prot_Ecto-sp13_S_contig69858.18000.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig69858.18000.1
Unique Nameprot_Ecto-sp13_S_contig69858.18000.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length84
Homology
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BLAST of mRNA_Ecto-sp13_S_contig69858.18000.1 vs. uniprot
Match: A0A7S0RGS6_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RGS6_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 8.080e-11
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 0 
Query:    2 GDVAGARALFSKGTRQSPKHCPTWQAWGMLEWELGQISRARKLFQEGVWENPKGPYVVRIL 62
            G    AR LF  G R  P H   WQAWG++E  LG + RAR+L+QEGVW +P+    V +L
Sbjct:  151 GSPDAARGLFEAGLRADPGHLHLWQAWGVMEASLGNLDRARQLYQEGVWADPRSRNTVWVL 211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig69858.18000.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S0RGS6_9CHLO8.080e-1147.54Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..83
e-value: 6.1E-11
score: 44.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 2..80
NoneNo IPR availablePANTHERPTHR44917FAMILY NOT NAMEDcoord: 2..82
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..83
score: 11.214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig69858contigEcto-sp13_S_contig69858:34..692 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig69858.18000.1mRNA_Ecto-sp13_S_contig69858.18000.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig69858 34..692 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig69858.18000.1 ID=prot_Ecto-sp13_S_contig69858.18000.1|Name=mRNA_Ecto-sp13_S_contig69858.18000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MGDVAGARALFSKGTRQSPKHCPTWQAWGMLEWELGQISRARKLFQEGVW
ENPKGPYVVRILQAWGILEATQGNWDDARKYFG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom