mRNA_Ecto-sp13_S_contig10151.180.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10151.180.1 vs. uniprot
Match: A0A6H5K5R8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R8_9PHAE) HSP 1 Score: 358 bits (919), Expect = 3.800e-122 Identity = 190/285 (66.67%), Postives = 201/285 (70.53%), Query Frame = 1 Query: 1 MFSTTPYVIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAVACMGLTIRAGMFFGTDPAHYSSDMRECFYWDDIILAGAVLLFGAAPMSCLAIRISRVNDAFKIREELCCVFIGCSCCVAVLWVIQVLVELEIWPNTSAFHVVVEVQALLVGMNSGISGLLLPM----------------------------------------------------------------------------IARNPEDEQFNCFLHILNHYLLPTSPDEINVSSAMHKRIAPFRTR 627
MF+TTPYVIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAV C+GLTIRAG+FFGTDPAHYSSDMRECFYWDDI+L GAVLLFG APMSCLAIRISRV+DAFK+REELC VFIGCSCCVAVLWVIQVLVELE+ +TSA HVVVEVQALL+GMN G+SGLLLPM IARNPEDEQFNCFLHILNHYLLPTSPDEIN+SSAMHKRIAPFRTR
Sbjct: 1 MFATTPYVIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAVGCIGLTIRAGIFFGTDPAHYSSDMRECFYWDDIMLMGAVLLFGGAPMSCLAIRISRVHDAFKLREELCFVFIGCSCCVAVLWVIQVLVELELLSDTSALHVVVEVQALLIGMNIGLSGLLLPMVRAHRGGVKAWFRATVVPVDETVAVSALDVDGVVGLASSGGEMAEQFGKFCRENLCMESWDFLVDVVRYERMAPSPIARNPEDEQFNCFLHILNHYLLPTSPDEINISSAMHKRIAPFRTR 285
BLAST of mRNA_Ecto-sp13_S_contig10151.180.1 vs. uniprot
Match: D8LQY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY9_ECTSI) HSP 1 Score: 296 bits (758), Expect = 8.540e-100 Identity = 147/202 (72.77%), Postives = 171/202 (84.65%), Query Frame = 1 Query: 22 VIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAVACMGLTIRAGMFFGTDPAHYSSDMRECFYWDDIILAGAVLLFGAAPMSCLAIRISRVNDAFKIREELCCVFIGCSCCVAVLWVIQVLVELEIWPNTSAFHVVVEVQALLVGMNSGISGLLLPMIARNPEDEQFNCFLHILNHYLLPTSPDEINVSSAMHKRIAPFRTR 627
+IRA+RLV+AYNRKYRLKYA+FVKR ALGFWAV +GLT+RAG+FFGTDPAHYSSDMRECFYWDDI + G L+FG AP+S L IRISRVNDAF++REELC +GCS +LWVIQVLVELE+WP+T A HVVVEV LL+GMN+G GLLLPM++ +PE EQFN FL+ILN YLLPTSPDEIN+SSAM K +A FRTR
Sbjct: 1 MIRAIRLVIAYNRKYRLKYAKFVKRKRALGFWAVISIGLTVRAGLFFGTDPAHYSSDMRECFYWDDIFVVGIGLIFGGAPVSLLVIRISRVNDAFQLREELCRTIMGCSGIAVILWVIQVLVELEVWPDTPALHVVVEVLILLLGMNAGYWGLLLPMMS-SPE-EQFNSFLYILNQYLLPTSPDEINISSAMSKHMATFRTR 200
BLAST of mRNA_Ecto-sp13_S_contig10151.180.1 vs. uniprot
Match: A0A6H5KE83_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE83_9PHAE) HSP 1 Score: 266 bits (679), Expect = 6.880e-84 Identity = 178/443 (40.18%), Postives = 191/443 (43.12%), Query Frame = 1 Query: 1 MFSTTPYVIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAVACMGLTIRAGMFFGTDPAHYS------------------------------------------------------------------------------------------------------------------------------SDMRECFYWDDIILAGAVLLFGAAPMSCLAIRISRVNDAFKIREELCCVFIGCSCCVAVLWVIQVLVELEIWPNTSAFHVVVEVQALLVGMNSGISGLLLPMIA------------------------------------------------------------------------------------------------------------RNPEDEQFNCFLHILNHYLLPTSPDEINVSSAMHKRIAPFRTR 627
MF+TTPYVIRAVRLVVAYNRK RLKYARFVKRN+ALGF AVAC+GLTIRAG+FFGTDPAHYS SDMRECFYWDDIIL G ++L PMSCLAIRISRVNDAFKIREELC VFIGCSCC AVLWVIQVLVEL++ +TSA HVVV+VQALL+GMN GISGLLLPM+ NPEDEQ CFLHILNHYLLPTSPDEIN+SSAMHKRIAPFRTR
Sbjct: 1 MFATTPYVIRAVRLVVAYNRKCRLKYARFVKRNHALGFGAVACIGLTIRAGIFFGTDPAHYSRGQPNTQLEACQSGPLLQRRTRLQNTCRRRSHASIGVSDMRECFYWDVIILVGAILLLRGPPMSCLAIRISRAAGEGWQPLLLPPREKEKTKRRTRSNNCKPSCWRCTFPLISFISRLNCSYSLLCSDMRECFYWDDIILVGVMILSSGPPMSCLAIRISRVNDAFKIREELCFVFIGCSCCAAVLWVIQVLVELDLLSDTSALHVVVQVQALLIGMNIGISGLLLPMVRTHRGGVKAWFRATVVPVDETVAVSALDVDGVVGLASSVGEMAEQFGKFCRENLCMESWDLLVDVVRYERMVPSPSNIFCRVGFDTRWSCLWNFSHPNGLTWFVRFADRENPEDEQLKCFLHILNHYLLPTSPDEINISSAMHKRIAPFRTR 443
BLAST of mRNA_Ecto-sp13_S_contig10151.180.1 vs. uniprot
Match: D8LQX1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX1_ECTSI) HSP 1 Score: 123 bits (308), Expect = 6.710e-31 Identity = 85/205 (41.46%), Postives = 109/205 (53.17%), Query Frame = 1 Query: 16 PYVIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAVACMGLTIRAGMFFGTDPAHYSSDMRECFYWDDIILAGAVLLFGAAPMSCLAIRISRVNDAFKIREELCCVFIGCSCCVAVLWVIQVLVEL-EIWPNTSAFHVVVEVQALLVGMNSGISGLLLPMIARNPEDEQFNCFLHILNHYLLPTSPDEINVSSAMHKRIAPFRTR 627
PY IRAVRLV+AYNRKYRLKYA+FVKR +A G + + LTIRAG+FFG DPAHYSS +L + V + F ++ C VL + EL + + ++ +E LV + + ++A +PEDEQFN FL ILN YLLPTSPDEIN+SS+M RI F TR
Sbjct: 2 PYFIRAVRLVIAYNRKYRLKYAKFVKRKHATGVLVLTFIVLTIRAGLFFGDDPAHYSS-----------LLLPMARAHRGGVQEWFRATVVPVEEVFTVQASDEC---------GVLRLASGGGELAQQFGKFCQENLCMESWDFLVDVVR-YERIAPSLVANDPEDEQFNSFLFILNQYLLPTSPDEINISSSMSTRILAFGTR 185
BLAST of mRNA_Ecto-sp13_S_contig10151.180.1 vs. uniprot
Match: D8LQW8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW8_ECTSI) HSP 1 Score: 69.7 bits (169), Expect = 3.750e-11 Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 1 Query: 490 MIARNPEDEQFNCFLHILNHYLLPTSPDEINVSSAMHKRIAPFRTR 627
+IA +PEDEQFN FL ILN YLLPTSPDEIN+SS+M RI F TR
Sbjct: 77 LIANDPEDEQFNSFLFILNQYLLPTSPDEINISSSMSTRILAFGTR 122
BLAST of mRNA_Ecto-sp13_S_contig10151.180.1 vs. uniprot
Match: A0A6H5L0L8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L8_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 1.890e-6 Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1 Query: 511 DEQFNCFLHILNHYLLPTSPDEINVSSAMHKRIAPFRTR 627
D+QF+ FL +LN YLLPTSPDE+N+SS M KR+A F+TR
Sbjct: 326 DDQFDEFLILLNQYLLPTSPDEVNISSKMSKRMASFKTR 364
BLAST of mRNA_Ecto-sp13_S_contig10151.180.1 vs. uniprot
Match: D7FYH4_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYH4_ECTSI) HSP 1 Score: 53.1 bits (126), Expect = 5.360e-6 Identity = 26/53 (49.06%), Postives = 32/53 (60.38%), Query Frame = 1 Query: 469 ISGLLLPMIARNPEDEQFNCFLHILNHYLLPTSPDEINVSSAMHKRIAPFRTR 627
+ L M+ DEQF F I + YLL TSPDE+N+SSA K +A FRTR
Sbjct: 38 VDATLYEMMDATDADEQFMTFTMISDRYLLATSPDEVNISSATSKHVAAFRTR 90 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10151.180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10151.180.1 >prot_Ecto-sp13_S_contig10151.180.1 ID=prot_Ecto-sp13_S_contig10151.180.1|Name=mRNA_Ecto-sp13_S_contig10151.180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=209bp MFSTTPYVIRAVRLVVAYNRKYRLKYARFVKRNYALGFWAVACMGLTIRAback to top mRNA from alignment at Ecto-sp13_S_contig10151:3148..5618- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10151.180.1 ID=mRNA_Ecto-sp13_S_contig10151.180.1|Name=mRNA_Ecto-sp13_S_contig10151.180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10151:3148..5618- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10151:3148..5618- >mRNA_Ecto-sp13_S_contig10151.180.1 ID=mRNA_Ecto-sp13_S_contig10151.180.1|Name=mRNA_Ecto-sp13_S_contig10151.180.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10151:3148..5618- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |