mRNA_Ecto-sp13_S_contig7009.18058.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: A0A6H5K1R5_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R5_9PHAE) HSP 1 Score: 426 bits (1095), Expect = 7.630e-147 Identity = 222/241 (92.12%), Postives = 226/241 (93.78%), Query Frame = 1
Query: 28 TMDTDKLRETMERAEARNPIIWASLFSRNLLPGVVNIHRSTHELLDRILEGQAAPDLDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSSGRPLIDGAVGDVAGVDGLERFERVLYHHATYLPLRLTQHLGGFTDLVALKINGLPYLNPWQLPGNGMDAFRRAKEATLRALDTPVK----TGSVAATKADDGTSGLPEAVHRGVRVVKVRAQCGQMVNSRGVVRSRL 738
TM+TDKL+E MERAEARNPIIWASLFSRNLLPGVVNIHRST ELLDR LEGQAAPDLDKSALPVLVSAFD TRLKTKVFSEGKAADALAASMAVP LFKPVWS+GRPLIDGAVGDVAGVDGLER ERVLYHHATYLPLRLTQHLGGFTDLVALKINGLPYLNPWQLPGNGMDAFR AKEATLRALDTPVK TGSVAATKADDGTSGLPEAVH GVRVVKVRAQ QMV+S GVVRSRL
Sbjct: 62 TMNTDKLQEAMERAEARNPIIWASLFSRNLLPGVVNIHRSTRELLDRTLEGQAAPDLDKSALPVLVSAFDATRLKTKVFSEGKAADALAASMAVPGLFKPVWSNGRPLIDGAVGDVAGVDGLERSERVLYHHATYLPLRLTQHLGGFTDLVALKINGLPYLNPWQLPGNGMDAFRLAKEATLRALDTPVKKRGWTGSVAATKADDGTSGLPEAVHPGVRVVKVRAQRRQMVDSGGVVRSRL 302
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: D8LD55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD55_ECTSI) HSP 1 Score: 115 bits (288), Expect = 1.460e-28 Identity = 63/71 (88.73%), Postives = 64/71 (90.14%), Query Frame = 1
Query: 538 MDAFRRAKEATLRALDTPVK----TGSVAATKADDGTSGLPEAVHRGVRVVKVRAQCGQMVNSRGVVRSRL 738
MDAFR AKEATLRALDTPVK TGS AATKADDGTSGLPEAVHRGVRVVKVRAQ GQMV+SRGVVRSRL
Sbjct: 1 MDAFRLAKEATLRALDTPVKKRGWTGSAAATKADDGTSGLPEAVHRGVRVVKVRAQRGQMVDSRGVVRSRL 71
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: A0A7S3XKZ4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKZ4_HETAK) HSP 1 Score: 114 bits (286), Expect = 1.790e-25 Identity = 62/169 (36.69%), Postives = 96/169 (56.80%), Query Frame = 1
Query: 76 RNPIIWASLFSRNLLPGVVNIHRSTHELLDRILEGQAAPDLDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSSGRPLIDGAVGDVAGVDGLERFERVLYHHATYLPLRLTQHLGGFTDLVALKINGLPYLNPWQLPGNGMDAFRRAKEATLRAL 582
R I+ N PG+ N+++++ ++ L + ++ LP +SAFD L+T+ F G A+AASM+VP +FKP + +G+P +DGA+ DVAG+ G+++ ERVLYHH T LP+ + + F + LKI GLP+L+P G + A AT AL
Sbjct: 87 REEILQLGTLMGNPWPGLFNVYKASQSVIRDFLPVHS---FEQCRLPAAISAFDIYNLRTQAFFSGDIVTAVAASMSVPFMFKPTFINGKPFLDGALFDVAGLAGVDKDERVLYHHCTALPVSCSG-IDAFRNSTTLKIEGLPFLDPATYSRRGAETIELAYVATKDAL 251
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: A0A813I6K8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I6K8_POLGL) HSP 1 Score: 100 bits (250), Expect = 1.840e-20 Identity = 58/154 (37.66%), Postives = 87/154 (56.49%), Query Frame = 1
Query: 124 GVVNIHRSTHELLDRILEGQAAPDLDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSS-GRPLIDGAVGDVAGVDGLERFERVLYHHATYLPLRLTQHLGGFTDLVALKINGLPYLNPWQLPGNGMDAFRRAKEATLRAL 582
G+ + L R+ + + L+ A+PV +S FD +T+V EG A A+ AS+AVP F PV+ GRPL+DG + D+ G++G+ ERVLYHHA+ +P T +G + + + L+I LP++NP+ L G A AK AT L
Sbjct: 124 GIFSTEHVQRCLQSRLEKYRLCQRLEDCAVPVAISTFDVFSRQTRVLREGSIAFAITASLAVPFFFAPVYFEVGRPLLDGGIRDLPGLEGVSFGERVLYHHASIVPSCFTA-IGRYPESITLRIPHLPFVNPFTL-GQAQPALTTAKLATQAGL 275
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: A0A7S3M828_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M828_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 4.600e-6 Identity = 46/176 (26.14%), Postives = 82/176 (46.59%), Query Frame = 1
Query: 154 ELLDRILEGQAAPD-LDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSSGRPLIDGAVGDVAGVD------GLERFERV----------------------LYHHATY----LPLRLTQHLGGFTDLVALKINGLPYLNPWQLPGNGMDAFRRAKEATLRAL 582
EL ++++E +++ P+ V+ +D R KT +EGK A A+ AS P +F+PV G P IDG V D G+ GL + + V ++ ++ LP +L H L+ + + +P ++P+ + G++A++ A+ ATL+AL
Sbjct: 132 ELFEQLIERNLPVQRIEECKYPLAVTTYDLMRFKTLHLTEGKLAQAMRASCTFPGMFQPVMIEGSPNIDGGVFDNVGLMALPHALGLHKSQSVNDCTECQESASDKTRMQLVVNIVFGRSSVASSVLPPQLKNH-----KLLTVVVENIPSVHPFSMDTMGVEAYKAARAATLKAL 302
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: N0B9T0_9HYPH (Patatin n=1 Tax=Hyphomicrobium denitrificans 1NES1 TaxID=670307 RepID=N0B9T0_9HYPH) HSP 1 Score: 58.2 bits (139), Expect = 8.530e-6 Identity = 47/146 (32.19%), Postives = 68/146 (46.58%), Query Frame = 1
Query: 85 IIWASLFSRNLLPGVVNIHRSTHE---LLDRILEGQAAPDLDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSSGRPLIDGAVGDVAGVDGLERFERVLYHHATYLPLRLTQHLGGFTDLVALKINGLPYLN 513
I A FSR L GVV + + +LD IL DL +P+ + A D + KVF+EG A+AASMA+P++F+PV GR LIDG + + PL +G +VA+ ++G+P N
Sbjct: 99 IATAQPFSR--LVGVVGRRNAILDPITVLDVILPKSVKSDLAACEIPIKIVASDFYYQEPKVFTEGPLRTAVAASMALPVIFQPVMDGGRALIDGGLTN---------------------PLPFDLVMGEADIVVAIDVSGVPVPN 221
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: UPI001D0AB3CC (patatin-like phospholipase family protein n=1 Tax=Mesorhizobium sp. PAMC28654 TaxID=2880934 RepID=UPI001D0AB3CC) HSP 1 Score: 57.4 bits (137), Expect = 1.200e-5 Identity = 45/112 (40.18%), Postives = 60/112 (53.57%), Query Frame = 1
Query: 52 ETMERAEARN---PIIWASLFS----RNLLPGVVNIHRSTHELLDRILEGQAAPDLDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSSGRPLIDGAV 366
ET+ R RN P+ W SL R+ L G I L++R L + +L+ + +P+ V A D + V SEG AADA+AAS A+P+ F PV GR LIDGAV
Sbjct: 66 ETLWRGITRNDVFPVSWLSLLGFARRRDFLSGSHGIRN----LVERHLPYR---NLEDAPIPIHVIATDLLSGEAVVLSEGNAADAIAASSAIPVAFAPVRIGGRFLIDGAV 170
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: A0A120CWG0_HYPSL (Serine protease n=2 Tax=Hyphomicrobium sulfonivorans TaxID=121290 RepID=A0A120CWG0_HYPSL) HSP 1 Score: 57.4 bits (137), Expect = 1.430e-5 Identity = 44/125 (35.20%), Postives = 59/125 (47.20%), Query Frame = 1
Query: 145 STHELLDRILEGQAAPDLDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSSGRPLIDGAVGDVAGVDGLERFERVLYHHATYLPLRLTQHLGGFTDL-VALKINGLPYLNP 516
S +LLD IL Q A D D P+ + A D + VFS G A+AASMA+P++F+PV GR LIDG + LP L + G DL VA+ ++G P +P
Sbjct: 117 SPEKLLDTILPPQFARDFDHLTTPLKIVASDFYAQEAVVFSSGPLRRAVAASMALPIIFQPVEVEGRVLIDGGL-------------------VNPLPFDL---IAGDADLTVAVDVSGAPTRSP 219
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: A0A6I0EC98_HYPSQ (Patatin-like phospholipase family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EC98_HYPSQ) HSP 1 Score: 56.2 bits (134), Expect = 3.550e-5 Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 1
Query: 154 ELLDRILEGQAAPDLDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSSGRPLIDGAV 366
+LLD IL + A D D A P+ V A D ++ VF+ G A+AASMA+P++F+PV GR LIDG +
Sbjct: 120 KLLDIILPARIARDFDHLATPLKVVASDFYAQESVVFASGPLRPAIAASMALPVIFQPVVIEGRVLIDGGL 190
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Match: UPI0003796C1D (patatin-like phospholipase family protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI0003796C1D) HSP 1 Score: 55.8 bits (133), Expect = 4.900e-5 Identity = 38/131 (29.01%), Postives = 60/131 (45.80%), Query Frame = 1
Query: 157 LLDRILEGQAAPDLDKSALPVLVSAFDTTRLKTKVFSEGKAADALAASMAVPLLFKPVWSSGRPLIDGAVGDVAGVDGLERFERVLYHHATYLPLRLTQHLGGFTDLVALKINGLPYLNPWQLPGNGMDAF 549
LLD + D+ A+P+ + A D L+ VFS G A+AASMA+P++F+PV SGR +DG + + PL G +VA+ ++G P +P +L ++A
Sbjct: 125 LLDLVFPEGVPRSFDELAIPLHIVASDFYALEPAVFSSGPLRPAVAASMALPVIFEPVLMSGRSYVDGGLTN---------------------PLPFDLMAGQVDVVVAIDVSGSPVPSPSRLRPTAIEAL 234 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7009.18058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7009.18058.1 >prot_Ecto-sp13_S_contig7009.18058.1 ID=prot_Ecto-sp13_S_contig7009.18058.1|Name=mRNA_Ecto-sp13_S_contig7009.18058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=237bp MDTDKLRETMERAEARNPIIWASLFSRNLLPGVVNIHRSTHELLDRILEGback to top mRNA from alignment at Ecto-sp13_S_contig7009:2442..6431- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7009.18058.1 ID=mRNA_Ecto-sp13_S_contig7009.18058.1|Name=mRNA_Ecto-sp13_S_contig7009.18058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3990bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7009:2442..6431- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7009:2442..6431- >mRNA_Ecto-sp13_S_contig7009.18058.1 ID=mRNA_Ecto-sp13_S_contig7009.18058.1|Name=mRNA_Ecto-sp13_S_contig7009.18058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=711bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7009:2442..6431- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |