Expect = 4.900e-5
Identity = 38/131 (29.01%), Postives = 60/131 (45.80%), Query Frame = 1
Query:  157 LLDRILEGQAAPDLDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSSGRPLIDGAVGDVAGVDGLERFERVLYHHATYLPLRLTQHLGGFTDLVALKINGLPYLNPWQLPGNGMDAF 549
            LLD +         D+ A+P+ + A D   L+  VFS G    A+AASMA+P++F+PV  SGR  +DG + +                     PL      G    +VA+ ++G P  +P +L    ++A 
Sbjct:  125 LLDLVFPEGVPRSFDELAIPLHIVASDFYALEPAVFSSGPLRPAVAASMALPVIFEPVLMSGRSYVDGGLTN---------------------PLPFDLMAGQVDVVVAIDVSGSPVPSPSRLRPTAIEAL 234          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5K1R5_9PHAE7.630e-14792.12PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LD55_ECTSI1.460e-2888.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XKZ4_HETAK1.790e-2536.69Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A813I6K8_POLGL1.840e-2037.66Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S3M828_9STRA4.600e-626.14Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
N0B9T0_9HYPH8.530e-632.19Patatin n=1 Tax=Hyphomicrobium denitrificans 1NES1... [more]
UPI001D0AB3CC1.200e-540.18patatin-like phospholipase family protein n=1 Tax=... [more]
A0A120CWG0_HYPSL1.430e-535.20Serine protease n=2 Tax=Hyphomicrobium sulfonivora... [more]
A0A6I0EC98_HYPSQ3.550e-545.07Patatin-like phospholipase family protein n=1 Tax=... [more]
UPI0003796C1D4.900e-529.01patatin-like phospholipase family protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7009contigEcto-sp13_S_contig7009:2442..6431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score90.1
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog502025.Hoch_1647
Model size1109
KEGG koko:K07001
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.Patatin-like phospholipase
EggNOG OGs1RCDG@1224,2X4CS@28221,2YYRY@29,43963@68525,COG1752@1,COG1752@2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_000510.1
Cds size711
COG Functional cat.S
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7009.18058.1prot_Ecto-sp13_S_contig7009.18058.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7009 2810..5810 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463962.2348468-UTR-Ecto-sp13_S_contig7009:2441..28091681463962.2348468-UTR-Ecto-sp13_S_contig7009:2441..2809Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7009 2442..2809 -
1681463962.3104062-UTR-Ecto-sp13_S_contig7009:5810..58131681463962.3104062-UTR-Ecto-sp13_S_contig7009:5810..5813Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7009 5811..5813 -
1681463962.3224297-UTR-Ecto-sp13_S_contig7009:6404..64311681463962.3224297-UTR-Ecto-sp13_S_contig7009:6404..6431Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7009 6405..6431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463962.258819-CDS-Ecto-sp13_S_contig7009:2809..30541681463962.258819-CDS-Ecto-sp13_S_contig7009:2809..3054Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7009 2810..3054 -
1681463962.2721143-CDS-Ecto-sp13_S_contig7009:3423..34961681463962.2721143-CDS-Ecto-sp13_S_contig7009:3423..3496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7009 3424..3496 -
1681463962.2816126-CDS-Ecto-sp13_S_contig7009:4268..44461681463962.2816126-CDS-Ecto-sp13_S_contig7009:4268..4446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7009 4269..4446 -
1681463962.2909708-CDS-Ecto-sp13_S_contig7009:4946..51141681463962.2909708-CDS-Ecto-sp13_S_contig7009:4946..5114Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7009 4947..5114 -
1681463962.3004332-CDS-Ecto-sp13_S_contig7009:5763..58101681463962.3004332-CDS-Ecto-sp13_S_contig7009:5763..5810Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7009 5764..5810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7009.18058.1

>prot_Ecto-sp13_S_contig7009.18058.1 ID=prot_Ecto-sp13_S_contig7009.18058.1|Name=mRNA_Ecto-sp13_S_contig7009.18058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=237bp
MDTDKLRETMERAEARNPIIWASLFSRNLLPGVVNIHRSTHELLDRILEG
QAAPDLDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPV
WSSGRPLIDGAVGDVAGVDGLERFERVLYHHATYLPLRLTQHLGGFTDLV
ALKINGLPYLNPWQLPGNGMDAFRRAKEATLRALDTPVKTGSVAATKADD
GTSGLPEAVHRGVRVVKVRAQCGQMVNSRGVVRSRL*
back to top

mRNA from alignment at Ecto-sp13_S_contig7009:2442..6431-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7009.18058.1 ID=mRNA_Ecto-sp13_S_contig7009.18058.1|Name=mRNA_Ecto-sp13_S_contig7009.18058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3990bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7009:2442..6431- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGTCGTGCATATGACCGTGAAAATGTGAGGTGAACGCGAAAATACGG GGTTTTGTGAGATCGGTTTTTGAAGATCAATTTCTCCGCAACGAAAAGGG TGCGAAACACCACCGGATAAGTCCAAGGACATTCAGGTATACTAGCTAGG TGTCGACGAGATATGTTTCCAGAACCGCCCCCACCATCTTCGGCATTTGC GGCATTGGTTGTTGAGCAATCGAGCTGAAAACATATCGATCGCACACCTG CTGTGCGTTCGCCCGCACTTTTATGGTATTGGCTGGGAACGAGATCGCGC GTGGTTTCCTTGTTGGACTCAGCGGCATGCTGCTTGCTGAATGGCATGGA AGCCGGTCTCGAGAGCGAAGGCTGCAAGTCGTGGCGGCGTCCCGCGTTCG TTATCATGTATGTATCGAAAGTTGCGATTCGCGAAGGCCTCATCATCCCG CTCCCCATTGTCGAGGTTGTTTTTCCCCGGATCTTGATCCTTACGCTGAT GAAGATCCTTGTCCTGAGGATGATCCTCGTCCTGATGACTATCCTCGTCT TCATGACGATCCTTGTCCTGGCGATGATCCTTGTCCCTGTCGTGATGATG TCGGATGATGGAGCGTAGACGATGGACACGGACAAGCTGCGAGAGACGAT GGAGAGAGCCGAGGCCAGGTGCGTATCTTGCCCTCCCACCTCCGTTTTCG GCTCGTGCGGTTGAAAACTTAGTAGGCTTGAGTGACAGCCACCACTCATC GGTTCAAAATTAACTCGTGTACATAACTACGGGGCATTCGAGAAGCCCTA CATGCTAGCCTGCTTCGGGATATCTTTCCATGTTTCTGAAAGAGGCGGCT TCGTATTGTGTTGGCTGGCTTTGTGTGGATCTTGACTGGTCCACCTCATC TGCTATTAGGCCAGCCTATAACTGCGAGGAAAAATGTCGCCTTTTGTAGG GGAGGGGGGCGTACTGTCTCATGGCAGCCGACAACATGGGCCACGGGTCA ACACCGGTCGGTTTCGTGCGTGCGGGAGAACTATCTGGCGGACCGCCACG ATCAATTTCCTTTGCACGGAGATAATAGTATTTTTTTCGTGGACTTGCAG GTGGAGAGCCGATGCCCCGACACCGAACTACAATTTTATGTCGTTTGAAG TTTAGATTTCTCTCGTGGGAAGTAGTTCGTGGTAAAATGTTAGTACGTCC AGTACTAGTCGAAGAGCGTACGAACCAGGTTGACTCCCTGTCCCACTTTC CGGCGCTCGCTCTCTCTCCGCGCGGGCACTCGCGGATTGGCACCTGCGCT TGTATCTGCATATGCAGGAACCCCATAATCTGGGCGTCTCTTTTTTCTCG GAACCTTCTACCGGGCGTAGTGAACATTCACAGATCAACCCATGAGCTGC TCGATCGCATCCTGGAAGGGCAAGCCGCGCCCGATTTGGACAAGAGCGCC TTGCCCGTCCTTGTTTCTGCCTTCGACACCACCAGGTGTGTGTGTGTGTG TGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGGCGGTCGTTGGTGTTGTTTGATTGGGCCGCTCGTGAAGGA ACTATATTAATCATTCGTAGCACTTCCCTTGAGCTACGCAGCCTCTCTCC TGCATCGTGTAAGGCCCAGCCCTAGAGGTTCGAAGAATCGAACTAAAGAT AAGAATCGGGCCTTGAATGGTCGCAGACATACGAAGCCTTTCTCGTTTCC CGGCTGACAGAGCTCAAGCTTGATTTTCTGAAGCGGACAAAAAGTTAAAT TTTTGCCGTGAAGTGTTTCTTCCGAAGTCAGGAAAACAAAATTCAAAACC GAGTATGTTAGTTGTTCCCGGCCAATGAATGCAATTTCGATTTTGACTTT TGCGACTTTGTGTCCCAAAACGTCCTTCATGCCCGGTGTAAGCCGTGACC AAGTTTCCTTCCGTTCTCTTCTGACCGAATCGAAGGCTCAAAACGAAGGT GTTCTCGGAGGGCAAGGCTGCTGACGCGCTAGCTGCTTCCATGGCTGTCC CACTGCTTTTCAAGCCGGTCTGGTCGAGCGGGAGGCCGCTGATCGACGGG GCGGTCGGGGACGTTGCCGGAGTCGACGGGCTGGAGCGATTTGAGAGGGT GCTTTATCACCACGTGAGCTGCCACGCCGCCGCCGTAGGCCAGGTTTTCT CGAAGCACAACTTGCCTCTTCACCTCTTTAAAACCGATTGTAATGCTAGG CTCCAGTGGCCTACGGGGCACGGCAACGACGCACCTGCCATGTAAAGAGG CGGTGCCCCCCCCCTCATCATCCCCCCTCGCGGGGCCGTAGGTCATGACC GTTAGGCACGGTTTTCGCTTTTGGCTGCACTGAGACTGACGTCTGTTCAT CGATCAGCCGGTAAGGCGCAGCCGATGGTTCCAAAGAAATACACACGAAG ATGAGGGTGGTAGATCCACCCCTGCCCCCGACCGTCTCGGTCTGTCATCT CTCACCCTTCCCCTTCGGGAGGCAACAATGGTGACCCTTTCGAGGAACCG GTGTGTCTTCACGCCTACTTCGTGTGGCACATTACACGAGGGCGCGTTGA TGCGACATGATTTCGTCGAGACATGGGTTGAGTGTTGTTCGTTCCCGGCA TATGGTCGTGTAATTGATGTGGGGGTTACATCGAGAATGGGATCGAAGCT TCGTTCGAGTCGGCGTATTTTTTCGTCGGAGAAACCTAAACACTTGTACT TCTTCGGCGCCCTAGCCGGAAACTTGTGGGGAAACTCCTCTCGTCGGCGA TAAGACTACTGCTGCAGCTTGGCGCTCCCTTCAGAAACTTGGTAAACTTG ACGGACAAGCTCACCCAGCTGTATGCCTACTTAATCGTATCTCCCTCCGG GCTGCGCGGTCGACATCATCCACTCGTTCCCACAGGCCACCTACCTCCCG CTACGGTTAACACAGCATCTGGGAGGTTTTACAGACCTCGTCGCGCTAAA GATAAACGGTGCGTTTCTACTGTGTGTGTTTGGGTCTGTTCGTAGTACCT GTAGATATTCGTTCGGTCAGGACGTGTTTACGTACGAGGAAGAAAAGTAA CCAACCTTCGTAAGACTCGGTAGGGGAGGAAAGCTTTTCTTCTCCCACTT TGCCATAGCGTGCTGAACACGCAACACTTCTTTGTGCTTCTGTACGACTA GGGCCTGCCTGGTTGCACCTCGCTGGGGATCATACGTTTGCACAGGCAGC AGGAGATACTGTCGGAAAAAGATGCGTTTGAAAGAATAATAGCGGAGTGT GCGAGCACGCTGAGCCCATTTACCTGCATTCGCCGATTCTGATTGGCTGA TCTCCTTCTGTGCGTGGCACGCCGCAGGACTGCCATATCTCAACCCTTGG CAGCTGCCGGGAAACGGCATGGACGCCTTTCGACGGGCAAAAGAAGCGAC TTTGAGGGCGTTGGATACCCCGGTGAAGACAGGGAGCGTAGCAGCAACCA AGGCCGATGATGGCACAAGCGGTTTGCCCGAGGCTGTACACCGGGGGGTT CGAGTGGTGAAAGTGCGGGCGCAATGTGGCCAGATGGTTAATTCTAGAGG GGTGGTGCGGAGCAGGCTATGAGGCATGCACACGTGTTGGGGGATTGCGT CAAGAATGGGTGGGTGGCGTGTTTTCAAGGGTGTTCCCCTGTGTGGCATC GAGATGAGTTGTAAGGGCAATGCTTGGGGTTGATTGTGTCCGGACTCGGC AGTGTCCAAACGCCGAAGGCCATAGGTACTACACTCCGTCTGTAGTGAGG TTGCAAGCTATTTGTCCGCATGCCCGTCACCCCGTGCAGACTTCCAAACA GCTTGGGGGATTGATGATAGGGGGACCAGAGCCCACCTATGACCTTCAGT GATGTCACTGCCCTATCTGCCACAAAATAGACGTTTGAAATTATCAATAT CTGCAGGTACCAGAGTCAGCGAAAAAAACGACACCCCGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7009:2442..6431-

>mRNA_Ecto-sp13_S_contig7009.18058.1 ID=mRNA_Ecto-sp13_S_contig7009.18058.1|Name=mRNA_Ecto-sp13_S_contig7009.18058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=711bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7009:2442..6431- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACACGGACAAGCTGCGAGAGACGATGGAGAGAGCCGAGGCCAGGAA
CCCCATAATCTGGGCGTCTCTTTTTTCTCGGAACCTTCTACCGGGCGTAG
TGAACATTCACAGATCAACCCATGAGCTGCTCGATCGCATCCTGGAAGGG
CAAGCCGCGCCCGATTTGGACAAGAGCGCCTTGCCCGTCCTTGTTTCTGC
CTTCGACACCACCAGGCTCAAAACGAAGGTGTTCTCGGAGGGCAAGGCTG
CTGACGCGCTAGCTGCTTCCATGGCTGTCCCACTGCTTTTCAAGCCGGTC
TGGTCGAGCGGGAGGCCGCTGATCGACGGGGCGGTCGGGGACGTTGCCGG
AGTCGACGGGCTGGAGCGATTTGAGAGGGTGCTTTATCACCACGCCACCT
ACCTCCCGCTACGGTTAACACAGCATCTGGGAGGTTTTACAGACCTCGTC
GCGCTAAAGATAAACGGACTGCCATATCTCAACCCTTGGCAGCTGCCGGG
AAACGGCATGGACGCCTTTCGACGGGCAAAAGAAGCGACTTTGAGGGCGT
TGGATACCCCGGTGAAGACAGGGAGCGTAGCAGCAACCAAGGCCGATGAT
GGCACAAGCGGTTTGCCCGAGGCTGTACACCGGGGGGTTCGAGTGGTGAA
AGTGCGGGCGCAATGTGGCCAGATGGTTAATTCTAGAGGGGTGGTGCGGA
GCAGGCTATGA
back to top