mRNA_Ecto-sp13_S_contig69858.18000.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig69858.18000.1
Unique NamemRNA_Ecto-sp13_S_contig69858.18000.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69858.18000.1 vs. uniprot
Match: A0A7S0RGS6_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RGS6_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 8.080e-11
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    4 GDVAGARALFSKGTRQSPKHCPTWQAWGMLEWELGQISRARKLFQEGVWENPKGPYVVRIL 186
            G    AR LF  G R  P H   WQAWG++E  LG + RAR+L+QEGVW +P+    V +L
Sbjct:  151 GSPDAARGLFEAGLRADPGHLHLWQAWGVMEASLGNLDRARQLYQEGVWADPRSRNTVWVL 211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69858.18000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S0RGS6_9CHLO8.080e-1147.54Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69858contigEcto-sp13_S_contig69858:34..692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size252
Hectar predicted targeting categoryother localisation
Exons2
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463957.6132002-CDS-Ecto-sp13_S_contig69858:33..1581681463957.6132002-CDS-Ecto-sp13_S_contig69858:33..158Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69858 34..158 +
1681463957.6251817-CDS-Ecto-sp13_S_contig69858:565..6921681463957.6251817-CDS-Ecto-sp13_S_contig69858:565..692Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig69858 566..692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69858.18000.1prot_Ecto-sp13_S_contig69858.18000.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig69858 34..692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig69858.18000.1

>prot_Ecto-sp13_S_contig69858.18000.1 ID=prot_Ecto-sp13_S_contig69858.18000.1|Name=mRNA_Ecto-sp13_S_contig69858.18000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MGDVAGARALFSKGTRQSPKHCPTWQAWGMLEWELGQISRARKLFQEGVW
ENPKGPYVVRILQAWGILEATQGNWDDARKYFG*
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mRNA from alignment at Ecto-sp13_S_contig69858:34..692+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig69858.18000.1 ID=mRNA_Ecto-sp13_S_contig69858.18000.1|Name=mRNA_Ecto-sp13_S_contig69858.18000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=659bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69858:34..692+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGACGTTGCGGGAGCGAGGGCTCTCTTCAGCAAAGGGACGAGGCA
GTCTCCGAAGCACTGTCCGACGTGGCAGGCGTGGGGTATGCTCGAGTGGG
AGCTTGGACAGATTTCTAGAGCCAGGTACAGTAAGTGGTATGTGCAGTGC
CCGTGTCTCGATCGAATTGTGGCTCCACTTTCTTGTCTCATGCTGTCGCG
TGCAGAATAGAAACGGCGAAGCCTCTCTTCGACCCCTTGACCCCTTCTAT
GCTGTGTCAATTGGAGAGGGGTTGTGGCGTATGAAGTGCTCTGGGTCGCT
GCTATCCTGGTTCAGTCTTGTTGTTGTTGCTCGGAAACGTTGCTCGGAAA
TCGTCTCCAAATATCGATGGCATCGTTGTCTGCAATTTTCTTGCTGTGGT
TGTCTTGACGACCAGCCGTTCTATCTTGTGATTACGTGAGGTTGTCTTCT
GTTCCATGGCAACGCATGTTTCTCCTCGCTATTTCTTTTTTTTTTCGAAA
GTCTGATGTATGTGTGTGCGTGTTTTCAACAGGAAACTGTTCCAGGAGGG
CGTGTGGGAAAACCCCAAGGGGCCCTACGTGGTTCGCATCTTGCAGGCTT
GGGGCATCCTTGAGGCCACGCAGGGGAACTGGGACGATGCTCGCAAATAT
TTCGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig69858:34..692+

>mRNA_Ecto-sp13_S_contig69858.18000.1 ID=mRNA_Ecto-sp13_S_contig69858.18000.1|Name=mRNA_Ecto-sp13_S_contig69858.18000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig69858:34..692+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGACGTTGCGGGAGCGAGGGCTCTCTTCAGCAAAGGGACGAGGCA
GTCTCCGAAGCACTGTCCGACGTGGCAGGCGTGGGGTATGCTCGAGTGGG
AGCTTGGACAGATTTCTAGAGCCAGGAAACTGTTCCAGGAGGGCGTGTGG
GAAAACCCCAAGGGGCCCTACGTGGTTCGCATCTTGCAGGCTTGGGGCAT
CCTTGAGGCCACGCAGGGGAACTGGGACGATGCTCGCAAATATTTCGGGT
GA
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