mRNA_Ecto-sp13_S_contig69875.18003.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69875.18003.1
Unique NamemRNA_Ecto-sp13_S_contig69875.18003.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig69875.18003.1 vs. uniprot
Match: D7FIW4_ECTSI (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIW4_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 4.120e-34
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 1
Query:    7 AGRVNGNLNLSRSIGDLKYKANKELPPADQMITAEPDLKSVEVTDEDRFMILACDGVWDCMTSQE 201
            AGRVNGNLNLSRSIGDLKYKANK LPPADQMITAEPDLKSVEVTDEDRFMILACDGVWDCMTSQE
Sbjct:  571 AGRVNGNLNLSRSIGDLKYKANKGLPPADQMITAEPDLKSVEVTDEDRFMILACDGVWDCMTSQE 635          
BLAST of mRNA_Ecto-sp13_S_contig69875.18003.1 vs. uniprot
Match: A0A7S3XT22_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT22_HETAK)

HSP 1 Score: 103 bits (257), Expect = 4.610e-26
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    7 AGRVNGNLNLSRSIGDLKYKANKELPPADQMITAEPDLKSVEVTDEDRFMILACDGVWDCMTSQE 201
            AGRVNGNLNLSRS+GDLKYK NK LPP DQMITAEPD+   E+  +D F+I+ CDG+WDC T+QE
Sbjct:   94 AGRVNGNLNLSRSLGDLKYKQNKALPPRDQMITAEPDVTCTELQPDDEFIIIGCDGIWDCKTNQE 158          
BLAST of mRNA_Ecto-sp13_S_contig69875.18003.1 vs. uniprot
Match: A0A7R9UDU4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDU4_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.520e-25
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 1
Query:    4 QAGRVNGNLNLSRSIGDLKYKANKELPPADQMITAEPDLKSVEVTDEDRFMILACDGVWDCMTSQE 201
            + GRVNGNLNLSRSIGDLKYK NK +PPA+Q+ITAEPD+  VE++ +D F +LACDGVWDCM++Q+
Sbjct:  317 RVGRVNGNLNLSRSIGDLKYKQNKSIPPAEQIITAEPDVSVVEISPDDEFFVLACDGVWDCMSNQQ 382          
BLAST of mRNA_Ecto-sp13_S_contig69875.18003.1 vs. uniprot
Match: A0A7S2XW64_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW64_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.530e-25
Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    7 AGRVNGNLNLSRSIGDLKYKANKELPPADQMITAEPDLKSVEVTDEDRFMILACDGVWDCMTSQE 201
            AGRVNGNLNLSRS+GDLKYK N ++   DQMITAEPD+   ++ DED F+I+ACDGVWDCMT+QE
Sbjct:   75 AGRVNGNLNLSRSVGDLKYKQNTQVARKDQMITAEPDVTITDLKDEDEFVIIACDGVWDCMTNQE 139          
BLAST of mRNA_Ecto-sp13_S_contig69875.18003.1 vs. uniprot
Match: A0A1D6P7P8_MAIZE (Protein-serine/threonine phosphatase n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6P7P8_MAIZE)

HSP 1 Score: 97.1 bits (240), Expect = 3.200e-24
Identity = 41/65 (63.08%), Postives = 55/65 (84.62%), Query Frame = 1
Query:   10 GRVNGNLNLSRSIGDLKYKANKELPPADQMITAEPDLKSVEVTDEDRFMILACDGVWDCMTSQEV 204
            G VNGNLNLSR+IGD+K+K NK LPP  Q++TA PD+  VE+ D+D F++LACDG+WDCM+SQ++
Sbjct:   37 GHVNGNLNLSRAIGDMKFKQNKFLPPDKQILTANPDINIVELCDDDEFIVLACDGIWDCMSSQQL 101          
BLAST of mRNA_Ecto-sp13_S_contig69875.18003.1 vs. uniprot
Match: A0A7S0BUX4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BUX4_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.560e-24
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    4 QAGRVNGNLNLSRSIGDLKYKANKELPPADQMITAEPDLKSVEVTDEDRFMILACDGVWDCMTSQE 201
            Q GRVNGNLNLSRSIGDLKYK  K LPP+ QMITAEPD+  V++   D F IL CDG+WDC+++++
Sbjct:   13 QFGRVNGNLNLSRSIGDLKYKQTKSLPPSAQMITAEPDILQVKLNPGDEFFILGCDGIWDCLSNEQ 78          
BLAST of mRNA_Ecto-sp13_S_contig69875.18003.1 vs. uniprot
Match: A0A1D6P7P9_MAIZE (Protein-serine/threonine phosphatase n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6P7P9_MAIZE)

HSP 1 Score: 97.1 bits (240), Expect = 4.630e-24
Identity = 41/65 (63.08%), Postives = 55/65 (84.62%), Query Frame = 1
Query:   10 GRVNGNLNLSRSIGDLKYKANKELPPADQMITAEPDLKSVEVTDEDRFMILACDGVWDCMTSQEV 204
            G VNGNLNLSR+IGD+K+K NK LPP  Q++TA PD+  VE+ D+D F++LACDG+WDCM+SQ++
Sbjct:   41 GHVNGNLNLSRAIGDMKFKQNKFLPPDKQILTANPDINIVELCDDDEFIVLACDGIWDCMSSQQL 105          
BLAST of mRNA_Ecto-sp13_S_contig69875.18003.1 vs. uniprot
Match: A0A1D6MDW3_MAIZE (Protein-serine/threonine phosphatase n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6MDW3_MAIZE)

HSP 1 Score: 95.5 bits (236), Expect = 4.970e-24
Identity = 41/65 (63.08%), Postives = 54/65 (83.08%), Query Frame = 1
Query:   10 GRVNGNLNLSRSIGDLKYKANKELPPADQMITAEPDLKSVEVTDEDRFMILACDGVWDCMTSQEV 204
            G VNGNLNLSR+IGD+K+K NK LPP  Q++TA PD+  VE+ D D F++LACDG+WDCM+SQ++
Sbjct:    2 GHVNGNLNLSRAIGDMKFKQNKFLPPDKQILTANPDINIVELCDVDEFIVLACDGIWDCMSSQQL 66          
BLAST of mRNA_Ecto-sp13_S_contig69875.18003.1 vs. uniprot
Match: A0A7S1UEX6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEX6_9STRA)

HSP 1 Score: 102 bits (253), Expect = 5.680e-24
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    4 QAGRVNGNLNLSRSIGDLKYKANKELPPADQMITAEPDLKSVEVTDEDRFMILACDGVWDCMTSQE 201
            + GRVNGNLNLSRSIGDLKYK N   PP  Q+ITAEPD+  +E+ D+D F +LACDGVWDCMT+Q+
Sbjct:  320 RVGRVNGNLNLSRSIGDLKYKQNTSKPPEGQIITAEPDVSVIELVDDDEFFVLACDGVWDCMTNQQ 385          
BLAST of mRNA_Ecto-sp13_S_contig69875.18003.1 vs. uniprot
Match: A0A2R5G4L7_9STRA (Protein phosphatase, putative n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G4L7_9STRA)

HSP 1 Score: 102 bits (253), Expect = 5.770e-24
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1
Query:    4 QAGRVNGNLNLSRSIGDLKYKANKELPPADQMITAEPDLKSVEVTDEDRFMILACDGVWDCMTSQ 198
            +AGRVNGNLNLSRSIGDLKYK N++L PADQ+ITAEPD++  E+TDED F  +ACDGV+D MT+Q
Sbjct:  285 EAGRVNGNLNLSRSIGDLKYKVNEDLDPADQIITAEPDVRVFELTDEDEFFFIACDGVYDVMTNQ 349          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69875.18003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIW4_ECTSI4.120e-3498.46PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S3XT22_HETAK4.610e-2670.77Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9UDU4_9STRA1.520e-2569.70Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2XW64_9STRA1.530e-2570.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1D6P7P8_MAIZE3.200e-2463.08Protein-serine/threonine phosphatase n=2 Tax=Zea m... [more]
A0A7S0BUX4_9STRA3.560e-2465.15Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1D6P7P9_MAIZE4.630e-2463.08Protein-serine/threonine phosphatase n=2 Tax=Zea m... [more]
A0A1D6MDW3_MAIZE4.970e-2463.08Protein-serine/threonine phosphatase n=1 Tax=Zea m... [more]
A0A7S1UEX6_9STRA5.680e-2468.18Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2R5G4L7_9STRA5.770e-2472.31Protein phosphatase, putative n=1 Tax=Hondaea ferm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69875contigEcto-sp13_S_contig69875:20..223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score133.3
Seed ortholog evalue4.4e-29
Seed eggNOG ortholog2880.D7FIW4
Model size204
KEGG koko:K01090,ko:K04457,ko:K14803,ko:K17499,ko:K17505
KEGG Pathwayko04010,map04010
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0016020
Exons1
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
Cds size204
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463957.9635732-CDS-Ecto-sp13_S_contig69875:19..2231681463957.9635732-CDS-Ecto-sp13_S_contig69875:19..223Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69875 20..223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69875.18003.1prot_Ecto-sp13_S_contig69875.18003.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69875 20..223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69875.18003.1

>prot_Ecto-sp13_S_contig69875.18003.1 ID=prot_Ecto-sp13_S_contig69875.18003.1|Name=mRNA_Ecto-sp13_S_contig69875.18003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
LQAGRVNGNLNLSRSIGDLKYKANKELPPADQMITAEPDLKSVEVTDEDR
FMILACDGVWDCMTSQEV
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mRNA from alignment at Ecto-sp13_S_contig69875:20..223-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69875.18003.1 ID=mRNA_Ecto-sp13_S_contig69875.18003.1|Name=mRNA_Ecto-sp13_S_contig69875.18003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69875:20..223- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCAGGCAGGACGTGTGAACGGCAACCTAAACCTGTCGAGGTCTATCGG TGACCTCAAGTATAAGGCCAACAAGGAACTACCCCCGGCGGACCAGATGA TCACGGCAGAACCGGACCTCAAGTCGGTGGAGGTTACCGATGAGGACCGG TTCATGATTCTTGCATGCGACGGAGTCTGGGACTGCATGACGAGTCAGGA GGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69875:20..223-

>mRNA_Ecto-sp13_S_contig69875.18003.1 ID=mRNA_Ecto-sp13_S_contig69875.18003.1|Name=mRNA_Ecto-sp13_S_contig69875.18003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69875:20..223- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCAGGCAGGACGTGTGAACGGCAACCTAAACCTGTCGAGGTCTATCGG
TGACCTCAAGTATAAGGCCAACAAGGAACTACCCCCGGCGGACCAGATGA
TCACGGCAGAACCGGACCTCAAGTCGGTGGAGGTTACCGATGAGGACCGG
TTCATGATTCTTGCATGCGACGGAGTCTGGGACTGCATGACGAGTCAGGA
GGTA
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